Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F63 I0 R2	103	91.4	3852028	97.4%	3751875	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,633,785	C→A	7.0%	intergenic (‑40/‑12)	yjjX ← / → ytjC	non‑canonical purine NTP phosphatase, ITPase/XTPase/phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,633,785	0	C	A	7.0%	318.8 / 7.4	93	intergenic (‑40/‑12)	yjjX/ytjC	non‑canonical purine NTP phosphatase, ITPase/XTPase/phosphatase
Reads supporting (aligned to +/- strand): ref base C (34/52); new base A (3/4); total (37/56)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCG  >  NC_000913/4633656‑4633921

gtaGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAATAg                                                                                                                                <  2:1298506/138‑1 (MQ=255)

gtaGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAg                                                                                                                                <  2:1779874/138‑1 (MQ=255)

gtaGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAg                                                                                                                                <  1:1312857/138‑1 (MQ=255)

 taGGATCCTTCGCCGCAGATCTCGTGAACTGCCTGCAGAATGGCCTGTCTTTTAGCGGGATTGGTGGTCGCAGAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTAGAGCAGTTTACGGAAAAACAGc                                                                                                                               <  2:103892/139‑1 (MQ=255)

 taGGAACCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAAACAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGc                                                                                                                               <  2:898334/139‑1 (MQ=255)

    gATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATg                                                                                                                            >  1:722720/1‑140 (MQ=255)

    gATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATg                                                                                                                            >  2:1859387/1‑140 (MQ=255)

    gATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATg                                                                                                                            >  1:206683/1‑140 (MQ=255)

    gATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATg                                                                                                                            >  2:1217490/1‑140 (MQ=255)

     aTCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGTTTGGTGGTCGCACAGACAACTTTGTGCATAATCAGCATTACTCAGAATATTAACGTTACAGCAGTATACGGAAAAAAAGCATGt                                                                                                                           <  2:1327647/140‑1 (MQ=255)

     aTCCTTCGCCGAAGATCTCGGGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCTTCATTACTCAGAAAATTAACGTTCCAGCAGTATACGGAAAAAAAGCATGt                                                                                                                           <  2:1801851/140‑1 (MQ=255)

      tCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGtt                                                                                                                          >  2:816684/1‑140 (MQ=255)

      tCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGtt                                                                                                                          >  1:7907/1‑140 (MQ=255)

      tCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGtt                                                                                                                          >  1:7933/1‑140 (MQ=255)

      tCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGtt                                                                                                                          >  1:8142/1‑140 (MQ=255)

       ccTTCGCCGCATATCTCGTTAAATGCCCTCAGTATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGAGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  1:1913174/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCATAATGGCATGAATTTTATCGGGATTGGTGGTCGAACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  1:1230963/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAATTTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  2:1746902/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  2:1472253/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  1:929874/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  1:1525419/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  2:1746940/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  2:320807/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  2:357969/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  2:358268/140‑1 (MQ=255)

       ccTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTa                                                                                                                         <  1:533162/140‑1 (MQ=255)

         ttCGCCGAAGATCTCGTGAAATGCCTGAAGAATTGCCTGAATTTTATCTGGATTGGTGGTCTCACATAAAACTTGGTGCATAATCATCATTACTCATTAAATTAAATTTACAGCAGTATACGGAAATAAATTATGtttgt                                                                                                                       <  1:322926/140‑4 (MQ=255)

         ttCGCCAAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACa                                                                                                                       >  2:823156/1‑140 (MQ=255)

          tCGGCGAAGATATAGTGAAATGCTTGCAGAATGTACTGACTTTTTTCGGGATTGGTGGTCGCAGAGACTTCTTGTTGCATAATCAGCATTACTAAGAAATTTAAAGTTACAGCATTATACGGAAAAAAAGCATGTTTCAg                                                                                                                      <  2:936245/140‑1 (MQ=255)

          tCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAg                                                                                                                      >  1:1857924/1‑140 (MQ=255)

           cGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAACTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAgg                                                                                                                     <  1:1837341/140‑1 (MQ=255)

            gCCGATGATCTCGTGTTATGCCTGCAGCATGGGCTGTTTTTTAGCGGGATTGGTGGTCGCACAGACAACTTGTTGCTTAATCAGCATTACTCAGAAAATTAACGATACAGCAGTATACGGAAAAAAAGCATGTTACAGGt                                                                                                                    <  2:132091/140‑1 (MQ=255)

            gCCGAAGATCTCGTGAAATGCCTGCAGATTGGCCTGAATTTTAGCTTGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGt                                                                                                                    <  2:132117/140‑1 (MQ=255)

            gCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGt                                                                                                                    <  2:25673/140‑1 (MQ=255)

            gCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGt                                                                                                                    <  1:522705/140‑1 (MQ=255)

            gCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGt                                                                                                                    <  2:25535/140‑1 (MQ=255)

            gCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGt                                                                                                                    <  1:768285/140‑1 (MQ=255)

             ccGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGta                                                                                                                   >  1:207140/1‑140 (MQ=255)

                aaGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATAc                                                                                                                >  2:1213927/1‑140 (MQ=255)

                 aGATCTCGTGAAATGCCTGTAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAACATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGTTACAGGTATAcc                                                                                                               <  1:120211/140‑1 (MQ=255)

                     ctcGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCAGTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGt                                                                                                           >  1:855999/1‑140 (MQ=255)

                           aaaTGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCa                                                                                                     <  1:151162/140‑1 (MQ=255)

                                ccTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTg                                                                                                >  1:1086935/1‑140 (MQ=255)

                                ccTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTg                                                                                                <  1:680544/140‑1 (MQ=255)

                                  tGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGaa                                                                                              >  1:757365/1‑140 (MQ=255)

                                    cAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAATGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAAc                                                                                            <  1:14669/140‑1 (MQ=255)

                                     aGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACg                                                                                           <  2:722720/140‑1 (MQ=255)

                                         tGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGt                                                                                       >  2:476030/1‑140 (MQ=255)

                                            ccTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGa                                                                                    >  1:1722370/1‑140 (MQ=255)

                                                   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGa                                                                             <  1:190416/140‑1 (MQ=255)

                                                   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGa                                                                             <  2:417271/140‑1 (MQ=255)

                                                   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGa                                                                             <  2:8142/140‑1 (MQ=255)

                                                   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGa                                                                             <  2:7933/140‑1 (MQ=255)

                                                   tttAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATAAGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGa                                                                             <  2:7907/140‑1 (MQ=255)

                                                      aGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCAAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCg                                                                          <  2:1366885/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACATCTTGGTGCATAAACAGCTTTACTCAGAAAATAAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  1:1341702/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  2:1128607/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  1:1344250/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  1:1344828/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  1:1454516/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  1:1600438/140‑1 (MQ=255)

                                                        cGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGAc                                                                        <  1:1454788/140‑1 (MQ=255)

                                                            aTTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTAt                                                                    >  2:703558/1‑140 (MQ=255)

                                                             ttGGAGGTCGCACAGACAACTTGGTGCATCATCCCCAGTACTCAGAAAATTAACGTTACCGCCGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTAtt                                                                   <  2:176864/140‑1 (MQ=255)

                                                                   gtCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTCCAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGc                                                             <  2:545703/140‑1 (MQ=255)

                                                                   gtCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGc                                                             <  1:448563/140‑1 (MQ=255)

                                                                     cGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCa                                                           >  1:502744/1‑140 (MQ=255)

                                                                            aCAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGAc                                                    >  2:1655226/1‑140 (MQ=255)

                                                                            aCAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGAc                                                    >  2:187356/1‑140 (MQ=255)

                                                                                  tGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCg                                              >  2:222674/1‑140 (MQ=255)

                                                                                    gTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCt                                            >  2:516563/1‑140 (MQ=255)

                                                                                     tGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTg                                           <  1:1193062/140‑1 (MQ=255)

                                                                                     tGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTg                                           <  1:816684/140‑1 (MQ=255)

                                                                                      gCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGa                                          >  2:846539/1‑140 (MQ=255)

                                                                                      gCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGa                                          >  1:1866574/1‑140 (MQ=255)

                                                                                        aTAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGAcc                                        >  2:367100/1‑140 (MQ=255)

                                                                                            tCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTTCAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCa                                    <  2:424324/140‑1 (MQ=255)

                                                                                                 aTTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGt                               >  2:322480/1‑140 (MQ=255)

                                                                                                   tACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGa                             >  1:1771886/1‑140 (MQ=255)

                                                                                                   tACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGa                             >  2:1463993/1‑140 (MQ=255)

                                                                                                    aCTCAGAAAATTAACGTTACAGCAGTAAACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCTCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCATGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAg                            >  1:396660/1‑140 (MQ=255)

                                                                                                          aaaaTTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCTACAg                      >  1:1824309/1‑140 (MQ=255)

                                                                                                          aaaaTTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGCCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAg                      >  1:1883362/1‑140 (MQ=255)

                                                                                                               tAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGAt                 >  2:1418721/1‑140 (MQ=255)

                                                                                                                      aCAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTg          >  1:720458/1‑140 (MQ=255)

                                                                                                                      aCAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTg          >  1:114203/1‑140 (MQ=255)

                                                                                                                          cagTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCaa      >  2:107147/1‑140 (MQ=255)

                                                                                                                          cacgataCGGGAAATATGCATGTTCCAGGTATACGTTGTCCGCCACTGTGAATCGCAGTGGAACGCCGAGCGTCCGATGCAGGGCCAGACTGACAGCCCGCTCACCGCCAAAGGTGCCCAACTGGCGATGCAGGAGGCac      >  2:278652/5‑139 (MQ=255)

                                                                                                                           agTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAAc     <  1:703558/140‑1 (MQ=255)

                                                                                                                           agTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAAc     <  1:1815281/140‑1 (MQ=255)

                                                                                                                           agTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAAc     <  1:1815922/140‑1 (MQ=255)

                                                                                                                              ataCGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCg  <  2:233001/140‑1 (MQ=255)

                                                                                                                              ataCGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCg  <  2:232720/140‑1 (MQ=255)

GCAGGATCCTTCGCCGAAGATCTCGTGAAATGCCTGCAGAATGGCCTGAATTTTAGCGGGATTGGTGGTCGCACAGACAACTTGGTGCATAATCAGCATTACTCAGAAAATTAACGTTACAGCAGTATACGGAAAAAAAGCATGTTACAGGTATACCTAGTCCGCCACGGTGAAACGCAGTGGAACGCCGAGCGACGTATTCAGGGCCAGTCTGACAGCCCGCTGACCGCCAAAGGTGAGCAACAGGCGATGCAGGTGGCAACCCG  >  NC_000913/4633656‑4633921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A