Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F13 I1 R1	116	362.0	17214306	99.7%	17162663	98.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,762,152	G→A	G463G (GGC→GGT)	abpB ←	CP4‑57 prophage; putative helicase YfjK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,762,152	0	G	A	99.7%	1461.0 / NA	357	G463G (GGC→GGT)	abpB	CP4‑57 prophage; putative helicase YfjK
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (159/197); minor base C (0/1); total (159/198)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 357 total aligned reads displayed.

ACACGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATGCCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGCCCATGC  >  NC_000913/2762054‑2762249

 cacGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATAccc                                                                                                <  2:4977342/101‑1 (MQ=255)

 cacGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATAccc                                                                                                <  2:4977183/101‑1 (MQ=255)

  acGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCt                                                                                               <  1:4977265/101‑1 (MQ=255)

  acGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCt                                                                                               >  2:4978004/1‑101 (MQ=255)

  acGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCt                                                                                               >  1:4978007/1‑101 (MQ=255)

   cGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTg                                                                                              >  2:4978009/1‑101 (MQ=255)

    ggTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGa                                                                                             >  1:4978012/1‑101 (MQ=255)

     gTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGaa                                                                                            <  1:4977614/101‑1 (MQ=255)

      tCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAAt                                                                                           <  2:4977536/101‑1 (MQ=255)

      tCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAAt                                                                                           >  1:4978017/1‑101 (MQ=255)

       cGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATa                                                                                          <  2:4977629/101‑1 (MQ=255)

        gTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATAc                                                                                         <  2:4977638/101‑1 (MQ=255)

         tttATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATAcc                                                                                        >  2:4978021/1‑101 (MQ=255)

         tttATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATAcc                                                                                        >  1:4978024/1‑101 (MQ=255)

          ttATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATAcct                                                                                       <  2:4977469/101‑2 (MQ=255)

          ttATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCg                                                                                       >  2:4978029/1‑101 (MQ=255)

           tATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGa                                                                                      >  1:4978031/1‑101 (MQ=255)

            aTGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAg                                                                                     <  1:4977241/101‑1 (MQ=255)

            aTGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAg                                                                                     <  1:4977562/101‑1 (MQ=255)

            aTGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAg                                                                                     <  1:4977596/101‑1 (MQ=255)

              gAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCg                                                                                   <  1:4977442/101‑1 (MQ=255)

                aaaCCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGa                                                                                 <  2:4977380/101‑1 (MQ=255)

                aaaCCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGa                                                                                 >  2:4978037/1‑101 (MQ=255)

                aaaCCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGa                                                                                 >  1:4978036/1‑101 (MQ=255)

                 aaCCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGaa                                                                                >  2:4978044/1‑101 (MQ=255)

                 aaCCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGaa                                                                                >  1:4978043/1‑101 (MQ=255)

                   ccTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAata                                                                              >  1:4978048/1‑101 (MQ=255)

                       atcaAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCa                                                                          >  2:4978055/1‑101 (MQ=255)

                        tcaAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCAc                                                                         >  1:4978059/1‑101 (MQ=255)

                          aaaGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACct                                                                       >  2:4978062/1‑101 (MQ=255)

                          aaaGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACct                                                                       <  2:4977711/101‑1 (MQ=255)

                           aaGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACctc                                                                      <  1:4977603/101‑1 (MQ=255)

                              cGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttg                                                                   <  2:4977588/101‑1 (MQ=255)

                               gATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttga                                                                  <  1:4977361/101‑1 (MQ=255)

                               gATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttga                                                                  >  1:4978067/1‑101 (MQ=255)

                               gATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttga                                                                  <  1:4977576/101‑1 (MQ=255)

                                 tCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttgatt                                                                >  2:4978069/1‑101 (MQ=255)

                                 tCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttgatt                                                                <  2:4977313/101‑1 (MQ=255)

                                 tCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttgatt                                                                <  1:4977476/101‑1 (MQ=255)

                                  ccTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttgattg                                                               <  2:4977457/101‑1 (MQ=255)

                                   cTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttgattga                                                              >  2:4978075/1‑101 (MQ=255)

                                    tgtgAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTgag                                                             <  2:4977500/101‑1 (MQ=255)

                                      tgAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGAt                                                           >  1:4978078/1‑101 (MQ=255)

                                      tgAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGAt                                                           <  1:4977447/101‑1 (MQ=255)

                                       gAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGAtt                                                          <  2:4977604/101‑1 (MQ=255)

                                        aaaaCTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTg                                                         >  2:4978082/1‑101 (MQ=255)

                                         aaaCTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGt                                                        <  1:4977432/101‑1 (MQ=255)

                                         aaaCTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGt                                                        <  1:4977530/101‑1 (MQ=255)

                                         aaaCTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGt                                                        >  2:4978085/1‑101 (MQ=255)

                                          aaCTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCttgattg                                                               >  1:4978087/1‑93 (MQ=255)

                                           aCTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCt                                                      <  1:4977407/101‑1 (MQ=255)

                                             tCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTc                                                    <  2:4977900/101‑1 (MQ=255)

                                              cGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTcc                                                   >  1:4978094/1‑101 (MQ=255)

                                              cGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTcc                                                   >  2:4978093/1‑101 (MQ=255)

                                               ggACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCg                                                  <  2:4977359/101‑1 (MQ=255)

                                               ggACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCg                                                  >  2:4978097/1‑101 (MQ=255)

                                                gACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCgg                                                 <  1:4977641/101‑1 (MQ=255)

                                                  cAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGa                                               <  2:4977523/101‑1 (MQ=255)

                                                   aaGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGAt                                              >  1:4978102/1‑101 (MQ=255)

                                                     gTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGAttt                                            >  2:4978105/1‑101 (MQ=255)

                                                      tGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTtc                                           <  1:4977771/101‑1 (MQ=255)

                                                       ggTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTtcc                                          <  1:4976898/101‑1 (MQ=255)

                                                       ggTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTtcc                                          >  1:4978108/1‑101 (MQ=255)

                                                        gTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTtcct                                         <  1:4977682/101‑1 (MQ=255)

                                                          cTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTtcctcc                                       <  1:4977712/101‑1 (MQ=255)

                                                             gTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTtcctc                                        >  1:4978115/1‑97 (MQ=255)

                                                             gTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAgg                                    <  1:4977508/101‑1 (MQ=255)

                                                             gTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAgg                                    >  2:4978114/1‑101 (MQ=255)

                                                              ttGAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGc                                   <  2:4977389/101‑1 (MQ=255)

                                                                gAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCaa                                 <  2:4977278/101‑1 (MQ=255)

                                                                gAACGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCaa                                 <  1:4977334/101‑1 (MQ=255)

                                                                  aCGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCaaaa                               >  1:4978120/1‑101 (MQ=255)

                                                                   cGCTGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAg                              <  1:4977547/101‑1 (MQ=255)

                                                                      tGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGAtt                           <  2:4977577/101‑1 (MQ=255)

                                                                      tGGCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGAtt                           >  2:4978123/1‑101 (MQ=255)

                                                                       ggCTAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGAttt                          >  2:4978127/1‑101 (MQ=255)

                                                                          tAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGc                       >  2:4978133/1‑101 (MQ=255)

                                                                          tAACAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGc                       >  1:4978131/1‑101 (MQ=255)

                                                                            aCAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGcca                     <  2:4977673/101‑2 (MQ=255)

                                                                            aCAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcg                     <  2:4977234/101‑1 (MQ=255)

                                                                            aCAGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcg                     <  2:4977513/101‑1 (MQ=255)

                                                                              aGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcgac                   <  2:4977752/101‑1 (MQ=255)

                                                                              aGGTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcgac                   >  2:4978137/1‑101 (MQ=255)

                                                                               ggTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcgatg                  <  1:4977394/101‑3 (MQ=255)

                                                                                gTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcgacga                 <  2:4977415/101‑1 (MQ=255)

                                                                                gTTGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCcgacga                 >  2:4978142/1‑101 (MQ=255)

                                                                                 ttGATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGaa                >  1:4978144/1‑101 (MQ=255)

                                                                                   gATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGt              <  1:4977800/101‑1 (MQ=255)

                                                                                   gATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGt              <  2:4977745/101‑1 (MQ=255)

                                                                                   gATTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGt              <  2:4977566/101‑1 (MQ=255)

                                                                                    aTTGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTg             <  1:4977493/101‑1 (MQ=255)

                                                                                     ttGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGa            >  2:4978150/1‑101 (MQ=255)

                                                                                      tGGGGTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGaa           >  1:4978151/1‑101 (MQ=255)

                                                                                          gTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAg               <  1:4977653/93‑1 (MQ=255)

                                                                                          gTATCAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGcc       >  1:4978156/1‑101 (MQ=255)

                                                                                              cAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGCCCATg   <  1:4977306/101‑1 (MQ=255)

                                                                                              cAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGCCCATg   <  2:4977832/101‑1 (MQ=255)

                                                                                              cAATACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCAGACGAAGTGAACGCCCATg   >  1:4978161/1‑101 (MQ=255)

                                                                                               aaTACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGCCCATgc  <  2:4977688/101‑1 (MQ=255)

                                                                                               aaTACCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGCCCATgc  >  1:4978164/1‑101 (MQ=255)

ACACGGTCGTTTATGAAAACCTCATCAAAGCGATCCTGTGAAAACTCGGACAAGTGGTCTGGTTGAACGCTGGCTAACAGGTTGATTGGGGTATCAATGCCCTGAATACCGAGCGGAATATCCACCTCTTGATTGAGATTGTCTTCCGGGATTTCCTCCAGGCAAAAGATTTTGCCGACGAAGTGAACGCCCATGC  >  NC_000913/2762054‑2762249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A