Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F64 I1 R1
|
13 |
136.1 |
4526780 |
95.4% |
4318548 |
149.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,188,513 |
G→T |
G1055V (GGT→GTT) |
rpoC → |
RNA polymerase, beta prime subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,188,513 | 0 | G | T | 98.5%
| 430.9
/ NA
| 137 | G1055V (GGT→GTT) | rpoC | RNA polymerase, beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base T (64/71); total (64/73) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 143 total aligned reads displayed.
GCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTA > NC_000913/4188366‑4188659
|
cGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttct < 2:483174/150‑1 (MQ=255)
cGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttct > 2:502635/1‑150 (MQ=255)
tGGCGAACCGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttctgtc < 1:401175/150‑1 (MQ=255)
tGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGttctgtc < 1:1815806/150‑1 (MQ=255)
gCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCtt < 2:634640/150‑1 (MQ=255)
aCAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCt > 2:1294510/1‑150 (MQ=255)
ggTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTAGGCTTCACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCTACGAACTGACCGTTCTGTCTTCGCttgt < 2:1082352/150‑1 (MQ=255)
tGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTggtggt > 2:1370801/1‑150 (MQ=255)
tGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTggtggt > 2:753103/1‑150 (MQ=255)
tGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTAATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCt > 2:1601905/1‑150 (MQ=255)
ggcggcGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTg < 1:2236438/150‑1 (MQ=255)
ggcggcGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGGTATCACCGAAGTAACCGGTTTTGTACGCGTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTg < 2:664569/150‑1 (MQ=255)
gcggcgAAACCGTTGCAGACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTgg < 2:1376034/150‑1 (MQ=255)
cggcgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCGGGTGGTTCTGGa > 2:1850909/1‑150 (MQ=255)
ggcgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGAt > 1:1012615/1‑150 (MQ=255)
ggcgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGAt < 2:1011646/150‑1 (MQ=255)
cgAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTc < 2:400977/150‑1 (MQ=255)
gAAACCGCTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTcc < 2:1466694/150‑1 (MQ=255)
aaCCGTTGCAAACTGGGACCCGCACACCTTGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGc < 2:397965/150‑1 (MQ=255)
aaCAGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGATGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGCATTCCGc > 1:861591/1‑150 (MQ=255)
aCCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCa < 1:246252/150‑1 (MQ=255)
aCCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCa < 2:1822994/150‑1 (MQ=255)
aCCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCa > 2:1184905/1‑150 (MQ=255)
cGTTGCAAACTGGGACCCGCACACAATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAgc > 1:272403/1‑149 (MQ=255)
gCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGt > 1:2036004/1‑150 (MQ=255)
cAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTa > 1:705389/1‑150 (MQ=255)
aaCTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTAcc < 2:1607024/150‑1 (MQ=255)
cTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGGCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGc < 2:244366/150‑1 (MQ=255)
tGGGACCCGCACACCATGCCGGTTATCACCGAAGTAATCTGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCa < 2:1587312/150‑1 (MQ=255)
ggACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAgg < 2:1086012/150‑1 (MQ=255)
ggACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAgg < 1:657496/150‑1 (MQ=255)
cGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGCCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTa > 1:1791866/1‑150 (MQ=255)
cacaCCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTaaa < 2:1424435/150‑1 (MQ=255)
cacCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGa > 2:203023/1‑150 (MQ=255)
acCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGAt > 2:1256810/1‑150 (MQ=255)
cGGTTATCACCGAAGAAAGCGGTTTTGTACGCTTTACTGACATGATAGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGATGGTGGTTCGGGATTCCGCAGAACGTACCGCAGGTGGAAAAGATCTGCGTc > 2:1470865/1‑150 (MQ=255)
ggTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTcc > 1:272322/1‑150 (MQ=255)
gTTATCCCCGAAGTAAGCGGTTTTGTACGCTTCACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCg > 1:1574863/1‑150 (MQ=255)
gTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCg < 1:473982/150‑1 (MQ=255)
gTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACATATCGCAGGTGGTAAAGATCTGCGTCCg < 1:1850400/150‑1 (MQ=255)
cACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACt > 2:1162574/1‑150 (MQ=255)
ccGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACAGACTAACTGACAGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGa > 1:1382514/1‑150 (MQ=255)
cGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGaa > 1:686639/1‑150 (MQ=255)
aaGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGaaaa > 2:373738/1‑150 (MQ=255)
tAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTTCGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCg < 1:2066251/150‑1 (MQ=255)
tAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCg < 1:776591/150‑1 (MQ=255)
aGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGtt > 1:515369/1‑150 (MQ=255)
gCGGTTTTCTACGCTTTACTGACTTGAGCGACGTCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTg < 1:2066281/150‑1 (MQ=255)
ggTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGAt < 1:1581936/150‑1 (MQ=255)
ttttGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGc < 1:1184905/150‑1 (MQ=255)
ttttGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGc < 1:1270207/150‑1 (MQ=255)
ttGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGGCAGCCCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTc < 2:1390465/150‑1 (MQ=255)
tGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCa > 2:2135071/1‑150 (MQ=255)
gTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAg > 2:767565/1‑150 (MQ=255)
gTACGCGTTACTGTCATGCTCTTCGGCCATACCTTTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCGGGTGGTTCTGGATTCCGCAGAACGTACGTCAGGTGGTTAATATATGCGTGGGGCTGTTAATTTCGTTTATGCTCAg < 2:1048003/150‑1 (MQ=255)
tACGCTTTACTGACATGATGGCCGGCCAGAGCATTACGCGTCAGACCGACGAACTGACGGTTCTGTCTTCGCTGGTGGTTCTTGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAgg < 1:1787336/150‑1 (MQ=255)
tACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAgg > 1:751941/1‑150 (MQ=255)
aCGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAggg < 1:1370801/150‑1 (MQ=255)
cGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGt > 2:2179394/1‑150 (MQ=255)
cGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGt < 2:2234623/150‑1 (MQ=255)
gCTTTACTGACATGATCGCCGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTa < 2:2048774/150‑1 (MQ=255)
tttACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAac < 2:546793/150‑1 (MQ=255)
cttACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAac < 1:2223722/149‑1 (MQ=255)
ttACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGCCGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAATGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAacg > 2:827439/1‑150 (MQ=255)
tACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAacga < 1:290901/150‑1 (MQ=255)
cTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAacgccg > 1:1949582/1‑150 (MQ=255)
tGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGt > 1:916635/1‑150 (MQ=255)
gACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCAGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGTGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGtt > 2:715217/1‑150 (MQ=255)
cATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCt > 1:1875110/1‑150 (MQ=255)
cATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTGCTGTCTTCGCTGGTGGTTCTTGTTTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCt < 2:1434026/150‑1 (MQ=255)
tGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGa > 1:1617450/1‑150 (MQ=255)
tGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGa < 1:1601905/150‑1 (MQ=255)
tCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTGCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATcc < 1:2132389/150‑1 (MQ=255)
cGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATccc < 2:1617450/150‑1 (MQ=255)
gACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCa < 1:1877376/150‑1 (MQ=255)
cGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGGGGTGCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAgg < 2:576392/150‑1 (MQ=255)
cAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAcc < 1:1216011/150‑1 (MQ=255)
cAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAcc > 1:1396426/1‑150 (MQ=255)
cAGACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAcc < 2:1840295/150‑1 (MQ=255)
gACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCGGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGa < 1:1850909/150‑1 (MQ=255)
gACCATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGa < 1:1827857/150‑1 (MQ=255)
tccATTACGCGTGAGTCCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGGGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGat < 2:261471/149‑1 (MQ=255)
ccATTACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGata > 1:583679/1‑150 (MQ=255)
ttACGCGTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGc > 2:1227193/1‑150 (MQ=255)
gcgTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgc < 2:1787943/150‑1 (MQ=255)
gcgTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgc < 1:1286033/150‑1 (MQ=255)
cgTCAGACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgcg < 1:1156804/150‑1 (MQ=255)
gTCAGACCGACGAACTGACCGTTCTGTCTTCGCTTGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgcgc < 2:83288/150‑1 (MQ=255)
gACCGACGAACTGCCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACGGATATGGCAGCGCAGTa > 2:1612265/1‑150 (MQ=255)
gACCGACGAACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTa < 2:705389/150‑1 (MQ=255)
cgacgaACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACtt > 1:686497/1‑150 (MQ=255)
cgacgaACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACtt > 1:1328345/1‑150 (MQ=255)
acgaACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGTTGGTTTTGATCTGGGTCCGGCACTGAATTTCGTTGATGCTCAGGGTAACGACGTGCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTcc < 1:1013601/150‑1 (MQ=255)
cgaACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCt > 2:607867/1‑150 (MQ=255)
gaACTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTg > 1:1541109/1‑150 (MQ=255)
aaCTGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGc > 1:2153525/1‑150 (MQ=255)
cTGACCGTTCTGGCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCg < 1:588552/150‑1 (MQ=255)
tGACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCgg > 1:200063/1‑150 (MQ=255)
gACCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCggg > 1:1786953/1‑150 (MQ=255)
aCCGTTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGt < 1:1756997/150‑1 (MQ=255)
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GCGATGGCGAACAGGTTGCTGGCGGCGAAACCGTTGCAAACTGGGACCCGCACACCATGCCGGTTATCACCGAAGTAAGCGGTTTTGTACGCTTTACTGACATGATCGACGGCCAGACCATTACGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTA > NC_000913/4188366‑4188659
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
