Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F13 I1 R1 106 290.2 13814944 99.7% 13773499 98.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,765,794 (C)7→6 intergenic (‑18/‑124) yfjM ← / → rnlA CP4‑57 prophage; protein YfjM/CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,765,7880C.98.6% 1118.8 / 5.5 218intergenic (‑12/‑130)yfjM/rnlACP4‑57 prophage; protein YfjM/CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base C (0/3);  new base . (111/104);  total (111/107)
Fisher's exact test for biased strand distribution p-value = 1.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01

Only 100 of 245 total aligned reads displayed.

TTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAG  >  NC_000913/2765688‑2765884
                                                                                                    |                                                                                                
 tGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcc                                                                                                 >  1:4022491/1‑101 (MQ=255)
 tGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcc                                                                                                 >  2:4022490/1‑101 (MQ=255)
  gTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccc                                                                                                >  2:4022494/1‑101 (MQ=255)
  gTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccc                                                                                                <  2:4022147/101‑1 (MQ=255)
     tgctgGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGcccccc                                                                                             <  1:4022113/101‑1 (MQ=255)
      gctgGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccccg                                                                                            >  1:4022498/1‑100 (MQ=255)
       ctgGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccccgg                                                                                           >  1:4022501/1‑99 (MQ=255)
         ggCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGccccccggta                                                                                         <  1:4021822/101‑5 (MQ=255)
          gCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAg                                                                                       <  2:4021977/101‑1 (MQ=255)
            gAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGAc                                                                                     >  2:4022505/1‑101 (MQ=255)
            gAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGAc                                                                                     >  2:4022503/1‑101 (MQ=255)
              ataatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGa                                                                                   >  1:4022508/1‑101 (MQ=255)
              ataatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGa                                                                                   <  2:4022125/101‑1 (MQ=255)
               taatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGAt                                                                                  <  1:4022164/101‑1 (MQ=255)
               taatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGAt                                                                                  >  1:4022512/1‑101 (MQ=255)
               taatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGAt                                                                                  <  1:4021989/101‑1 (MQ=255)
                aatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc                                                                                 >  1:4022516/1‑101 (MQ=255)
                aatTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATc                                                                                 >  2:4022515/1‑101 (MQ=255)
                 atTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATcc                                                                                <  2:4022235/101‑1 (MQ=255)
                  ttACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCt                                                                               >  1:4022520/1‑101 (MQ=255)
                  ttACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCt                                                                               <  2:4022105/101‑1 (MQ=255)
                    aCTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGc                                                                             >  1:4022524/1‑101 (MQ=255)
                       aaGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCt                                                                          >  1:4022527/1‑101 (MQ=255)
                        aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCta                                                                         >  1:4022529/1‑101 (MQ=255)
                        aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCta                                                                         <  2:4022154/101‑1 (MQ=255)
                        aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCta                                                                         >  2:4022530/1‑101 (MQ=255)
                        aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCta                                                                         <  1:4022176/101‑1 (MQ=255)
                         gTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCtat                                                                        >  1:4022533/1‑101 (MQ=255)
                          tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCtata                                                                       <  1:4022331/101‑1 (MQ=255)
                          tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCtata                                                                       >  2:4022535/1‑101 (MQ=255)
                           aTCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAg                                                                      >  1:4022537/1‑101 (MQ=255)
                             cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGtt                                                                    >  2:4022541/1‑101 (MQ=255)
                             cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGtt                                                                    <  2:4022226/101‑1 (MQ=255)
                              gAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTg                                                                   >  1:4022542/1‑101 (MQ=255)
                              gAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTg                                                                   >  2:4022546/1‑101 (MQ=255)
                                gTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGccc                                                                           >  2:4022549/1‑91 (MQ=255)
                                 ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAg                                                                <  1:4022260/101‑1 (MQ=255)
                                  tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGtt                                                                    >  2:4022552/1‑96 (MQ=255)
                                  tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGt                                                               >  1:4022551/1‑101 (MQ=255)
                                   gctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTg                                                              <  1:4022050/101‑1 (MQ=255)
                                     tgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGcc                                                            >  2:4022555/1‑101 (MQ=255)
                                      gctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTgg                                                                  >  1:4022558/1‑94 (MQ=255)
                                        ttGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGccccc                                                         >  2:4022561/1‑101 (MQ=255)
                                          ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGa                                                                 >  2:4022565/1‑91 (MQ=255)
                                          ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGTGTGCCCCCTa                                                       >  1:4022564/1‑101 (MQ=255)
                                           gTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTAt                                                      <  2:4022257/101‑1 (MQ=255)
                                            tGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTAtt                                                     >  2:4022567/1‑101 (MQ=255)
                                             gagaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTc                                                    <  2:4022300/101‑1 (MQ=255)
                                              agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCa                                                   <  2:4022274/101‑1 (MQ=255)
                                              agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCa                                                   <  2:4022213/101‑1 (MQ=255)
                                              agaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCa                                                   <  2:4022134/101‑1 (MQ=255)
                                                aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGc                                                             >  1:4022572/1‑89 (MQ=255)
                                                aTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAgg                                                 >  2:4022570/1‑101 (MQ=255)
                                                   aGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCt                                                                               <  2:4022181/68‑1 (MQ=255)
                                                     gAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCt                                            <  2:4022186/101‑1 (MQ=255)
                                                      aaGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGccc                                                                           >  1:4022578/1‑69 (MQ=255)
                                                      aaGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTa                                           >  1:4022576/1‑101 (MQ=255)
                                                       agagGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTaa                                          >  2:4022579/1‑101 (MQ=255)
                                                          ggTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAAtt                                       >  2:4022582/1‑101 (MQ=255)
                                                           gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAAttt                                      <  1:4022216/101‑1 (MQ=255)
                                                            ttACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTa                                     <  2:4022200/101‑1 (MQ=255)
                                                             tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATCCAGGTGGCTAAATTTAg                                    >  1:4022586/1‑101 (MQ=255)
                                                              aCCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGc                                   <  1:4022251/101‑1 (MQ=255)
                                                               ccGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCa                                  >  1:4022588/1‑101 (MQ=255)
                                                                 gAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCaa                                 <  1:4022450/101‑1 (MQ=255)
                                                                 gAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCaaa                                >  1:4022591/1‑101 (MQ=255)
                                                                 gAAACGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCaaa                                <  2:4022110/101‑1 (MQ=255)
                                                                  aaaCGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAAt                               >  2:4022593/1‑101 (MQ=255)
                                                                    aCGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCaaa                                >  1:4022595/1‑98 (MQ=255)
                                                                    aCGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCa                             <  2:4022062/101‑1 (MQ=255)
                                                                    aCGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCa                             <  1:4022189/101‑1 (MQ=255)
                                                                    aCGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCa                             <  1:4022277/101‑1 (MQ=255)
                                                                     cGATGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCaa                            <  1:4022290/101‑1 (MQ=255)
                                                                        tGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTc                                                    <  1:4022317/74‑1 (MQ=255)
                                                                        tGGACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATac                         <  1:4022131/101‑1 (MQ=255)
                                                                         ggACATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                        <  1:4022084/101‑1 (MQ=255)
                                                                           aCATCATCCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt                      >  2:4022598/1‑101 (MQ=255)
                                                                             atcatcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCa                                  <  1:4022197/87‑1 (MQ=255)
                                                                             atcatcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTc                    >  1:4022601/1‑101 (MQ=255)
                                                                               catcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTc                                                    <  2:4022318/67‑1 (MQ=255)
                                                                               catcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg                  >  2:4022604/1‑101 (MQ=255)
                                                                               catcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg                  <  2:4022041/101‑1 (MQ=255)
                                                                                atcCCCCATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgg                 >  1:4022606/1‑101 (MQ=255)
                                                                                  cccccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggg               <  1:4021967/101‑1 (MQ=255)
                                                                                   ccccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTaa                                          <  2:4022383/73‑1 (MQ=255)
                                                                                   ccccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACt                      <  2:4022163/93‑1 (MQ=255)
                                                                                    cccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTg                                               <  2:4022032/67‑1 (MQ=255)
                                                                                    cccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTaa                                          >  1:4022609/1‑72 (MQ=255)
                                                                                    cccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAAt                               >  2:4022608/1‑83 (MQ=255)
                                                                                    cccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg             <  2:4022074/101‑1 (MQ=255)
                                                                                     ccATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGt            <  1:4022148/101‑1 (MQ=255)
                                                                                      cATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggggg              <  1:4022137/98‑1 (MQ=255)
                                                                                      cATTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta           <  2:4022248/101‑1 (MQ=255)
                                                                                       aTTTTGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat          >  2:4022613/1‑101 (MQ=255)
                                                                                         tttGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtatt         <  2:4022017/101‑1 (MQ=255)
                                                                                          ttGTGGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtattat       >  2:4022616/1‑101 (MQ=255)
                                                                                           tgtgGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTattatt      >  1:4022617/1‑101 (MQ=255)
                                                                                             tgGACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGt    <  2:4022468/101‑1 (MQ=255)
                                                                                              ggACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATc                              <  2:4022003/74‑1 (MQ=255)
                                                                                               gACTG‑CCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTag  >  1:4022621/1‑101 (MQ=255)
                                                                                                    |                                                                                                
TTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCGGTAGACGATCCTGCCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAG  >  NC_000913/2765688‑2765884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A