Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	113	306.8	9564096	98.5%	9420634	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,725,031	C→T	A46A (GCG→GCA)	U712_19205 ←	Uncharacterized protein ywcI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,725,031	0	C	T	99.1%	1483.8 / NA	444	A46A (GCG→GCA)	U712_19205	Uncharacterized protein ywcI
Reads supporting (aligned to +/- strand): ref base C (3/1); new base T (191/247); total (194/250)
Fisher's exact test for biased strand distribution p-value = 3.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 456 total aligned reads displayed.

CCATGTAAAGATGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACA  >  CP006881/3724883‑3725177

 cATGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCtgc                                                                                                                                                  <  2:1174644/150‑1 (MQ=255)

   tGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGTAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAGAACCAAACGAGGCCTGCgg                                                                                                                                                >  2:622703/1‑150 (MQ=255)

   tGTAAAGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGGCCTGCgg                                                                                                                                                >  1:1848126/1‑150 (MQ=255)

    gTAAAGATGCGGGCCCGCCCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGc                                                                                                                                               <  1:2629594/150‑1 (MQ=255)

       aaGATGCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAACCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTg                                                                                                                                            <  1:4637916/150‑1 (MQ=255)

            gCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGGCCTGCGGCCTGCAcag                                                                                                                                       >  1:1900218/1‑148 (MQ=255)

            gCGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACACCTTCTTTTATAAAGCGCGGCGGCTCTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCAACCCCCATTCATAAAACGAAACGAGTACTGCGGCCTGCAcag                                                                                                                                       >  2:2207569/1‑148 (MQ=255)

             cGGGCCCGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCAcagc                                                                                                                                      >  1:669186/1‑150 (MQ=255)

                  ccgccctctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACagccgcct                                                                                                                                 <  2:3598780/145‑3 (MQ=255)

                   cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                >  2:1129612/2‑150 (MQ=255)

                   cgCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctt                                                                                                                                <  1:283336/149‑1 (MQ=255)

                    gCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCcttt                                                                                                                               >  2:194914/1‑150 (MQ=255)

                     ctctctCCTGCTTTGGTGATTCCTTGAAGGCTTGCAACCATCTTCTTTTATAAAGCGCGGCGGCCTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTc                                                                                                                              <  2:1858619/150‑1 (MQ=255)

                       ctctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                            <  1:927690/150‑1 (MQ=255)

                       ctctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                            >  1:1712260/1‑150 (MQ=255)

                       ccctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCtt                                                                                                                            <  1:3765561/148‑1 (MQ=255)

                        tctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCctttcttt                                                                                                                           >  1:2152572/1‑150 (MQ=255)

                         ctcCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTg                                                                                                                          <  1:3982992/150‑1 (MQ=255)

                           ccTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGGTTTCTGCTTTTCTTCCTCATTCACAGGCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGt                                                                                                                        >  1:410171/1‑150 (MQ=255)

                                 ttGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTAc                                                                                                                  >  2:3174705/1‑150 (MQ=255)

                                 ttGGCGATTACTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCCGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGGCGCCTTTCTTTGGTATGTAc                                                                                                                  >  1:2374382/1‑150 (MQ=255)

                                  tGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACg                                                                                                                 >  2:1442440/1‑150 (MQ=255)

                                   ggCGATTCCTTGAAGGGTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGc                                                                                                                >  2:386462/1‑150 (MQ=255)

                                      gATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTgg                                                                                                             >  2:4069438/1‑149 (MQ=255)

                                        ttCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGc                                                                                                           <  1:2430274/150‑1 (MQ=255)

                                        ttCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAAAGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGc                                                                                                           <  1:120811/150‑1 (MQ=255)

                                         tCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCCCAGCCATCCGCCATTCCTAAAACCAAACGAGGCCTGCGGCCCGCACAGCCCCCTTTCTTTGGTTTGTACGCTGGGcc                                                                                                          >  2:2465633/1‑150 (MQ=255)

                                          ccTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCg                                                                                                         <  1:770631/150‑1 (MQ=255)

                                            ttGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGaa                                                                                                       >  2:2314808/1‑150 (MQ=255)

                                               aaGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAg                                                                                                    <  1:640750/150‑1 (MQ=255)

                                                aGGCTTGCAACCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGa                                                                                                   <  1:2771060/150‑1 (MQ=255)

                                                aGGCTTGCAACCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGa                                                                                                   <  1:2979215/150‑1 (MQ=255)

                                                aGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCATTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCAGAAAACGAAACGGGTCCTGCGGCCTGCACAGGCGCCTTTCTTTGGTATGTTCACTGGGCCCAATAgg                                                                                                   >  1:1402004/1‑149 (MQ=255)

                                                     tGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCCCCATTCATAAAACGGAACGAGTCCCGCGGCCTCCGCAGCCCCCCTTCCTTGGTATGTCCGCTGGGCCCACCAGACcgcg                                                                                              >  2:832026/1‑150 (MQ=255)

                                                       cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGc                                                                                            <  1:1639644/150‑1 (MQ=255)

                                                       cAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGc                                                                                            <  2:3299711/150‑1 (MQ=255)

                                                        aaaCATCTTCTTTTATAAAGCGCGGCGGCTTTGGCTTTCTGGTTTTCTTCCTCATTCACAGCCATCCGCCCTTCAGAAAACGAAACGCGTCCTGCGGCCCGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAAACCGCGGCa                                                                                           >  2:1759197/1‑150 (MQ=255)

                                                        aaaCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGTGCCGAATAGACCGCGGCa                                                                                           >  2:1556913/1‑150 (MQ=255)

                                                         aaCATCTTCTTTTATAAAGCGCGGCGGTTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAAAGAGACGAGTCCCGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTGAGCCGGATAGACCGCGGccg                                                                                          >  2:4690659/1‑148 (MQ=255)

                                                          aCATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGc                                                                                         <  1:3070778/150‑1 (MQ=255)

                                                            aTCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCg                                                                                       >  2:4334022/1‑150 (MQ=255)

                                                               ttcttTTATAAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGCGCAg                                                                                    >  2:2906407/1‑150 (MQ=255)

                                                                 cttTTATAAAGCGCGGCGGCTTCCGCTTTCTGCTTTTCTTCCTCATTCCCAGCCATCCGCCATTCATAAAACGAAACGAGCCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGtt                                                                                  <  1:4141575/150‑1 (MQ=255)

                                                                     tataAAGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCCTCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTc                                                                              <  1:1048287/150‑1 (MQ=255)

                                                                         aaGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGGCCGCGGCAGGCGCAGGTTTTCTGTc                                                                          >  2:372659/1‑150 (MQ=255)

                                                                         aaGCGCGGCGGCTTTCCCTTTCTGCTTTTCTTCCTCATTCCCAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACATGCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTc                                                                          <  1:2086184/150‑1 (MQ=255)

                                                                          aGCGCGGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTcc                                                                         <  2:3219774/150‑1 (MQ=255)

                                                                            cgcgGCGGCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCCGCCTGCACAGCCGCCTTTCTTTGGGATGTTCGCTGAGCCCGATAGACCCCGGCAGCCCCAGGTTTTCTGTcccg                                                                       >  2:1046925/1‑148 (MQ=255)

                                                                              cggcggCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCg                                                                     <  1:3303857/150‑1 (MQ=255)

                                                                              cggcggCTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCg                                                                     <  1:3641179/150‑1 (MQ=255)

                                                                                  ggcTTTCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAc                                                                 <  1:1245277/150‑1 (MQ=255)

                                                                                      ttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGGCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGACGAATAGACCGCGGGAGGCGCAGATTTTTTCTGTGGCGTcacacac                                                             >  1:720731/1‑149 (MQ=255)

                                                                                      ttCGCTTTCTGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTGTCCGGCGTCACCCAg                                                             >  2:3080271/1‑150 (MQ=255)

                                                                                           tttctGCTTTTCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcat                                                        <  1:436392/150‑1 (MQ=255)

                                                                                            ttctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcatc                                                       <  2:700548/144‑1 (MQ=255)

                                                                                            ttctgcttttCTTCCTCATTCACAGCCATCCGCCATCCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcatc                                                       <  1:3751890/144‑1 (MQ=255)

                                                                                             tctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTtcatca                                                      <  2:1680092/145‑1 (MQ=255)

                                                                                              ctgcttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCaa                                                     <  1:3183626/146‑1 (MQ=255)

                                                                                               tgcttttCTTCCCCATCCCCAGCCCTCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTCCATCaaa                                                    <  2:2743633/147‑1 (MQ=255)

                                                                                                 cttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAACTTTTCTGTCCGGCGTCACCCAGGTCATCaaaaa                                                  >  2:1379636/2‑150 (MQ=255)

                                                                                                  ttttCTTCCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAg                                                 >  2:490433/1‑150 (MQ=255)

                                                                                                  ttttCTTCCCCATCCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAg                                                 <  2:4484311/150‑1 (MQ=255)

                                                                                                    ttcttcCTCATTCACAGCCATCCGCCATTCATAACACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGAc                                               <  1:1009870/150‑1 (MQ=255)

                                                                                                     tcttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGAATATCTGCCCGGCGTCACCCAGTTCACCAAAAAAAcc                                              >  1:1557463/1‑150 (MQ=255)

                                                                                                      cttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCCGTTTTTCTGTCCGGCGTCACCCCGTTCATCAAAAAGACCa                                             >  1:3823076/1‑150 (MQ=255)

                                                                                                       ttcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGACCAt                                            >  2:3532907/1‑150 (MQ=255)

                                                                                                        tcCTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCCAAAAGACCATc                                           >  2:2106383/1‑150 (MQ=255)

                                                                                                          cTCATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCCCCCAGTTCATCACAAAGACCATCca                                         >  1:4698035/1‑150 (MQ=255)

                                                                                                            catccccaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCcaca                                       <  1:3507074/144‑1 (MQ=255)

                                                                                                            cATTCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTTCGGCGGCACCCAGGTCCTCAAAAAGGCCATCcaca                                       >  2:2384921/1‑150 (MQ=255)

                                                                                                             aTTCACAGCCATCCGCCATTCCAAAAACGAAACGAGTCCTTCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCacac                                      <  1:3141263/150‑1 (MQ=255)

                                                                                                              ttCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGGCCGGCGTCACCCAGTTCATCAAAAAGACCATCCAcccc                                     >  2:4259519/1‑150 (MQ=255)

                                                                                                               tCACAGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGGCGCAGTATTTCCGTCCGGCGTCACCCCGTTCATCCAAAAGGCCATCCACAccc                                    >  1:145565/1‑150 (MQ=255)

                                                                                                                cacaCCCATCCGCCTTCCATAAAACGAAGCCAGTCCGCCGGCCTGCACAGCCGCCTTTCTTTGGTATGTCCGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCg                                   <  1:4511775/150‑1 (MQ=255)

                                                                                                                 acaGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGGCGCAGGTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGACCATCCACACCCgg                                  >  2:3988722/1‑149 (MQ=255)

                                                                                                                  caGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTa                                 <  1:1496267/150‑1 (MQ=255)

                                                                                                                   aGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTaa                                <  1:2913914/150‑1 (MQ=255)

                                                                                                                   aGCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGGACGCTGGGCCGAATAGACCGCGGCAGCCGCAGGTTTTCTGTCCGGCGTCACCCCGTTCATCAAAAAGACCATCCACACCCGCaa                                >  1:3392495/1‑150 (MQ=255)

                                                                                                                    gCCATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGGGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCCGTTCATCCAAAAGACCATCCACACCCCTaaa                               >  1:1762332/1‑150 (MQ=255)

                                                                                                                     ccATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAg                              <  1:1129612/150‑1 (MQ=255)

                                                                                                                     ccATCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAg                              <  1:2021380/150‑1 (MQ=255)

                                                                                                                       aTCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCACTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCCTAAAGAt                            >  2:3139202/1‑150 (MQ=255)

                                                                                                                       aTCCCCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGAt                            <  1:544719/150‑1 (MQ=255)

                                                                                                                        tCCGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCCCACCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATa                           <  1:1268498/150‑1 (MQ=255)

                                                                                                                         ccGCCATTCATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATAc                          >  1:4564974/1‑150 (MQ=255)

                                                                                                                               ttCATAAGACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGACTAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCaa                    <  1:167232/149‑1 (MQ=255)

                                                                                                                               ttCATAAAACGACACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCaa                    <  1:2314808/149‑1 (MQ=255)

                                                                                                                                 cATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCCGTTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGGCCATCCACACCCGGAAAGAAACCAGCAGAc                  >  2:4578654/1‑150 (MQ=255)

                                                                                                                                 cATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGCAAAGATACAAGCAAAc                  >  1:4766625/1‑150 (MQ=255)

                                                                                                                                 cATAAAACGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCAACCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCaaaa                  >  2:223485/1‑149 (MQ=255)

                                                                                                                                  ttataaCGAACCGACTCCGGCGGCCTGCACAGCCGCCTTCCTTTGGTATGTACGCCTAGCCGCATAGACTGCGGCAGCTTCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACg                 <  2:4198167/146‑1 (MQ=255)

                                                                                                                                    aaaaCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTTAAGATACAAGCAAACGtt               <  1:2505221/150‑1 (MQ=255)

                                                                                                                                     aaacgaaacgAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGTGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGCCACCCCGTTCATCCAAAAGACCATCCACACCCCTAAAGATACAAGCAAACGttt              >  1:2711633/1‑150 (MQ=255)

                                                                                                                                       aCGAAACGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGGTCATCAAAAAGACCATCCACACCCCTAAAGATACAAGCAAACGTTTCa            >  1:4311097/1‑150 (MQ=255)

                                                                                                                                        cGAAACGAGCCCTGCGGCCTGCCCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCAt           <  1:1334728/150‑1 (MQ=255)

                                                                                                                                          aaaCGAGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGTCGCAGTTTTTCTGTCCGGAGGCAAGCAGTTGAATAAGAAGACAGTCCACACCCGGAAAGGTACAAGCAAAGGATTCACAg         >  2:2066909/1‑150 (MQ=255)

                                                                                                                                             cgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCCCACCCGTAAAGATACAAGCAAACGTTTCATAGaaa      <  1:3849027/148‑1 (MQ=255)

                                                                                                                                             cgaGTCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGaaa      <  1:855534/148‑1 (MQ=255)

                                                                                                                                                gTCCTGCGGCCAGCTCAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGTATAGACCGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAAc   <  1:511661/150‑1 (MQ=255)

                                                                                                                                                 tCCTGCGGCCTGCACAGCCGCCTTTCTTTGGTATGTACGCTGAGCCGAATAGACCGCGGCAGCCGCAGTTTTTCAGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACa  <  1:3431813/150‑1 (MQ=255)

CCATGTAAAGATGCGGGCCAGCTCTCTCCTGCTTTGGCGATTCCTTGAAGGCTTGCAAACATCTTCTTTTATAAAGCGCGGCGGCTTTCGCTTTTTGTTTTTCTTCCTCATTCACAGCCATCCGCCACTCATAAAACGAAACAAGTCCCGCGGCCTGCACCGCCGCTTTTCTTTGGTATGTACGCTGAGCCGAATAGACAGCGGCAGCCGCAGTTTTTCTGTCCGGCGTCACCCAGTTCATCAAAAAGACCATCCACACCCGTAAAGATACAAGCAAACGTTTCATAGAAAAACA  >  CP006881/3724883‑3725177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A