Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F13 I1 R1 185 260.8 12342668 99.6% 12293297 98.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,665,067 T→C A226A (GCT→GCC)  yfhR → putative peptidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,665,0670TC100.0% 1027.2 / NA 250A226A (GCT→GCC) yfhRputative peptidase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (133/117);  total (133/117)

Only 100 of 250 total aligned reads displayed.

ATCCCCGGCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCTGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACATTGATG  >  NC_000913/2664969‑2665164
                                                                                                  |                                                                                                 
    ccGGCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCAc                                                                                             >  2:3447952/1‑101 (MQ=255)
    ccGGCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCAc                                                                                             >  1:3447951/1‑101 (MQ=255)
     cGGCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACg                                                                                            >  2:3447954/1‑101 (MQ=255)
      ggCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGt                                                                                           <  2:3447638/101‑1 (MQ=255)
       gCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGtt                                                                                          <  1:3447448/101‑1 (MQ=255)
       gCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGtt                                                                                          <  1:3447916/101‑1 (MQ=255)
        cAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACg                                                                                            >  1:3447958/1‑98 (MQ=255)
        cAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTa                                                                                         <  1:3447737/101‑1 (MQ=255)
         aGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTAt                                                                                        <  1:3447582/101‑1 (MQ=255)
         aGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTAt                                                                                        >  1:3447960/1‑101 (MQ=255)
             gCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCa                                                                                    <  1:3447554/101‑1 (MQ=255)
             gCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCa                                                                                    >  1:3447964/1‑101 (MQ=255)
              cTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCAt                                                                                   >  1:3447966/1‑101 (MQ=255)
              cTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCAt                                                                                   <  2:3447465/101‑1 (MQ=255)
               tacttactTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATg                                                                                  <  2:3447563/101‑1 (MQ=255)
               tacttactTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATg                                                                                  >  2:3447967/1‑101 (MQ=255)
                 cttacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgc                                                                                <  2:3447561/101‑1 (MQ=255)
                 cttacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgc                                                                                <  2:3447354/101‑1 (MQ=255)
                  ttacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgca                                                                               >  2:3447973/1‑101 (MQ=255)
                  ttacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgca                                                                               >  1:3447972/1‑101 (MQ=255)
                  ttacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgca                                                                               <  2:3447647/101‑1 (MQ=255)
                  ttacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgca                                                                               <  1:3447491/101‑1 (MQ=255)
                   tacttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgcag                                                                              >  2:3447977/1‑101 (MQ=255)
                     cttGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGgcagca                                                                            >  1:3447980/1‑101 (MQ=255)
                       tgatgaGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGcaca                                                                          <  2:3447701/101‑1 (MQ=255)
                         atgaGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGc                                                                        >  1:3447985/1‑101 (MQ=255)
                         atgaGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGc                                                                        <  1:3447238/101‑1 (MQ=255)
                          tgaGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCg                                                                       >  2:3447987/1‑101 (MQ=255)
                           gagaGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGa                                                                      >  1:3447989/1‑101 (MQ=255)
                             gagTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGaaa                                                                    <  2:3447627/101‑1 (MQ=255)
                                ttACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGt                                                                 >  1:3447993/1‑101 (MQ=255)
                                 tACAGCTGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGtt                                                                <  1:3447823/101‑1 (MQ=255)
                                 tACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGtt                                                                >  1:3447995/1‑101 (MQ=255)
                                  aCAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTg                                                               >  2:3447999/1‑101 (MQ=255)
                                  aCAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTg                                                               <  2:3447644/101‑1 (MQ=255)
                                   cAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGt                                                              <  1:3447713/101‑1 (MQ=255)
                                   cAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGt                                                              >  1:3448000/1‑101 (MQ=255)
                                    aGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGta                                                             >  1:3448002/1‑101 (MQ=255)
                                      cggcgAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGtata                                                           >  2:3448005/1‑101 (MQ=255)
                                      cggcgAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGtata                                                           <  1:3447682/101‑1 (MQ=255)
                                       ggcgAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAg                                                          >  1:3448007/1‑101 (MQ=255)
                                          gAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCt                                                       <  2:3447734/101‑1 (MQ=255)
                                          gAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCt                                                       <  2:3447605/101‑1 (MQ=255)
                                            aaaTTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTgg                                                     <  1:3447546/101‑1 (MQ=255)
                                            aaaTTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTgg                                                     <  1:3447747/101‑1 (MQ=255)
                                             aaTTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGc                                                    >  1:3448011/1‑101 (MQ=255)
                                               ttATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCaa                                                  <  2:3447613/101‑1 (MQ=255)
                                                tataTCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCaaa                                                 <  2:3447809/101‑1 (MQ=255)
                                                tataTCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCaaa                                                 >  2:3448013/1‑101 (MQ=255)
                                                  tatCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAag                                               >  1:3448015/1‑101 (MQ=255)
                                                   atCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAaga                                              >  1:3448018/1‑101 (MQ=255)
                                                   atCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAaga                                              >  2:3448019/1‑101 (MQ=255)
                                                    tCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAagag                                             <  1:3447530/101‑1 (MQ=255)
                                                      gCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGcc                                           >  1:3448023/1‑101 (MQ=255)
                                                      gCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGc                                            >  1:3448025/1‑100 (MQ=255)
                                                       ccAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCa                                          <  1:3447722/101‑1 (MQ=255)
                                                        cAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCaa                                         <  1:3447587/101‑1 (MQ=255)
                                                        cAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCaa                                         <  1:3447673/101‑1 (MQ=255)
                                                         aGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCaaa                                        >  2:3448029/1‑101 (MQ=255)
                                                         aGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCaaa                                        <  2:3447868/101‑1 (MQ=255)
                                                          gCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTgg                                                     <  2:3447521/87‑1 (MQ=255)
                                                           cGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAAc                                      <  1:3447718/101‑1 (MQ=255)
                                                            gTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACg                                     >  2:3448031/1‑101 (MQ=255)
                                                             tCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACgg                                    >  1:3448032/1‑101 (MQ=255)
                                                             tCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACgg                                    <  2:3447731/101‑1 (MQ=255)
                                                              cAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGt                                   <  1:3447775/101‑1 (MQ=255)
                                                               aGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGtt                                  >  1:3448035/1‑101 (MQ=255)
                                                               aGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGtt                                  <  1:3447654/101‑1 (MQ=255)
                                                                gCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGc                                                                        <  1:3447629/62‑1 (MQ=255)
                                                                gCCCGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTg                                 <  2:3447820/101‑1 (MQ=255)
                                                                 cccGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAaga                                              >  1:3448040/1‑87 (MQ=255)
                                                                 cccGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGa                                >  1:3448038/1‑101 (MQ=255)
                                                                  ccGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGAt                               <  1:3447669/101‑1 (MQ=255)
                                                                   cGATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATc                              >  2:3448044/1‑101 (MQ=255)
                                                                    gATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCAt                                                                                   >  2:3448048/1‑47 (MQ=255)
                                                                    gATCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATcc                             >  1:3448045/1‑101 (MQ=255)
                                                                     aTCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAg                                                                  >  1:3448049/1‑63 (MQ=255)
                                                                     aTCCCGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCt                            <  2:3447692/101‑1 (MQ=255)
                                                                        ccGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAAt                         >  2:3448054/1‑101 (MQ=255)
                                                                        ccGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAAt                         >  1:3448055/1‑101 (MQ=255)
                                                                        ccGCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAAt                         <  1:3447694/101‑1 (MQ=255)
                                                                          gCTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATcc                       >  2:3448057/1‑101 (MQ=255)
                                                                           cTTTTACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATccc                      <  1:3447751/101‑1 (MQ=255)
                                                                            ttttACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCg                     >  1:3448059/1‑101 (MQ=255)
                                                                              ttACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGa                   >  1:3448064/1‑101 (MQ=255)
                                                                               tACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGAt                  >  2:3448066/1‑101 (MQ=255)
                                                                               tACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGAt                  <  2:3447667/101‑1 (MQ=255)
                                                                               tACTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGAt                  <  1:3447619/101‑1 (MQ=255)
                                                                                 cTCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATgg                <  2:3447677/101‑1 (MQ=255)
                                                                                  tCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGc               <  2:3447769/101‑1 (MQ=255)
                                                                                  tCATTCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGc               >  1:3448068/1‑101 (MQ=255)
                                                                                      tCACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAac           >  2:3448070/1‑101 (MQ=255)
                                                                                       cACGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAaca          >  1:3448072/1‑101 (MQ=255)
                                                                                         cGGTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAAcaca        >  2:3448075/1‑101 (MQ=255)
                                                                                          ggTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACAt       >  2:3448077/1‑101 (MQ=255)
                                                                                           gTAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACAtt      <  2:3447947/101‑1 (MQ=255)
                                                                                            tAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACAtt      >  1:3448080/1‑100 (MQ=255)
                                                                                            tAAAGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACATTg     <  1:3447651/101‑1 (MQ=255)
                                                                                              aaGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACATTGAt   >  1:3448084/1‑101 (MQ=255)
                                                                                               aGCCGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACATTGATg  <  2:3447757/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
ATCCCCGGCAGTGGCTACTTACTTGATGAGAGTTACAGCGGCGAAAATTATATCGCCAGCGTCAGCCCGATCCCGCTTTTACTCATTCACGGTAAAGCTGATCACGTTATCCCATGGCAGCACAGCGAAAAGTTGTATAGCCTGGCAAAAGAGCCAAAACGGTTGATCCTAATCCCGGATGGCGAACACATTGATG  >  NC_000913/2664969‑2665164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A