Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 185 260.8 12342668 99.6% 12293297 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,279,670 Δ1 bp coding (91/1191 nt) bcr ← multidrug efflux pump Bcr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,279,6680G.100.0% 1306.0 / NA 248coding (93/1191 nt)bcrmultidrug efflux pump Bcr
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (112/136);  total (112/136)

Only 100 of 262 total aligned reads displayed.

AGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACG  >  NC_000913/2279568‑2279764
                                                                                                    |                                                                                                
aGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGcgcg                                                                                                  >  2:2960301/1‑101 (MQ=255)
aGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGcgcg                                                                                                  >  2:2960304/1‑101 (MQ=255)
   ttAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCggca                                                                                               <  1:2959608/101‑3 (MQ=255)
   ttAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCggca                                                                                               >  2:2960308/1‑99 (MQ=255)
    tAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCggcag                                                                                              >  1:2960310/1‑98 (MQ=255)
     aaCTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCggcaga                                                                                             >  2:2960312/1‑97 (MQ=255)
        tGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATAc                                                                                         >  2:2960317/1‑101 (MQ=255)
           cccAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACata                                                                                      <  1:2960047/101‑1 (MQ=255)
            ccAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACatat                                                                                     >  2:2960320/1‑101 (MQ=255)
            ccAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACatat                                                                                     <  1:2959756/101‑1 (MQ=255)
             cAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATc                                                                                    <  2:2960102/101‑1 (MQ=255)
                cGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAAt                                                                                 >  2:2960322/1‑101 (MQ=255)
                cGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAAt                                                                                 >  1:2960323/1‑101 (MQ=255)
                 gCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATc                                                                                <  1:2959888/101‑1 (MQ=255)
                 gCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATc                                                                                <  2:2960057/101‑1 (MQ=255)
                 gCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATc                                                                                <  2:2960038/101‑1 (MQ=255)
                  cAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCg                                                                               <  1:2959950/101‑1 (MQ=255)
                  cAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCg                                                                               >  1:2960327/1‑101 (MQ=255)
                   aaaGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGa                                                                              >  2:2960329/1‑101 (MQ=255)
                   aaaGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGa                                                                              <  1:2960055/101‑1 (MQ=255)
                    aaGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGAc                                                                             <  2:2960018/101‑1 (MQ=255)
                    aaGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGAc                                                                             <  2:2959932/101‑1 (MQ=255)
                     aGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACa                                                                            <  2:2960154/101‑1 (MQ=255)
                      gCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAg                                                                           <  1:2959982/101‑1 (MQ=255)
                       cccAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGc                                                                          >  1:2960331/1‑101 (MQ=255)
                       cccAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGc                                                                          <  2:2959851/101‑1 (MQ=255)
                         cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCgg                                                                        <  1:2959978/101‑1 (MQ=255)
                         cAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCgg                                                                        >  2:2960335/1‑101 (MQ=255)
                          aGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGc                                                                       <  2:2960064/101‑1 (MQ=255)
                          aGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGc                                                                       <  1:2959936/101‑1 (MQ=255)
                          aGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGc                                                                       <  1:2959957/101‑1 (MQ=255)
                           gAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCa                                                                      >  1:2960337/1‑101 (MQ=255)
                            aaTATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCAt                                                                     >  1:2960340/1‑101 (MQ=255)
                              tataAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCa                                                                   <  1:2959842/101‑1 (MQ=255)
                              tataAGCACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCggc                                                                                                >  2:2960343/1‑72 (MQ=255)
                               ataAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCaa                                                                  <  2:2960007/101‑1 (MQ=255)
                                 aaGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACa                                                                >  1:2960346/1‑101 (MQ=255)
                                  aGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACAt                                                               <  2:2959949/101‑1 (MQ=255)
                                   gTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATg                                                              <  1:2959917/101‑1 (MQ=255)
                                     aCTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGc                                                            >  1:2960349/1‑101 (MQ=255)
                                     aCTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGc                                                            <  1:2959995/101‑1 (MQ=255)
                                        gAGGTTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCaa                                                                  <  2:2959793/92‑1 (MQ=255)
                                        gAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCcag                                                         >  2:2960352/1‑101 (MQ=255)
                                        gAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCcag                                                         >  1:2960351/1‑101 (MQ=255)
                                        gAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCcag                                                         <  1:2959904/101‑1 (MQ=255)
                                            gTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAgg                                                     >  2:2960354/1‑101 (MQ=255)
                                               aTCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCa                                                  >  1:2960358/1‑101 (MQ=255)
                                                 cTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAg                                                >  1:2960363/1‑101 (MQ=255)
                                                 cTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAg                                                >  2:2960364/1‑101 (MQ=255)
                                                  tGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAgg                                               >  1:2960369/1‑101 (MQ=255)
                                                  tGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAgg                                               >  1:2960366/1‑101 (MQ=255)
                                                     gTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATa                                            <  2:2959913/101‑1 (MQ=255)
                                                      tACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaa                                           <  1:2960000/101‑1 (MQ=255)
                                                      tACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaa                                           <  1:2960226/101‑1 (MQ=255)
                                                       aCTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaa                                          >  2:2960374/1‑101 (MQ=255)
                                                        cTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCcag                                                         <  1:2960110/85‑1 (MQ=255)
                                                        cTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaaa                                         <  1:2960059/101‑1 (MQ=255)
                                                         tGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATaaaaa                                        >  1:2960375/1‑101 (MQ=255)
                                                          gCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCcagc                                                        >  2:2960379/1‑84 (MQ=255)
                                                          gCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAAc                                       >  1:2960378/1‑101 (MQ=255)
                                                           cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCcag                                                         <  2:2960030/82‑1 (MQ=255)
                                                           cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGc                                                    <  2:2959828/87‑1 (MQ=255)
                                                           cccGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACa                                      <  2:2960086/101‑1 (MQ=255)
                                                            ccgccgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACaa                                     >  2:2960382/1‑101 (MQ=255)
                                                             cgccgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAAt                                    >  1:2960386/1‑101 (MQ=255)
                                                              gccgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATa                                   >  2:2960387/1‑101 (MQ=255)
                                                              gccgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATa                                   <  2:2959961/101‑1 (MQ=255)
                                                              gccgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATa                                   <  2:2959873/101‑1 (MQ=255)
                                                                cgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGc                                 <  1:2960033/101‑1 (MQ=255)
                                                                cgGTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGc                                 >  2:2960390/1‑101 (MQ=255)
                                                                 ggTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCa                                <  1:2960073/101‑1 (MQ=255)
                                                                 ggTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCa                                <  2:2960002/101‑1 (MQ=255)
                                                                  gTACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCaa                               >  1:2960392/1‑101 (MQ=255)
                                                                   tACGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCaaa                              <  1:2960017/101‑1 (MQ=255)
                                                                     cGCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacg                            >  1:2960396/1‑101 (MQ=255)
                                                                      gCCAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacga                           <  1:2960138/101‑1 (MQ=255)
                                                                       ccAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacgac                          >  1:2960400/1‑101 (MQ=255)
                                                                        cAAACTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAacgacg                         >  1:2960402/1‑101 (MQ=255)
                                                                         aaaCTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAAcgacga                        >  1:2960405/1‑101 (MQ=255)
                                                                          aaCTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGaa                       <  1:2960101/101‑1 (MQ=255)
                                                                           aCTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAAt                      <  2:2959891/101‑1 (MQ=255)
                                                                           aCTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAAt                      >  2:2960406/1‑101 (MQ=255)
                                                                            cTGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATg                     <  1:2960159/101‑1 (MQ=255)
                                                                             tGCGCTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGc                    >  2:2960408/1‑101 (MQ=255)
                                                                              gcgcTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCt                   <  1:2960134/101‑1 (MQ=255)
                                                                               cgcTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTg                  <  2:2960113/101‑1 (MQ=255)
                                                                                 cTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTc                >  1:2960412/1‑101 (MQ=255)
                                                                                 cTGAAATTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTc                >  1:2960414/1‑101 (MQ=255)
                                                                                    aaaTTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCggg             <  2:2959968/101‑1 (MQ=255)
                                                                                      aTTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCg               >  1:2960418/1‑97 (MQ=255)
                                                                                      aTTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGggtg           <  1:2959831/101‑1 (MQ=255)
                                                                                      aTTACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGggtg           >  2:2960417/1‑101 (MQ=255)
                                                                                        tACCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGggtggt         <  2:2960046/101‑1 (MQ=255)
                                                                                         aCCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTc        >  1:2960421/1‑101 (MQ=255)
                                                                                         aCCGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTc        <  1:2960192/101‑1 (MQ=255)
                                                                                          ccGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTca       <  1:2960166/101‑1 (MQ=255)
                                                                                          ccGGTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTca       <  1:2960011/101‑1 (MQ=255)
                                                                                             gTAGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACaa    >  1:2960425/1‑101 (MQ=255)
                                                                                               aGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACg  <  2:2960213/101‑1 (MQ=255)
                                                                                               aGCGC‑GGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACg  <  2:2960174/101‑1 (MQ=255)
                                                                                                    |                                                                                                
AGATTAACTGCCCCAACGCAAAGCCCAGAATATAAGTACTGAGGGTCATCTGCGTACTGCCCGCCGGTACGCCAAACTGCGCTGAAATTACCGGTAGCGCGGGCAGATACATATCAATCGACAGCGGCATCAACATGGCCAGCAGGCCAAGGATAAAAACAATAGCAAACGACGAATGCTGTCGGGTGGTCACAACG  >  NC_000913/2279568‑2279764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A