Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F13 I1 R1	131	334.0	15923330	99.7%	15875560	98.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,987,611	T→C	S26P (TCA→CCA)	yqeH →	putative LuxR family transcriptional regulator YqeH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,987,611	0	T	C	100.0%	1741.2 / NA	426	S26P (TCA→CCA)	yqeH	putative LuxR family transcriptional regulator YqeH
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (215/211); total (215/211)

Only 100 of 426 total aligned reads displayed.

ATACGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAA  >  NC_000913/2987513‑2987708

ataCGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCa                                                                                                 <  1:5020077/101‑1 (MQ=255)

 taCGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCAc                                                                                                >  1:5020863/1‑101 (MQ=255)

  aCGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCAcc                                                                                               <  2:5019915/101‑1 (MQ=255)

   cGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACcg                                                                                              >  1:5020870/1‑101 (MQ=255)

   cGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACcg                                                                                              >  2:5020869/1‑101 (MQ=255)

    ggATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACcgc                                                                                             >  2:5020874/1‑101 (MQ=255)

    ggATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACcgc                                                                                             <  1:5020376/101‑1 (MQ=255)

       tAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGtt                                                                                          >  1:5020879/1‑101 (MQ=255)

        aGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGttt                                                                                         <  1:5020236/101‑1 (MQ=255)

           gAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCa                                                                                      <  1:5020005/101‑1 (MQ=255)

           gAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCa                                                                                      >  1:5020886/1‑101 (MQ=255)

           gAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCa                                                                                      >  2:5020885/1‑101 (MQ=255)

             ggTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGt                                                                                    <  2:5020162/101‑1 (MQ=255)

             ggTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGt                                                                                    <  2:5020285/101‑1 (MQ=255)

              gTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTa                                                                                   <  1:5019679/101‑1 (MQ=255)

              gTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTa                                                                                   <  2:5020453/101‑1 (MQ=255)

              gTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTa                                                                                   <  1:5020216/101‑1 (MQ=255)

                tCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTAtt                                                                                 <  2:5020073/101‑1 (MQ=255)

                tCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTAtt                                                                                 <  1:5020038/101‑1 (MQ=255)

                tCTAAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTAtt                                                                                 >  2:5020894/1‑101 (MQ=255)

                  ttAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTgc                                                                               >  2:5020899/1‑101 (MQ=255)

                  ttAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTgc                                                                               <  1:5020576/101‑1 (MQ=255)

                   tAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTgcg                                                                              >  1:5020903/1‑101 (MQ=255)

                   tAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTgcg                                                                              >  2:5020906/1‑101 (MQ=255)

                     aCATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCa                                                                            >  2:5020911/1‑101 (MQ=255)

                       aTGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTg                                                                                >  1:5020916/1‑95 (MQ=255)

                         ggggCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACt                                                                        <  2:5020662/101‑1 (MQ=255)

                          gggCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTc                                                                       >  1:5020921/1‑101 (MQ=255)

                            gCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCgt                                                                     >  2:5020924/1‑101 (MQ=255)

                             cTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCgtg                                                                    <  2:5019765/101‑1 (MQ=255)

                               ttGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGtt                                                                  <  1:5020333/101‑1 (MQ=255)

                               ttGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGtt                                                                  >  1:5020929/1‑101 (MQ=255)

                                tGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGttt                                                                 >  2:5020930/1‑101 (MQ=255)

                                 gTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGtttt                                                                <  1:5020364/101‑1 (MQ=255)

                                 gTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGtttt                                                                <  2:5019820/101‑1 (MQ=255)

                                 gTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGtttt                                                                <  2:5020555/101‑1 (MQ=255)

                                  tAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGttttt                                                               >  2:5020936/1‑101 (MQ=255)

                                       gTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtg                                                          >  2:5020942/1‑101 (MQ=255)

                                        ttATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgt                                                         <  1:5020160/101‑1 (MQ=255)

                                        ttATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgt                                                         >  1:5020944/1‑101 (MQ=255)

                                        ttATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgt                                                         >  1:5020949/1‑101 (MQ=255)

                                        ttATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgt                                                         <  2:5020117/101‑1 (MQ=255)

                                         tataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgtg                                                        <  1:5020140/101‑1 (MQ=255)

                                         tataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTAtgtg                                                        <  2:5020312/101‑1 (MQ=255)

                                          ataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTgg                                                       >  2:5020955/1‑101 (MQ=255)

                                           taAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGc                                                      <  1:5019890/101‑1 (MQ=255)

                                           taAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGc                                                      >  1:5020956/1‑101 (MQ=255)

                                             aaaGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGccc                                                    >  2:5020965/1‑101 (MQ=255)

                                             aaaGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGccc                                                    >  1:5020962/1‑101 (MQ=255)

                                               aGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCga                                                  >  2:5020973/1‑101 (MQ=255)

                                               aGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCga                                                  >  1:5020972/1‑101 (MQ=255)

                                                  cTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCgaaga                                               <  2:5020332/101‑1 (MQ=255)

                                                   ttACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCgaagaa                                              >  2:5020983/1‑101 (MQ=255)

                                                   ttACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCgaagaa                                              >  1:5020980/1‑101 (MQ=255)

                                                    tACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGaaa                                             >  1:5020985/1‑101 (MQ=255)

                                                     aCATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAg                                            <  2:5020481/101‑1 (MQ=255)

                                                      cATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGt                                           <  1:5020464/101‑1 (MQ=255)

                                                       aTGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGtt                                          <  1:5020247/101‑1 (MQ=255)

                                                       aTGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGtt                                          >  1:5020993/1‑101 (MQ=255)

                                                        tGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTc                                         >  2:5020996/1‑101 (MQ=255)

                                                          cAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCat                                       >  2:5021002/1‑101 (MQ=255)

                                                            aTAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCatat                                     >  1:5021004/1‑101 (MQ=255)

                                                            aTAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCatat                                     <  1:5020341/101‑1 (MQ=255)

                                                             tAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATAtt                                    <  2:5020271/101‑1 (MQ=255)

                                                              aGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATAttt                                   >  2:5021009/1‑101 (MQ=255)

                                                               gTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATAtttt                                  <  2:5020379/101‑1 (MQ=255)

                                                               gTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATAtttt                                  <  2:5020596/101‑1 (MQ=255)

                                                                ttGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTa                                 <  2:5020781/101‑1 (MQ=255)

                                                                ttGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTa                                 <  1:5019946/101‑1 (MQ=255)

                                                                ttGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTa                                 <  1:5020191/101‑1 (MQ=255)

                                                                 tGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTaa                                >  1:5021013/1‑101 (MQ=255)

                                                                 tGCTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTaa                                <  1:5020121/101‑1 (MQ=255)

                                                                   cTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATc                              <  2:5020254/101‑1 (MQ=255)

                                                                   cTCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATc                              >  2:5021015/1‑101 (MQ=255)

                                                                    tCAATGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCg                             >  1:5021020/1‑101 (MQ=255)

                                                                      aaTGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtg                           >  1:5021027/1‑101 (MQ=255)

                                                                       aTGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtgg                          >  2:5021028/1‑101 (MQ=255)

                                                                        tGCATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtggt                         <  1:5020278/101‑1 (MQ=255)

                                                                          cATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtggtgt                       <  1:5020426/101‑1 (MQ=255)

                                                                          cATTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtggtgt                       >  2:5021035/1‑101 (MQ=255)

                                                                           aTTGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtggtgtg                      >  1:5021037/1‑101 (MQ=255)

                                                                             tGCCAAATAATGCCAGAAGAGCCACCGCGTTTGCAg                                                                                     >  1:5021042/1‑36 (MQ=255)

                                                                                 aaaTAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGaa                <  1:5020290/101‑1 (MQ=255)

                                                                                 aaaTAATGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGaa                >  2:5021048/1‑101 (MQ=255)

                                                                                  aataatGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAg               <  1:5020198/101‑1 (MQ=255)

                                                                                   ataatGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAgg              <  1:5020678/101‑1 (MQ=255)

                                                                                   ataatGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAgg              <  2:5019997/101‑1 (MQ=255)

                                                                                    taatGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGt             >  2:5021052/1‑101 (MQ=255)

                                                                                     aatGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTa            <  1:5020768/101‑1 (MQ=255)

                                                                                      atGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTAt           <  1:5020403/101‑1 (MQ=255)

                                                                                      atGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTAt           <  2:5020427/101‑1 (MQ=255)

                                                                                      atGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTAt           <  2:5020350/101‑1 (MQ=255)

                                                                                      atGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTAt           >  1:5021055/1‑101 (MQ=255)

                                                                                       tGCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATc          >  2:5021060/1‑101 (MQ=255)

                                                                                        gCCAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCt         <  2:5020185/101‑1 (MQ=255)

                                                                                         ccAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCtt        <  2:5020300/101‑1 (MQ=255)

                                                                                         ccAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCtt        <  2:5020409/101‑1 (MQ=255)

                                                                                          cAGAAGAGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTa       >  2:5021065/1‑101 (MQ=255)

                                                                                           agaagaGCCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTaa      >  2:5021069/1‑101 (MQ=255)

                                                                                             aagaGCCACCGCGTTTGCAGTATTGCGCAAACTCgtg                                                                    <  1:5020493/37‑1 (MQ=255)

ATACGGATAGGGAGGTTCTTAACATGGGGCTTTGTAGTCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAA  >  NC_000913/2987513‑2987708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A