Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F66 I0 R2
|
122 |
57.2 |
2468826 |
97.5% |
2407105 |
139.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,296,060 |
C→T |
8.2% |
intergenic (+266/+376) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,296,060 | 0 | C | T | 8.2%
| 283.5
/ 14.1
| 97 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (43/46); new base T (2/6); total (45/52) |
| Fisher's exact test for biased strand distribution p-value = 2.79e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC > NC_000913/4295926‑4296197
|
ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTg > 1:673897/1‑140 (MQ=32)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCTAACGccca < 1:1227376/140‑3 (MQ=12)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGa > 1:1155994/1‑140 (MQ=17)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGa > 1:609560/1‑140 (MQ=32)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGa > 1:223156/1‑140 (MQ=32)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGa > 1:221501/1‑140 (MQ=32)
tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCAAGACAGCGCAATATACTGATTTCTCGTGAGTTAGTAGGTCGGATACGGCGTTTACGCCGCGTGCGACATC‑AACGCCTGa > 1:347773/1‑140 (MQ=11)
tATGCCGCATCCGACAGCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAGCCGACATC‑AATGCCTGa > 1:480912/1‑140 (MQ=12)
cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCAACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGATGCGa < 2:325733/140‑1 (MQ=17)
cATCAGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACg < 2:1205378/140‑1 (MQ=17)
gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGc < 1:771208/140‑1 (MQ=33)
gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGc < 1:771496/140‑1 (MQ=33)
gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGc < 1:957822/140‑1 (MQ=33)
gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGc < 1:771201/140‑1 (MQ=33)
cATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATATCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCcg > 1:1186944/1‑140 (MQ=25)
aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCcgc < 2:398938/140‑1 (MQ=37)
tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACCGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGATGCGACGCTTGCcgcg < 1:25389/140‑1 (MQ=25)
cAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGATGCGACGCTTGCCGCGt < 1:305955/140‑1 (MQ=25)
cAACGCCTGATGCGACGCTTCACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATTGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGGGTTTACGCCGCATCCGACATC‑ACCGCCTGATGCGACGCTTGCCGCGt < 1:1007577/140‑1 (MQ=255)
cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGt < 1:1007563/140‑1 (MQ=37)
aCGCCTGATGCGACGCGTTACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCTTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGTCATC‑ATCTCCTGAGGCGACGATTGCCGCGTCt > 2:536920/1‑140 (MQ=11)
ccTGCTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTAt < 2:47566/140‑1 (MQ=37)
ccTGATGCGACGCTTCACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATTAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTAt < 2:440471/140‑1 (MQ=255)
ccTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGATGCGACGCTTGCCGCGTCTTAt < 2:1174450/140‑1 (MQ=25)
ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGATGCGACGCTTGCCGCGTCTTAt < 2:673897/140‑1 (MQ=25)
ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:465027/140‑1 (MQ=37)
cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:358546/140‑1 (MQ=37)
cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:358562/140‑1 (MQ=37)
tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 2:221189/140‑1 (MQ=37)
tGCGACGCTTTCCGCGTATTAACAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:893001/140‑1 (MQ=255)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:192521/140‑1 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATcctgt < 1:808900/140‑5 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:1038132/140‑1 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:822530/140‑1 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:647290/140‑1 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:647064/140‑1 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:822155/140‑1 (MQ=37)
tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:602045/140‑1 (MQ=37)
agCGACGCATAACGCGTCTTAACTGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGAAGGTCGGATAAGGCGTTAACGCCTCCTCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:192568/139‑1 (MQ=11)
aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTag > 2:493965/1‑139 (MQ=37)
aCGCTTAACGCGTCTTATCAGGCCT‑CGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 1:325733/1‑140 (MQ=255)
ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:1135581/140‑1 (MQ=37)
taCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa < 2:720171/139‑1 (MQ=37)
caCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTGAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa < 2:94647/139‑1 (MQ=37)
aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa < 1:797505/140‑1 (MQ=37)
aaCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGa < 1:797699/140‑1 (MQ=37)
cTTATCAGGCCTACGCCAGACAGCGCAAAAGCCAGCGTTAGCGTGAGTTTGTAGGTCGGCTAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCATACGCCAGACCgcgcc > 2:361607/1‑139 (MQ=11)
ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa < 1:1003724/140‑1 (MQ=37)
cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc < 1:1162442/140‑1 (MQ=37)
gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg > 2:251686/1‑140 (MQ=37)
gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCAAGACAGCGCAATAGCCTg > 2:229831/1‑140 (MQ=37)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:462789/109‑1 (MQ=38)
cGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 2:462789/1‑109 (MQ=40)
cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg < 2:64305/140‑1 (MQ=37)
cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg < 1:1013780/140‑1 (MQ=37)
aGACAGCGCTATAGCCTCATTTAGCGTGATTTTGTAGGTCGGTTAGGGCGGTTACGCCGCCTCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCAACGCCATACAGCGCAATAGCCTGATTTAGCGt < 2:540455/140‑1 (MQ=11)
aGACAGCGCAATAGCCTGATTGAGCGTGATTTTGTCGGTCGGATAAGGCGCTTAAGCCGCTCCCGACATC‑ACCGCCTGATGCGACGATTTCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGt < 2:824558/140‑1 (MQ=11)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACCGCGCAATCGCCTGATTTCGCGTg > 2:291543/1‑140 (MQ=255)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGtgtg < 1:374016/140‑1 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCTTg > 2:207592/1‑140 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 1:603993/1‑140 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg < 1:455072/140‑1 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 1:603987/1‑140 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:819248/1‑140 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:288097/1‑140 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg < 1:456474/140‑1 (MQ=37)
gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTAATCAGGCCTACGCCAGACCGCGCAATAGCCTGATTTAGCGTg > 2:1135425/1‑140 (MQ=255)
gACAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑ATCGCCTGATGCGACGCTGGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCgag > 2:1041566/1‑138 (MQ=11)
aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa < 1:784610/140‑1 (MQ=37)
aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa > 1:238937/1‑140 (MQ=37)
aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa > 2:305955/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGTTTTAGCGTGAtttg > 1:1173857/1‑139 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:1215826/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 2:698143/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:469822/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:869829/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:1174450/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAgttt > 1:999525/1‑140 (MQ=37)
cgcAATAGCCTGATTTAGCGTGATTTAGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTAACAGGCCTACGCCAGACTGCGCAATAGCCTGCTTTAGCGTGAttgg > 2:1180043/1‑138 (MQ=11)
gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg < 2:414009/140‑1 (MQ=37)
aGCCTGATTTAGGGTGTTTTTGTTGGTCGGTTAAGGGGTTTACGGCGCTTCCGCAATG‑TACGGCTGATGCGTCGCTTGCCGCGTCGGTTCAGGCCTACGCCTGCCAGGGCAATAGCCTGTTTTAGCGTGATTTTGTAGGt < 1:1165317/140‑1 (MQ=2)
tgttttAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa > 1:197923/4‑140 (MQ=37)
tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa > 2:395641/1‑140 (MQ=37)
cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt > 1:118934/1‑140 (MQ=37)
aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt > 1:855315/1‑140 (MQ=37)
aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt > 1:576411/1‑140 (MQ=37)
tCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCg < 1:1070233/140‑1 (MQ=37)
aTAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACAt > 1:292465/1‑140 (MQ=37)
ggCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc < 2:1215826/140‑1 (MQ=37)
tACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa > 1:468893/1‑140 (MQ=37)
cgcATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa > 2:489796/1‑140 (MQ=34)
c‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGTTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCATCGCCTGATGCGACGCTTAACGCGt > 2:462695/1‑140 (MQ=18)
c‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt < 1:629947/140‑1 (MQ=33)
c‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt > 2:462780/1‑140 (MQ=33)
c‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt < 1:1165663/140‑1 (MQ=33)
c‑AACGCCTGATGCGACGCTTGCCGCGACTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCATCGCCTGATGCGACGCTTAACGCGt > 2:461180/1‑140 (MQ=18)
caccGCCTGATGCGACGCTAGCCGCGTCTTCTCAGGCCTACGCCAGCCAGCGCAATAGCCTGAATTAGCGGGATTTTGTAGGACTGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgcga < 1:715097/137‑2 (MQ=11)
aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTc > 1:419778/1‑140 (MQ=32)
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TTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATC‑AACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTC > NC_000913/4295926‑4296197
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
