Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 115 276.2 7960526 99.2% 7896841 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,166 C→G intergenic (‑280/‑21) U712_19190 ← / → U712_19195 PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,1660CG100.0% 828.6 / NA 210intergenic (‑280/‑21)U712_19190/U712_19195PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (128/82);  total (128/82)

Only 100 of 212 total aligned reads displayed.

TTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GT‑T‑T‑TTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTAAACATATTTGTTTCTAGCAAAATCCGTTATGTGCTCAGATCCATTTTGGCCAGCATGTTTATCGGATTCGGCAT  >  CP006881/3723020‑3723311
                                                                                                                                                      |                                                                                                                                                 
ttaagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaa                                                                                                                                                 <  2:3013867/147‑1 (MQ=255)
ttaagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaa                                                                                                                                                 <  2:3508236/147‑1 (MQ=255)
 taagaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAAAAGTTTGATAATACAAGTAGACAAAAATTCGTAAAAATTAAATGAGAAATACTTCACAATATCGTGCTAAACTATGCTCAATCATGaaa                                                                                                                                                >  1:3741614/3‑150 (MQ=255)
    gaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTAGACTATGCTCAATCATGaaagaa                                                                                                                                             >  2:2255164/1‑150 (MQ=255)
      aTACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaagaaag                                                                                                                                           >  1:3089199/1‑150 (MQ=255)
       tACGCTTTCATCATAAATCATGATAGCGTTTTCGACAGCT‑ATGT‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAAGTCCTTGTGAAATACTTCACAATATCGTGCTGTACTATGCGCAATCATGAAAGAAAGc                                                                                                                                          <  2:2423611/150‑1 (MQ=255)
        aCGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGGGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCa                                                                                                                                         >  1:3765559/1‑150 (MQ=255)
            tttCATCATAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAg                                                                                                                                        >  1:2262398/1‑147 (MQ=255)
               catcatAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaag                                                                                                                                  >  2:42082/1‑149 (MQ=255)
               catcatAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTACACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaag                                                                                                                                  >  2:2853934/1‑149 (MQ=255)
                atcatAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGaaaaga                                                                                                                                 >  2:2062163/1‑148 (MQ=255)
                 tcatAAACCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGAAATACCATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGAc                                                                                                                                <  1:3785793/150‑1 (MQ=255)
                  catAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACa                                                                                                                               <  1:1774053/150‑1 (MQ=255)
                   atAAATCATGATAGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACaa                                                                                                                              >  2:3075010/1‑150 (MQ=255)
                      aaTCATGATAGGGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATgg                                                                                                                           <  2:1780777/150‑1 (MQ=255)
                          aTGATAGCGTTTTCGTCAACT‑AT‑TCT‑TCTAGTTACATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATGAAGTGTGAAATACTTCACAAGATCGTGCTATACTATGCTCAATCATGACTGAAAGCAGGGAAAGTCACTGGAAAc                                                                                                                       >  2:2679936/1‑150 (MQ=255)
                            gATAGCGTTTTCGACAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAAGGGAAACTc                                                                                                                     >  2:1992364/1‑150 (MQ=255)
                               aGCGTTTTCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGGAAAGACAATGGAAACTCAAg                                                                                                                  >  2:1495793/1‑150 (MQ=255)
                               aGCGTTTTCGTCAACT‑AT‑T‑TCTTTAGTTAAATTGTTTGATGTAACATGAAGACAAAAATTTGTAATAATTAATTGTGAAATACTTCACAATATCGTGCTATACTAGGCTCAATCATGAAAGAAAGCAGGACAAGACAATGGAAACTCAAg                                                                                                                  <  2:1295627/150‑1 (MQ=255)
                                   ttttCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAtt                                                                                                              <  2:641886/150‑1 (MQ=255)
                                    tttCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGGAAAGACAATGGAAACTCAAGCAtta                                                                                                             >  2:821125/1‑149 (MQ=255)
                                     ttCGTCAACTATT‑T‑T‑TTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCAttac                                                                                                            <  2:3800213/150‑3 (MQ=255)
                                              tatt‑t‑t‑tttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGGAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTg                                                                                                   >  2:1112102/4‑150 (MQ=255)
                                                tt‑t‑t‑tttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGaa                                                                                                 <  1:984509/149‑1 (MQ=255)
                                                tt‑t‑t‑tttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGaa                                                                                                 <  1:634276/149‑1 (MQ=255)
                                                 t‑t‑t‑tttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAAc                                                                                                <  1:2341788/150‑1 (MQ=255)
                                                        ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGTACAGTa                                                                                            >  2:482305/1‑150 (MQ=255)
                                                        ttAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTa                                                                                            <  2:2405208/150‑1 (MQ=255)
                                                         tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTat                                                                                           >  1:3977264/1‑149 (MQ=255)
                                                         tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTat                                                                                           >  2:2148295/1‑149 (MQ=255)
                                                         tAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTat                                                                                           >  2:3249048/1‑149 (MQ=255)
                                                          aGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTatg                                                                                          >  2:44980/1‑148 (MQ=255)
                                                           gTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGc                                                                                         >  2:2934239/1‑150 (MQ=255)
                                                             tAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCtt                                                                                       <  2:283060/150‑1 (MQ=255)
                                                             tAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGGTGAACAGTATGCtt                                                                                       >  1:654681/1‑150 (MQ=255)
                                                              aaaTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCttt                                                                                      >  2:678772/1‑150 (MQ=255)
                                                                aTAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACCCAAGCATTACAAAAAGTTGGAAAGTATGCTTTgg                                                                                    >  1:311833/1‑149 (MQ=255)
                                                                 tAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAAGTTGAACAGGATGCTTTGaa                                                                                   >  1:3292769/1‑150 (MQ=255)
                                                                  aGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAGTATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaaa                                                                                  <  1:2912085/150‑2 (MQ=255)
                                                                     ttGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATGCTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGaaaaaa                                                                               <  2:2955869/150‑1 (MQ=255)
                                                                       gATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAca                                                                             <  1:3398003/150‑2 (MQ=255)
                                                                       gATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAAca                                                                             <  1:1970296/150‑2 (MQ=255)
                                                                           taacatgtAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAaaaacaaaac                                                                         <  2:3290865/143‑1 (MQ=255)
                                                                           taacatgtAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTGGAACAGTATGCTTTGAAaaaacaaaac                                                                         >  1:3372295/8‑150 (MQ=255)
                                                                               atgtAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACatat                                                                     >  1:777067/4‑150 (MQ=255)
                                                                               atgtAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACatat                                                                     <  2:856031/147‑1 (MQ=255)
                                                                               atgtAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACatat                                                                     >  1:1002719/4‑150 (MQ=255)
                                                                                  tAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATAttcg                                                                  >  1:3037254/1‑148 (MQ=255)
                                                                                   aGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATAttcgc                                                                 >  2:173331/1‑147 (MQ=255)
                                                                                    gACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATAttcgct                                                                <  1:2698036/150‑5 (MQ=255)
                                                                                     aCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATAttcgctt                                                               >  2:2386832/1‑145 (MQ=255)
                                                                                     aCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATAttcgctt                                                               <  1:1130590/150‑6 (MQ=255)
                                                                                     aCAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGGATGCTTTGAAAAAACAAAACATAttcgctt                                                               >  2:2543212/1‑145 (MQ=255)
                                                                                      cAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTc                                                              <  2:3105554/150‑1 (MQ=255)
                                                                                       aaaaaTTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTca                                                             >  2:3960791/1‑149 (MQ=255)
                                                                                             tCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGGTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCaaa                                                       >  1:96430/1‑150 (MQ=255)
                                                                                                tAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATc                                                    >  2:1360162/1‑150 (MQ=255)
                                                                                                 aaaaaTTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATcc                                                   <  1:870693/150‑1 (MQ=255)
                                                                                                  aaaaTTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCg                                                  >  2:311358/1‑150 (MQ=255)
                                                                                                   aaaTTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAAACATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGt                                                 >  2:9054/1‑150 (MQ=255)
                                                                                                    aattaattGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGtt                                                >  1:2653855/7‑150 (MQ=255)
                                                                                                     attaattGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGACAGAAAGCAGGAAAAGACAATGGAAGCTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTa                                               >  1:3824650/6‑150 (MQ=255)
                                                                                                     attaattGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTa                                               >  2:245279/6‑150 (MQ=255)
                                                                                                     attaattGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTa                                               >  2:1058169/6‑150 (MQ=255)
                                                                                                         attGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTAtgtg                                           >  2:1588551/2‑150 (MQ=255)
                                                                                                          ttGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGc                                          >  1:2124076/1‑150 (MQ=255)
                                                                                                            gtgAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCtt                                        >  2:3159782/1‑149 (MQ=255)
                                                                                                               aaataCTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGTAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCCTTATGTGCttcgg                                     >  1:3896830/1‑146 (MQ=255)
                                                                                                                    cTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCAt                                <  2:2653855/150‑1 (MQ=255)
                                                                                                                     ttCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCAtt                               <  2:228817/150‑1 (MQ=255)
                                                                                                                     ttCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCAtt                               >  1:2404804/1‑150 (MQ=255)
                                                                                                                       cacaGTATCGTGCTATACTATGCACAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCAtttt                             <  2:3741614/150‑1 (MQ=255)
                                                                                                                       cacaATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCAtttt                             <  1:312710/150‑1 (MQ=255)
                                                                                                                       cacaATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCAtttt                             >  2:1859339/1‑150 (MQ=255)
                                                                                                                         caATATCGTGCTATACTATGCTCATTCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAGAACATATTCGCTTCAAGCAAAATCCGTTATGGGCTTCGGTCCATTTTgg                           >  1:2567992/1‑150 (MQ=255)
                                                                                                                         caATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGGAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTCTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTTTGGGCTTCGGTCCATTTTgg                           >  2:1885090/1‑150 (MQ=255)
                                                                                                                         caATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGGTTTGAAAAAACAAAACATATTCGCTTCAACCAAAATCCGTTATGTGCTTCGGTCCATTTTgg                           >  1:1499694/1‑150 (MQ=255)
                                                                                                                          aaTATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGc                          >  2:557791/1‑150 (MQ=255)
                                                                                                                          aaTATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGc                          >  2:776444/1‑150 (MQ=255)
                                                                                                                           atatCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAGTCCGTTATGTGCTTCGGTCCATTTTGGcc                         >  2:3724166/1‑150 (MQ=255)
                                                                                                                            tatCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCa                        >  2:1651301/1‑150 (MQ=255)
                                                                                                                            tatCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTAATGTGCTTCGGTCCATTTTGGCCa                        <  1:42082/150‑1 (MQ=255)
                                                                                                                              tCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGGAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAgt                      >  1:3038119/1‑149 (MQ=255)
                                                                                                                              tCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAgt                      >  1:3603339/1‑149 (MQ=255)
                                                                                                                               cGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAgta                     >  2:731296/1‑148 (MQ=255)
                                                                                                                                    tataCTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATAttt                >  2:3196550/1‑150 (MQ=255)
                                                                                                                                    tataCTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATAttt                >  1:2760071/1‑150 (MQ=255)
                                                                                                                                     ataCTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTa               >  2:334796/1‑150 (MQ=255)
                                                                                                                                     ataCTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTa               >  1:3458041/1‑150 (MQ=255)
                                                                                                                                      tccTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTAt              <  1:821125/148‑1 (MQ=255)
                                                                                                                                      taCTATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACTAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTAt              <  2:2332575/150‑1 (MQ=255)
                                                                                                                                         tATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTgg           <  1:2936859/150‑1 (MQ=255)
                                                                                                                                         tATGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTgg           <  1:1709225/150‑1 (MQ=255)
                                                                                                                                           tGCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTggtt         <  1:1516445/150‑3 (MQ=255)
                                                                                                                                            gCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTGGttt        >  1:1874304/1‑150 (MQ=255)
                                                                                                                                            gCTCAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTGGttt        >  2:2109674/1‑150 (MQ=255)
                                                                                                                                              gcAATCATGAAGGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAACCAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTCCGGTCCATTTTGGCCAGTATATTTATTGGttttg      <  1:1607230/149‑3 (MQ=255)
                                                                                                                                               cAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTGGTTTTgg     <  1:3326873/150‑1 (MQ=255)
                                                                                                                                               cAATCATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTGGTTTTgg     <  2:3953979/150‑1 (MQ=255)
                                                                                                                                                  tcATGAAAGAAAGCAGGAAAAGACAATGGAAACTCAAGCATTACAAAAGGTTGAACAGTATGCTTTGAAAAAACAAAACATATTCGCTTCAAGCAAAATCCGTTATGTGCTTCGGTCCATTTTGGCCAGTATATTTATTGGTTTTGGCAt  >  1:1157671/2‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                 
TTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAACT‑GT‑T‑T‑TTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGAAAAAACAATGGAAACTCAAGCATTGCAAAAAGTTGAACAGTACGCTTTGAACAAACTAAACATATTTGTTTCTAGCAAAATCCGTTATGTGCTCAGATCCATTTTGGCCAGCATGTTTATCGGATTCGGCAT  >  CP006881/3723020‑3723311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A