Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F13 I1 R1 106 290.2 13814944 99.7% 13773499 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,529,317 A→G V287A (GTG→GCG)  ligA ← DNA ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,529,3170AG100.0% 919.5 / NA 218V287A (GTG→GCG) ligADNA ligase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (101/117);  total (101/117)

Only 100 of 231 total aligned reads displayed.

GCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCACGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCGATC  >  NC_000913/2529219‑2529414
                                                                                                  |                                                                                                 
gCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACcgcg                                                                                                 >  2:3681160/1‑101 (MQ=255)
 cTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCgcgc                                                                                                >  1:3681161/1‑101 (MQ=255)
  tCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGcc                                                                                               >  1:3681164/1‑101 (MQ=255)
    cTGCGCCGGGAATTTGAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGt                                                                                             <  1:3680616/101‑1 (MQ=255)
    cTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGt                                                                                             >  1:3681167/1‑101 (MQ=255)
    cTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGt                                                                                             >  2:3681169/1‑101 (MQ=255)
     tGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTc                                                                                            <  1:3681025/101‑1 (MQ=255)
       cgcCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGa                                                                                          >  1:3681171/1‑101 (MQ=255)
       cgcCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGa                                                                                          >  2:3681172/1‑101 (MQ=255)
        gcCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGat                                                                                         <  1:3680875/101‑1 (MQ=255)
         ccGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGata                                                                                        >  1:3681175/1‑101 (MQ=255)
         ccGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGata                                                                                        <  2:3680966/101‑1 (MQ=255)
           gggAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATc                                                                                      >  2:3681177/1‑101 (MQ=255)
            ggAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCa                                                                                     <  1:3680728/101‑1 (MQ=255)
             gAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCaa                                                                                    >  1:3681179/1‑101 (MQ=255)
              aaTTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCaaa                                                                                   >  1:3681182/1‑101 (MQ=255)
                 ttAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGcc                                                                                >  1:3681185/1‑101 (MQ=255)
                 ttAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGcc                                                                                <  2:3680780/101‑1 (MQ=255)
                   aaaCGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCa                                                                              >  1:3681189/1‑101 (MQ=255)
                   aaaCGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCa                                                                              <  2:3680986/101‑1 (MQ=255)
                   aaaCGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCa                                                                              >  2:3681188/1‑101 (MQ=255)
                     aCGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGc                                                                            <  2:3680628/101‑1 (MQ=255)
                     aCGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGc                                                                            <  2:3680822/101‑1 (MQ=255)
                      cGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCg                                                                           <  1:3680812/101‑1 (MQ=255)
                      cGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCg                                                                           >  1:3681192/1‑101 (MQ=255)
                      cGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCg                                                                           <  1:3680713/101‑1 (MQ=255)
                       gCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGt                                                                          >  2:3681193/1‑101 (MQ=255)
                        cTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTc                                                                         >  1:3681196/1‑101 (MQ=255)
                          aCCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCgg                                                                       >  2:3681199/1‑101 (MQ=255)
                            cGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGc                                                                     <  2:3680720/101‑1 (MQ=255)
                            cGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGc                                                                     <  1:3680738/101‑1 (MQ=255)
                             gCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCCCCGCGCCGTCGATATCAAAGCCCAGCg                                                                           <  1:3680770/94‑1 (MQ=255)
                              cccAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCgg                                                                   <  1:3680797/101‑1 (MQ=255)
                              cccAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCgg                                                                   >  2:3681202/1‑101 (MQ=255)
                               ccAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGt                                                                  >  2:3681205/1‑101 (MQ=255)
                               ccAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGt                                                                  >  1:3681204/1‑101 (MQ=255)
                                 aGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGtct                                                                >  1:3681208/1‑101 (MQ=255)
                                  gcgcGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGtctt                                                               <  1:3680748/101‑1 (MQ=255)
                                    gcgGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGtcttct                                                             >  2:3681210/1‑101 (MQ=255)
                                       gggCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTcc                                                          <  1:3680925/101‑1 (MQ=255)
                                        ggCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCa                                                         <  2:3680895/101‑1 (MQ=255)
                                         gCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCAc                                                        <  2:3680673/101‑1 (MQ=255)
                                          cACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACt                                                       >  2:3681214/1‑101 (MQ=255)
                                             gcgcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtg                                                    >  1:3681216/1‑101 (MQ=255)
                                              cgcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtgt                                                   <  1:3680910/101‑1 (MQ=255)
                                              cgcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtgt                                                   <  1:3680826/101‑1 (MQ=255)
                                               gcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtgtg                                                  >  2:3681219/1‑101 (MQ=255)
                                               gcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtgtg                                                  <  1:3680870/101‑1 (MQ=255)
                                               gcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtgtg                                                  >  1:3681220/1‑101 (MQ=255)
                                               gcgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTtgtg                                                  <  2:3680863/101‑1 (MQ=255)
                                                cgACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGa                                                 <  2:3680710/101‑1 (MQ=255)
                                                 gACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGAt                                                <  1:3681060/101‑1 (MQ=255)
                                                 gACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGAt                                                >  1:3681223/1‑101 (MQ=255)
                                                  aCAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATa                                               >  2:3681224/1‑101 (MQ=255)
                                                    aaaGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGa                                             <  1:3680789/101‑1 (MQ=255)
                                                    aaaGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGa                                             <  2:3681067/101‑1 (MQ=255)
                                                     aaGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGaa                                            <  1:3680888/101‑1 (MQ=255)
                                                       gCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACg                                          <  2:3681015/101‑1 (MQ=255)
                                                        ccAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGc                                         <  2:3680773/101‑1 (MQ=255)
                                                         cAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGcc                                        <  1:3681084/101‑1 (MQ=255)
                                                         cAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGcc                                        <  2:3680759/101‑1 (MQ=255)
                                                          aaGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCa                                       <  2:3680951/101‑1 (MQ=255)
                                                           aGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAg                                      <  2:3680886/101‑1 (MQ=255)
                                                           aGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAg                                      >  2:3681227/1‑101 (MQ=255)
                                                            gctgctCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGc                                     <  2:3680796/101‑1 (MQ=255)
                                                             ctgctCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCATCa                                    >  1:3681229/1‑101 (MQ=255)
                                                              tgctCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCAc                                   <  2:3680867/101‑1 (MQ=255)
                                                              tgctCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCAc                                   <  1:3680891/101‑1 (MQ=255)
                                                               gctCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCAct                                  <  2:3680880/101‑1 (MQ=255)
                                                                ctCCTGCTGTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCActt                                 <  2:3680923/101‑1 (MQ=255)
                                                                   ctgctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGtc                                                                 >  2:3681235/1‑66 (MQ=255)
                                                                   ctgctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCActtctt                              >  2:3681233/1‑101 (MQ=255)
                                                                    tgctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACttcttc                             >  1:3681236/1‑101 (MQ=255)
                                                                    tgctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACttcttc                             <  1:3680680/101‑1 (MQ=255)
                                                                     gctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTcc                            >  2:3681239/1‑101 (MQ=255)
                                                                     gctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTcc                            <  2:3680972/101‑1 (MQ=255)
                                                                      ctgTGCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTccg                           <  2:3680843/101‑1 (MQ=255)
                                                                        gtgCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTccgcc                         >  1:3681241/1‑101 (MQ=255)
                                                                        gtgCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTccgcc                         <  2:3681080/101‑1 (MQ=255)
                                                                        gtgCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTccgcc                         <  2:3680902/101‑1 (MQ=255)
                                                                         tgCCAGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTccgccg                        <  2:3680957/101‑1 (MQ=255)
                                                                             aGTGAGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTc                    >  2:3681243/1‑101 (MQ=255)
                                                                                 aGTTGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACaa                >  1:3681246/1‑101 (MQ=255)
                                                                                   ttGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAg              >  1:3681249/1‑101 (MQ=255)
                                                                                    tGACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGc             >  2:3681250/1‑101 (MQ=255)
                                                                                     gACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCg            >  1:3681253/1‑101 (MQ=255)
                                                                                     gACCTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCg            >  2:3681254/1‑101 (MQ=255)
                                                                                       ccTTAATCGCCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGc                                     <  2:3680542/74‑1 (MQ=255)
                                                                                       ccTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGtt          <  1:3680520/101‑1 (MQ=255)
                                                                                        cTTAATCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTa         >  2:3681258/1‑101 (MQ=255)
                                                                                           aaTCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTAccc      <  1:3680816/101‑1 (MQ=255)
                                                                                           aaTCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTAccc      >  2:3681260/1‑101 (MQ=255)
                                                                                            aTCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCg     >  1:3681261/1‑101 (MQ=255)
                                                                                             tCACCGCGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCGa    >  2:3681263/1‑101 (MQ=255)
                                                                                              caccgcGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAg                                              <  1:3680839/58‑1 (MQ=255)
                                                                                              caccgcGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCAct                                  <  1:3681006/70‑1 (MQ=255)
                                                                                              caccgcGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACttcttc                             <  2:3681048/75‑1 (MQ=255)
                                                                                               accgcGCCGTCGATATCAAAGCCCAGTGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCGATc  <  1:3680862/101‑1 (MQ=255)
                                                                                               accgcGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCGATc  >  1:3681268/1‑101 (MQ=255)
                                                                                               accgcGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCGATc  <  1:3680928/101‑1 (MQ=255)
                                                                                                  |                                                                                                 
GCTCCTGCGCCGGGAATTTAAACGCTACCGCCCAGCGCGGGGCACGCGCGACAAAGCCAAGCTGCTCCTGCTGTGCCAGTGAGTTGACCTTAATCACCACGCCGTCGATATCAAAGCCCAGCGTCGGGCGGTCTTCTTCCACTTTGTGATAGAACGCCAGCACTTCTTCCGCCGATTCACAAAGCGTTACCCGATC  >  NC_000913/2529219‑2529414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A