Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I1 R1 114 305.6 14428468 99.7% 14385182 98.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,487,207 T→C V945A (GTC→GCC)  evgS → sensory histidine kinase EvgS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,487,2070TC100.0% 1149.1 / NA 274V945A (GTC→GCC) evgSsensory histidine kinase EvgS
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (147/127);  total (147/127)

Only 100 of 274 total aligned reads displayed.

AAATATGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGTCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGCCAG  >  NC_000913/2487109‑2487304
                                                                                                  |                                                                                                 
aaaTATGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCg                                                                                                 >  1:3774128/1‑101 (MQ=255)
 aaTATGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGa                                                                                                >  2:3774129/1‑101 (MQ=255)
  atatGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAg                                                                                               <  2:3773551/101‑1 (MQ=255)
  atatGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAg                                                                                               <  2:3773750/101‑1 (MQ=255)
  atatGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAg                                                                                               >  1:3774133/1‑101 (MQ=255)
   tatGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAgg                                                                                              >  2:3774137/1‑101 (MQ=255)
    atGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGc                                                                                             >  1:3774139/1‑101 (MQ=255)
     tGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCa                                                                                            >  1:3774141/1‑101 (MQ=255)
      gCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCaa                                                                                           <  1:3773436/101‑1 (MQ=255)
      gCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCaa                                                                                           <  1:3773699/101‑1 (MQ=255)
       cAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCaaa                                                                                          >  2:3774144/1‑101 (MQ=255)
        aGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCaaaa                                                                                         <  2:3773465/101‑1 (MQ=255)
        aGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCaaaa                                                                                         >  2:3774148/1‑101 (MQ=255)
        aGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCaaaa                                                                                         <  2:3773743/101‑1 (MQ=255)
         gggCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAg                                                                                        <  1:3773786/101‑1 (MQ=255)
         gggCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAg                                                                                        <  1:3773810/101‑1 (MQ=255)
            cGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAg                                                                                     >  2:3774155/1‑101 (MQ=255)
             gATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGa                                                                                    >  2:3774157/1‑101 (MQ=255)
               tttGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGaac                                                                                  <  2:3773701/101‑1 (MQ=255)
               tttGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGaac                                                                                  >  2:3774161/1‑101 (MQ=255)
               tttGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGaac                                                                                  <  1:3773686/101‑1 (MQ=255)
                ttGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGaaca                                                                                 >  1:3774162/1‑101 (MQ=255)
                    cATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAAccc                                                                             >  2:3774166/1‑101 (MQ=255)
                    cATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAAccc                                                                             >  1:3774167/1‑101 (MQ=255)
                     aTTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCa                                                                            >  1:3774172/1‑101 (MQ=255)
                      ttAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCAt                                                                           >  2:3774174/1‑101 (MQ=255)
                      ttAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCAt                                                                           >  2:3774176/1‑101 (MQ=255)
                      ttAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCAt                                                                           <  2:3773508/101‑1 (MQ=255)
                        aGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATca                                                                         >  1:3774179/1‑101 (MQ=255)
                         gAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATcac                                                                        >  2:3774182/1‑101 (MQ=255)
                         gAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATcac                                                                        <  1:3773725/101‑1 (MQ=255)
                           aaGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCacac                                                                      <  1:3773736/101‑1 (MQ=255)
                            aGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACt                                                                     <  2:3773657/101‑1 (MQ=255)
                            aGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACt                                                                     <  2:3773615/101‑1 (MQ=255)
                             gTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTa                                                                    <  2:3773681/101‑1 (MQ=255)
                                aTCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCt                                                                 >  1:3774189/1‑101 (MQ=255)
                                aTCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCt                                                                 >  2:3774187/1‑101 (MQ=255)
                                 tCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTg                                                                >  1:3774191/1‑101 (MQ=255)
                                    aGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGaaa                                                             >  2:3774195/1‑101 (MQ=255)
                                      gCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAg                                                           >  1:3774196/1‑101 (MQ=255)
                                       cATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGt                                                          >  2:3774198/1‑101 (MQ=255)
                                          aGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGa                                                       >  2:3774201/1‑101 (MQ=255)
                                           ggAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAg                                                      >  1:3774205/1‑101 (MQ=255)
                                             aacaacATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCa                                                    >  2:3774208/1‑101 (MQ=255)
                                              acaacaTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCat                                                   >  1:3774211/1‑101 (MQ=255)
                                               caacaTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCata                                                  >  1:3774214/1‑101 (MQ=255)
                                               caacaTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCata                                                  <  2:3773493/101‑1 (MQ=255)
                                                aacaTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCatat                                                 >  2:3774215/1‑101 (MQ=255)
                                                aacaTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCatat                                                 <  2:3773525/101‑1 (MQ=255)
                                                 acaTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATAtt                                                >  2:3774218/1‑101 (MQ=255)
                                                   aTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTaa                                              >  2:3774222/1‑101 (MQ=255)
                                                   aTTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTaa                                              <  1:3773871/101‑1 (MQ=255)
                                                      tACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCt                                                                 <  1:3773454/79‑1 (MQ=255)
                                                       aCGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTa                                               <  1:3773652/96‑1 (MQ=255)
                                                       aCGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATcgc                                          >  1:3774225/1‑101 (MQ=255)
                                                       aCGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATcgc                                          >  2:3774226/1‑101 (MQ=255)
                                                        cGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATcgcg                                         <  2:3773807/101‑1 (MQ=255)
                                                         gATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGaa                                                                                   <  1:3773764/58‑1 (MQ=255)
                                                         gATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCgg                                        >  1:3774232/1‑101 (MQ=255)
                                                          aTCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGga                                       <  2:3773971/101‑1 (MQ=255)
                                                            cacaATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGaaca                                                                                 >  2:3774235/1‑57 (MQ=255)
                                                            cacaATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGgatg                                     <  2:3773822/101‑1 (MQ=255)
                                                            cacaATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGgatg                                     <  2:3773800/101‑1 (MQ=255)
                                                             acaATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGgatga                                    >  1:3774236/1‑101 (MQ=255)
                                                             acaATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGgatga                                    <  2:3773773/101‑1 (MQ=255)
                                                               aaTCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatc                                  <  1:3773748/101‑1 (MQ=255)
                                                                aTCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatca                                 <  2:3773947/101‑1 (MQ=255)
                                                                aTCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatca                                 >  1:3774239/1‑101 (MQ=255)
                                                                 tCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatcat                                <  1:3773621/101‑1 (MQ=255)
                                                                 tCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatcat                                <  1:3773819/101‑1 (MQ=255)
                                                                 tCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatcat                                >  2:3774240/1‑101 (MQ=255)
                                                                    cGGTAGTAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGatca                                 <  2:3773677/97‑1 (MQ=255)
                                                                    cGGTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCg                             >  2:3774245/1‑101 (MQ=255)
                                                                     ggTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGa                            <  2:3773986/101‑1 (MQ=255)
                                                                     ggTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGa                            >  1:3774247/1‑101 (MQ=255)
                                                                      gTAGAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGAc                           >  2:3774250/1‑101 (MQ=255)
                                                                         gAAATTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCaa                        >  1:3774253/1‑101 (MQ=255)
                                                                           aaTTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACa                      >  2:3774255/1‑101 (MQ=255)
                                                                            aTTAGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAg                     <  2:3773596/101‑1 (MQ=255)
                                                                               aGCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCt                  <  1:3774150/101‑1 (MQ=255)
                                                                                gCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTa                 >  2:3774259/1‑101 (MQ=255)
                                                                                gCCAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTa                 <  1:3773673/101‑1 (MQ=255)
                                                                                  cAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCAt                                                                           <  2:3773720/41‑1 (MQ=255)
                                                                                  cAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTAtt               <  1:3773895/101‑1 (MQ=255)
                                                                                  cAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTAtt               >  2:3774263/1‑101 (MQ=255)
                                                                                  cAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTAtt               >  1:3774262/1‑101 (MQ=255)
                                                                                  cAGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTAtt               <  1:3773614/101‑1 (MQ=255)
                                                                                   aGCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTa              <  1:3773838/101‑1 (MQ=255)
                                                                                    gCAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTAc             <  1:3773844/101‑1 (MQ=255)
                                                                                     cAAGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACt            >  1:3774266/1‑101 (MQ=255)
                                                                                      aaGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTc           >  1:3774270/1‑101 (MQ=255)
                                                                                      aaGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTc           <  1:3773831/101‑1 (MQ=255)
                                                                                      aaGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTc           <  2:3773637/101‑1 (MQ=255)
                                                                                       aGTGGCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCa          <  2:3773905/101‑1 (MQ=255)
                                                                                          ggCGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAAc       <  1:3773533/101‑1 (MQ=255)
                                                                                            cGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGc     >  2:3774272/1‑101 (MQ=255)
                                                                                            cGACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGc     >  1:3774274/1‑101 (MQ=255)
                                                                                             gACTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGcc    >  1:3774277/1‑101 (MQ=255)
                                                                                              aCTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGCCa   <  2:3773868/101‑1 (MQ=255)
                                                                                               cTGCCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGCCAg  >  1:3774280/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
AAATATGCAGGGCGATTTGTCATTAGAAAGTCATCCAGGCATAGGAACAACATTTACGATCACAATCCCGGTAGAAATTAGCCAGCAAGTGGCGACTGTCGAGGCAAAAGCAGAACAACCCATCACACTACCTGAAAAGTTGAGCATATTAATCGCGGATGATCATCCGACCAACAGGCTATTACTCAAACGCCAG  >  NC_000913/2487109‑2487304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A