Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F13 I1 R1 114 305.6 14428468 99.7% 14385182 98.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,759,073 +C coding (89/1410 nt) yfjI → CP4‑57 prophage; protein YfjI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,759,0691.C100.0% 1074.1 / NA 254A29P (GCC→CCC) yfjICP4‑57 prophage; protein YfjI
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (131/123);  total (131/123)

Only 100 of 283 total aligned reads displayed.

AAATAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑CCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTACGTGGC  >  NC_000913/2758969‑2759164
                                                                                                     |                                                                                               
aaaTAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAgg                                                                                                  <  1:4180483/101‑1 (MQ=255)
aaaTAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAgg                                                                                                  <  2:4180761/101‑1 (MQ=255)
aaaTAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAgg                                                                                                  >  1:4181221/1‑101 (MQ=255)
  aTAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑cc                                                                                               >  1:4181225/1‑101 (MQ=255)
  aTAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑cc                                                                                               >  2:4181226/1‑101 (MQ=255)
   tAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑ccc                                                                                              <  1:4180740/101‑1 (MQ=255)
   tAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑ccc                                                                                              >  2:4181228/1‑101 (MQ=255)
    aaGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑cccc                                                                                             >  1:4181233/1‑101 (MQ=255)
    aaGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑cccc                                                                                             <  2:4180822/101‑1 (MQ=255)
     agagGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑ccccc                                                                                            >  2:4181234/1‑100 (MQ=255)
       agGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑ccccctc                                                                                          >  2:4181237/1‑98 (MQ=255)
        ggCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑ccccctca                                                                                         <  2:4180650/101‑5 (MQ=255)
           aTTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAgg                                                                                       >  2:4181241/1‑101 (MQ=255)
           aTTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAgg                                                                                       >  1:4181242/1‑101 (MQ=255)
                aTGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGa                                                                                  >  2:4181247/1‑101 (MQ=255)
                aTGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGa                                                                                  >  1:4181248/1‑101 (MQ=255)
                  gTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGAtt                                                                                <  2:4180725/101‑1 (MQ=255)
                    tCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATtgc                                                                              >  2:4181254/1‑101 (MQ=255)
                     cAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATtgct                                                                             <  2:4180836/101‑1 (MQ=255)
                     cAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATtgct                                                                             >  1:4181256/1‑101 (MQ=255)
                       aTGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATtgctgc                                                                           <  2:4180918/101‑1 (MQ=255)
                       aTGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATtgctgc                                                                           >  1:4181259/1‑101 (MQ=255)
                           tcgtcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCt                                                                       <  2:4180959/101‑1 (MQ=255)
                           tcgtcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCt                                                                       >  2:4181262/1‑101 (MQ=255)
                             gtcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGc                                                                     <  2:4180826/101‑1 (MQ=255)
                             gtcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGc                                                                     <  1:4180756/101‑1 (MQ=255)
                             gtcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGc                                                                     >  1:4181266/1‑101 (MQ=255)
                              tcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGct                                                                    <  1:4180858/101‑1 (MQ=255)
                              tcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGct                                                                    <  1:4180546/101‑1 (MQ=255)
                              tcCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGct                                                                    >  2:4181268/1‑101 (MQ=255)
                                cTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGctct                                                                  >  1:4181269/1‑101 (MQ=255)
                                cTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGctct                                                                  >  1:4181274/1‑101 (MQ=255)
                                cTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGctct                                                                  <  2:4180712/101‑1 (MQ=255)
                                 tttCGCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCtt                                                                 >  2:4181275/1‑101 (MQ=255)
                                 tttCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCtt                                                                 <  2:4180748/101‑1 (MQ=255)
                                 ttgcccTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTg                                                                                   <  2:4180518/80‑1 (MQ=255)
                                  ttCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTg                                                                >  1:4181278/1‑101 (MQ=255)
                                  ttCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTg                                                                <  2:4180797/101‑1 (MQ=255)
                                   tCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTgg                                                               <  1:4180847/101‑1 (MQ=255)
                                      cTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGt                                                            <  1:4180818/101‑1 (MQ=255)
                                        gTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTaa                                                          <  2:4180806/101‑1 (MQ=255)
                                         tAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATtg                                                                               >  2:4181283/1‑79 (MQ=255)
                                          aGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAAtt                                                        >  1:4181284/1‑101 (MQ=255)
                                             tGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTtct                                                     <  1:4180747/101‑1 (MQ=255)
                                             tGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTtct                                                     >  2:4181289/1‑101 (MQ=255)
                                             tGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTtct                                                     >  1:4181291/1‑101 (MQ=255)
                                              gCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTtctc                                                    >  2:4181293/1‑101 (MQ=255)
                                               cATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTctct                                                   >  2:4181296/1‑101 (MQ=255)
                                                aTTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCtt                                                  <  1:4180929/101‑1 (MQ=255)
                                                aTTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCtt                                                  >  1:4181298/1‑101 (MQ=255)
                                                 tttCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGTGTAATTTCTCTTg                                                 <  2:4181163/101‑1 (MQ=255)
                                                 tttCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTg                                                 <  1:4180798/101‑1 (MQ=255)
                                                  ttCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGc                                                <  2:4180702/101‑1 (MQ=255)
                                                   tCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGcc                                               >  1:4181302/1‑101 (MQ=255)
                                                     cTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTg                                             >  1:4181305/1‑101 (MQ=255)
                                                     cTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTg                                             <  2:4181045/101‑1 (MQ=255)
                                                      tAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGt                                            >  2:4181307/1‑101 (MQ=255)
                                                      tAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGt                                            >  1:4181309/1‑101 (MQ=255)
                                                        aaaTTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCa                                          <  2:4181002/101‑1 (MQ=255)
                                                          aTTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAAtt                                                        >  2:4181313/1‑85 (MQ=255)
                                                           ttATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGaa                                       <  1:4180677/101‑1 (MQ=255)
                                                            tATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAAc                                      >  1:4181316/1‑101 (MQ=255)
                                                             aTCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAAcc                                     <  1:4180409/101‑1 (MQ=255)
                                                             aTCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAAcc                                     >  1:4181320/1‑101 (MQ=255)
                                                              tCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCg                                    >  2:4181322/1‑101 (MQ=255)
                                                               cAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCgg                                   >  1:4181325/1‑101 (MQ=255)
                                                                 ggAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGAt                                 <  2:4180908/101‑1 (MQ=255)
                                                                  gAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGAtt                                >  2:4181328/1‑101 (MQ=255)
                                                                  gAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGAtt                                >  1:4181329/1‑101 (MQ=255)
                                                                  gAATGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGAtt                                <  1:4180773/101‑1 (MQ=255)
                                                                    aTGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGa                              <  2:4180830/101‑1 (MQ=255)
                                                                     tGCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGAt                             <  2:4180787/101‑1 (MQ=255)
                                                                      gCAATTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATg                            >  2:4181335/1‑101 (MQ=255)
                                                                      gCAATCTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATg                            >  1:4181334/1‑101 (MQ=255)
                                                                        aaTTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATg                            <  2:4180843/99‑1 (MQ=255)
                                                                        aaTTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGtt                          >  1:4181338/1‑101 (MQ=255)
                                                                        aaTTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGtt                          <  1:4180852/101‑1 (MQ=255)
                                                                         aTTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGttt                         >  2:4181341/1‑101 (MQ=255)
                                                                         aTTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGttt                         <  2:4180855/101‑1 (MQ=255)
                                                                         aTTTATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGttt                         <  1:4180872/101‑1 (MQ=255)
                                                                           ttATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGc                       <  2:4180881/101‑1 (MQ=255)
                                                                            tATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGcc                      >  2:4181346/1‑101 (MQ=255)
                                                                            tATGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGcc                      >  1:4181345/1‑101 (MQ=255)
                                                                             aTGAAGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCg                     >  2:4181349/1‑101 (MQ=255)
                                                                                aaGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGAtt                  <  2:4180766/101‑1 (MQ=255)
                                                                                 aGTGGAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGAtt                  >  2:4181353/1‑100 (MQ=255)
                                                                                    ggAACAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGaat              <  1:4180879/101‑1 (MQ=255)
                                                                                      aaCAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGaataa            >  1:4181355/1‑101 (MQ=255)
                                                                                        cAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATc          >  2:4181359/1‑101 (MQ=255)
                                                                                        cAGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATc          <  2:4180736/101‑1 (MQ=255)
                                                                                         aGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCt         <  1:4180956/101‑1 (MQ=255)
                                                                                         aGCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCt         <  1:4180893/101‑1 (MQ=255)
                                                                                          gCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTa        >  1:4181361/1‑101 (MQ=255)
                                                                                          gCATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTa        <  1:4180997/101‑1 (MQ=255)
                                                                                           cATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTAc       <  2:4180616/101‑1 (MQ=255)
                                                                                           cATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTAc       >  1:4181363/1‑101 (MQ=255)
                                                                                           cATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTAc       <  1:4181251/101‑1 (MQ=255)
                                                                                           cATACGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTAc       <  1:4180916/101‑1 (MQ=255)
                                                                                               cGCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTACGTgg   <  1:4180707/101‑1 (MQ=255)
                                                                                                gCAGGCCCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTACGTGGc  >  1:4181367/1‑101 (MQ=255)
                                                                                                     |                                                                                               
AAATAAGAGGCATTGCATGTTCAATGGTCGTCCTTTCCCTGTAGATGCATTTCCTAAAATTATCAGGAATGCAATTTATGAAGTGGAACAGCATACGCAGG‑CCCCTCAAGGTTTGATTGCTGCTTCTGCTCTTGGGGTAATTTCTCTTGCCTGTCAGAACCGGATTGATGTTTGCCGATTGAATAATCTACGTGGC  >  NC_000913/2758969‑2759164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A