Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F13 I1 R1	185	260.8	12342668	99.6%	12293297	98.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,388,781	A→G	E49E (GAA→GAG)	yfbO →	uncharacterized protein YfbO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,388,781	0	A	G	100.0%	1092.9 / NA	263	E49E (GAA→GAG)	yfbO	uncharacterized protein YfbO
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (136/127); total (136/127)

Only 100 of 268 total aligned reads displayed.

GTTAATAATCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAACAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCGATGACCCAG  >  NC_000913/2388683‑2388878

   aataatCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAAtc                                                                                              >  2:3096905/1‑101 (MQ=255)

     taatCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAAtctc                                                                                            <  2:3096573/101‑1 (MQ=255)

      aatCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTcc                                                                                           <  2:3096597/101‑1 (MQ=255)

      aatCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTcc                                                                                           >  2:3096909/1‑101 (MQ=255)

       atCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCg                                                                                          <  2:3096487/101‑1 (MQ=255)

        tCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGc                                                                                         <  1:3096580/101‑1 (MQ=255)

           tGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAg                                                                                      <  2:3096602/101‑1 (MQ=255)

            gATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGc                                                                                     <  1:3096637/101‑1 (MQ=255)

             aTACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGct                                                                                    >  2:3096916/1‑101 (MQ=255)

             aTACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGct                                                                                    <  2:3096660/101‑1 (MQ=255)

              tACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGcta                                                                                   >  1:3096918/1‑101 (MQ=255)

               aCTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGctat                                                                                  >  1:3096920/1‑101 (MQ=255)

                ctcctcGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGctatc                                                                                 >  2:3096921/1‑101 (MQ=255)

                  cctcGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGctatcta                                                                               <  2:3096747/101‑1 (MQ=255)

                   ctcGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGctatctat                                                                              >  2:3096926/1‑101 (MQ=255)

                      gTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCAc                                                                           >  2:3096929/1‑101 (MQ=255)

                         cATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCAt                                                                        >  2:3096932/1‑101 (MQ=255)

                          aTTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCAtt                                                                       >  2:3096934/1‑101 (MQ=255)

                           ttGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCAttt                                                                      >  1:3096935/1‑101 (MQ=255)

                           ttGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCAttt                                                                      <  2:3096445/101‑1 (MQ=255)

                             gTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTc                                                                    <  2:3096666/101‑1 (MQ=255)

                              ttATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCt                                                                   >  2:3096940/1‑101 (MQ=255)

                                aTCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGa                                                                 >  1:3096942/1‑101 (MQ=255)

                                aTCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGa                                                                 <  2:3096224/101‑1 (MQ=255)

                                  ctctTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGaaa                                                               >  2:3096945/1‑101 (MQ=255)

                                   tctTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGaaaa                                                              <  2:3096548/101‑1 (MQ=255)

                                   tctTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGaaaa                                                              <  2:3096413/101‑1 (MQ=255)

                                    ctTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAAt                                                             <  1:3096667/101‑1 (MQ=255)

                                    ctTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAAt                                                             >  2:3096947/1‑101 (MQ=255)

                                    ctTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAAt                                                             >  1:3096949/1‑101 (MQ=255)

                                      tGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATAc                                                           >  2:3096952/1‑101 (MQ=255)

                                       gAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACg                                                          <  2:3096715/101‑1 (MQ=255)

                                        aGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGt                                                         <  2:3096505/101‑1 (MQ=255)

                                        aGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGt                                                         >  2:3096955/1‑101 (MQ=255)

                                         ggATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTg                                                        <  1:3096534/101‑1 (MQ=255)

                                          gATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGa                                                       <  2:3096843/101‑1 (MQ=255)

                                          gATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGa                                                       >  1:3096960/1‑101 (MQ=255)

                                          gATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGa                                                       <  2:3096652/101‑1 (MQ=255)

                                          gATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGa                                                       >  2:3096958/1‑101 (MQ=255)

                                           aTTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAg                                                      >  2:3096963/1‑101 (MQ=255)

                                            tttttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAg                                                      <  2:3096584/100‑1 (MQ=255)

                                            tttttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGc                                                     <  1:3096570/101‑1 (MQ=255)

                                            tttttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGc                                                     <  1:3096551/101‑1 (MQ=255)

                                             ttttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCg                                                    >  2:3096967/1‑101 (MQ=255)

                                              tttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGt                                                   >  2:3096969/1‑101 (MQ=255)

                                              tttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGt                                                   <  1:3096450/101‑1 (MQ=255)

                                              tttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGt                                                   >  1:3096970/1‑101 (MQ=255)

                                               ttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTa                                                  >  2:3096974/1‑101 (MQ=255)

                                               ttttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTa                                                  <  1:3096500/101‑1 (MQ=255)

                                                tttATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTaa                                                 >  2:3096977/1‑101 (MQ=255)

                                                  tATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACa                                               >  2:3096980/1‑101 (MQ=255)

                                                   aTTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACaa                                              >  1:3096983/1‑101 (MQ=255)

                                                    ttGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAAt                                             >  2:3096985/1‑101 (MQ=255)

                                                     tGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATg                                            >  1:3096987/1‑101 (MQ=255)

                                                      gACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGt                                           >  2:3096993/1‑101 (MQ=255)

                                                      gACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGt                                           >  1:3096991/1‑101 (MQ=255)

                                                      gACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGt                                           <  2:3096679/101‑1 (MQ=255)

                                                       aCAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGtt                                          >  1:3096998/1‑101 (MQ=255)

                                                       aCAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGtt                                          >  1:3096995/1‑101 (MQ=255)

                                                        cAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTa                                         <  1:3096488/101‑1 (MQ=255)

                                                        cAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTa                                         <  2:3096684/101‑1 (MQ=255)

                                                        cAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTa                                         <  2:3096694/101‑1 (MQ=255)

                                                         aataatATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAg                                        <  2:3096633/101‑1 (MQ=255)

                                                         aataatATCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAg                                        >  1:3097001/1‑101 (MQ=255)

                                                           taataTCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTg                                      <  1:3096478/101‑1 (MQ=255)

                                                           taataTCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTg                                      >  2:3097004/1‑101 (MQ=255)

                                                            aataTCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGa                                     >  2:3097007/1‑101 (MQ=255)

                                                            aataTCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGa                                     <  1:3096615/101‑1 (MQ=255)

                                                             atatCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGAt                                    >  1:3097009/1‑101 (MQ=255)

                                                              tatCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATg                                   <  1:3096554/101‑1 (MQ=255)

                                                              tatCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATg                                   <  2:3096562/101‑1 (MQ=255)

                                                               atCCATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGt                                  <  1:3096793/101‑1 (MQ=255)

                                                                  cATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGtttt                               >  2:3097013/1‑101 (MQ=255)

                                                                  cATGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGtttt                               >  1:3097012/1‑101 (MQ=255)

                                                                   aTGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTg                              <  2:3096903/101‑1 (MQ=255)

                                                                   aTGGTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTg                              <  2:3096546/101‑1 (MQ=255)

                                                                     ggTTCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGt                            >  2:3097016/1‑101 (MQ=255)

                                                                        tCAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGa                         <  2:3096627/101‑1 (MQ=255)

                                                                         cAATATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGaa                        >  2:3097020/1‑101 (MQ=255)

                                                                          aaTATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGaaa                       <  1:3096677/101‑1 (MQ=255)

                                                                          aaTATGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGaaa                       <  2:3096587/101‑1 (MQ=255)

                                                                           atatGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAAt                      >  1:3097021/1‑101 (MQ=255)

                                                                              tGTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTAc                   <  1:3096648/101‑1 (MQ=255)

                                                                               gTTGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACg                  >  2:3097026/1‑101 (MQ=255)

                                                                                ttGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGa                 <  2:3096611/101‑1 (MQ=255)

                                                                                ttGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGa                 >  1:3097027/1‑101 (MQ=255)

                                                                                 tGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGAt                <  2:3096315/101‑1 (MQ=255)

                                                                                 tGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGAt                <  1:3096254/101‑1 (MQ=255)

                                                                                 tGCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGAt                <  2:3096620/101‑1 (MQ=255)

                                                                                  gCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATg               <  1:3096591/101‑1 (MQ=255)

                                                                                  gCAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATg               >  2:3097029/1‑101 (MQ=255)

                                                                                   cAATGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGt              <  1:3096908/101‑1 (MQ=255)

                                                                                    aaTGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGtt             >  2:3097032/1‑101 (MQ=255)

                                                                                     aTGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTc            <  1:3096708/101‑1 (MQ=255)

                                                                                     aTGTGATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTc            >  1:3097035/1‑101 (MQ=255)

                                                                                      tgtgATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCg           <  1:3096762/101‑1 (MQ=255)

                                                                                        tgATTCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCGAt         <  2:3096806/101‑1 (MQ=255)

                                                                                            tCCAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCGATGAcc     >  2:3097039/1‑101 (MQ=255)

                                                                                              cAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCGATGACCCa   <  1:3096607/101‑1 (MQ=255)

                                                                                              cAGAGCAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCGATGACCCa   >  1:3097041/1‑101 (MQ=255)

GTTAATAATCCTGATACTCCTCGTCCATTGTTATCTCTTGAGGATTTTTTTATTGACAATAATATCCATGGTTCAATATGTTGCAATGTGATTCCAGAACAATCTCCGCAAGCTATCTATCACCATTTTCTGAAAATACGTGAGCGTAACAATGTTAGTGATGTTTTGGTAGAAATTACGATGTTCGATGACCCAG  >  NC_000913/2388683‑2388878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A