mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 8,332 | C→T | 5.8% | A32V (GCC→GTC) | talB → | transaldolase B |
| RA | 194,942 | Δ1 bp | 8.7% | coding (40/762 nt) | ispU → | undecaprenyl pyrophosphate synthase |
| RA | 211,354 | C→A | 6.1% | S559Y (TCT→TAT) | ldcC → | lysine decarboxylase 2, constitutive |
| RA | 222,958 | Δ1 bp | 100% | coding (126/576 nt) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| RA | 226,248 | C→A | 7.3% | noncoding (490/2904 nt) | rrlH → | 23S ribosomal RNA of rrnH operon |
| RA | 226,262 | A→T | 5.3% | noncoding (504/2904 nt) | rrlH → | 23S ribosomal RNA of rrnH operon |
| RA | 226,278 | G→A | 5.8% | noncoding (520/2904 nt) | rrlH → | 23S ribosomal RNA of rrnH operon |
| RA | 226,280 | A→G | 6.7% | noncoding (522/2904 nt) | rrlH → | 23S ribosomal RNA of rrnH operon |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 344,938 | G→T | 6.0% | G255C (GGT→TGT) | yahL → | uncharacterized protein |
| RA | 377,374 | T→C | 5.1% | intergenic (+63/+161) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 459,667 | G→T | 11.1% | A260A (GCG→GCT) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 459,751 | G→T | 12.7% | A288A (GCG→GCT) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 513,920 | C→A | 5.6% | intergenic (+52/‑73) | ybaT → / → cueR | putative amino acid transporter/copper‑responsive regulon transcriptional regulator |
| RA | 566,173 | C→G | 15.3% | pseudogene (204/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 566,205 | T→C | 17.3% | pseudogene (172/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 566,245 | G→A | 17.4% | pseudogene (132/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 566,323 | C→T | 8.9% | pseudogene (54/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 566,326 | T→C | 8.9% | pseudogene (51/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 566,332 | T→G | 8.8% | pseudogene (45/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 590,608 | C→A | 5.9% | R116L (CGA→CTA) | nfrA ← | bacteriophage N4 receptor, outer membrane subunit |
| RA | 699,468 | A→C | 6.5% | intergenic (‑291/+106) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 702,583 | C→T | 5.1% | D57N (GAT→AAT) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 845,660 | C→A | 5.6% | intergenic (‑180/+81) | ybiO ← / ← glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit |
| RA | 874,183 | G→A | 12.5% | C402Y (TGT→TAT) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 961,268 | A→T | 9.1% | K23M (AAG→ATG) | cmk → | cytidylate kinase |
| RA | 1,012,153 | C→T | 9.3% | P51P (CCC→CCT) | pqiA → | paraquat‑inducible, SoxRS‑regulated inner membrane protein |
| RA | 1,155,411 | G→A | 6.9% | V96V (GTG→GTA) | tmk → | thymidylate kinase |
| RA | 1,173,753 | G→A | 6.5% | A71V (GCG→GTG) | mfd ← | transcription‑repair coupling factor |
| RA | 1,220,860 | G→T | 6.7% | pseudogene (1260/2574 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,270,419 | T→C | 8.6% | noncoding (27/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,287,187 | A→T | 7.5% | noncoding (50/171 nt) | rttR ← | rtT sRNA, processed from tyrT transcript |
| RA | 1,287,202 | A→G | 9.8% | noncoding (35/171 nt) | rttR ← | rtT sRNA, processed from tyrT transcript |
| RA | 1,328,032 | C→A | 5.8% | W109L (TGG→TTG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
| RA | 1,331,036 | G→C | 9.3% | intergenic (‑368/‑12) | yciN ← / → topA | DUF2498 protein YciN/DNA topoisomerase I, omega subunit |
| RA | 1,381,217 | G→T | 8.9% | pseudogene (397/957 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,405,543 | C→A | 8.7% | P268Q (CCG→CAG) | abgR → | putative DNA‑binding transcriptional regulator of abgABT operon |
| RA | 1,428,541 | A→G | 5.5% | R62R (CGT→CGC) | insH1 ← | IS5 transposase and trans‑activator |
| RA | 1,466,858 | T→C | 7.3% | pseudogene (1467/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,478,386 | C→A | 7.6% | S54* (TCA→TAA) | ynbB → | putative CDP‑diglyceride synthase |
| RA | 1,493,666 | G→A | 9.1% | E399E (GAG→GAA) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,527,358 | A→G | 6.0% | intergenic (+206/‑544) | yncH → / → rhsE | IPR020099 family protein/pseudogene, Rhs family |
| RA | 1,549,077 | G→T | 9.9% | P559P (CCG→CCT) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,549,091 | C→T | 7.7% | P564L (CCG→CTG) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,596,524 | C→A | 9.1% | pseudogene (1464/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,670,751 | C→T | 6.4% | I351I (ATC→ATT) | ynfM → | putative arabinose efflux transporter |
| RA | 1,790,389 | G→T | 13.9% | Q286K (CAA→AAA) | ydiU ← | UPF0061 family protein |
| RA | 1,872,469 | C→T | 8.2% | Y143Y (TAC→TAT) | yeaJ → | putative diguanylate cyclase |
| RA | 1,907,682 | G→A | 6.1% | intergenic (‑91/+579) | yobF ← / ← yebO | DUF2527 family heat‑induced protein/putative inner membrane protein |
| RA | 1,914,813 | T→C | 12.5% | N2D (AAC→GAC) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,994,311 | G→T | 7.1% | F132L (TTC→TTA) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 1,999,315 | C→A | 8.9% | E56* (GAA→TAA) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,016,908 | C→A | 6.0% | R119S (CGC→AGC) | fliI → | flagellum‑specific ATP synthase |
| RA | 2,019,349 | G→A | 6.1% | G322S (GGC→AGC) | fliK → | flagellar hook‑length control protein |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,037,789 | C→A | 9.5% | D122Y (GAT→TAT) | yedV ← | putative sensory kinase in two‑component regulatory system with YedW |
| RA | 2,046,314 | G→A | 10.8% | L459L (CTG→CTA) | yeeJ → | putative adhesin |
| RA | 2,088,950 | G→T | 5.3% | S60Y (TCT→TAT) | yeeZ ← | putative epimerase |
| RA | 2,089,011 | C→A | 10.5% | A40S (GCC→TCC) | yeeZ ← | putative epimerase |
| RA | 2,128,645 | C→A | 7.5% | D82Y (GAT→TAT) | wcaF ← | putative acyl transferase |
| RA | 2,158,616 | C→T | 7.4% | V77V (GTC→GTT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,192,944 | C→A | 8.0% | intergenic (‑148/+115) | yehE ← / ← mrp | DUF2574 family protein/antiporter inner membrane protein |
| RA | 2,358,043 | C→A | 7.5% | *268L (TGA→TTA) | rhmA ← | 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,581,618 | G→A | 7.5% | V661V (GTG→GTA) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,587,172 | C→T | 5.5% | A481V (GCG→GTG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,595,174 | G→T | 5.5% | S229* (TCA→TAA) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,637,133 | G→T | 9.2% | S75* (TCG→TAG) | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,767,845 | G→A | 7.3% | G46R (GGG→AGG) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,776,388 | G→T | 8.5% | M1M (ATG→ATT) † | yfjY → | CP4‑57 prophage; putative DNA repair protein |
| RA | 2,778,170 | T→C | 14.6% | V1519V (GTA→GTG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,818,046 | A→G | 12.9% | intergenic (‑186/+13) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,818,049 | T→A | 7.3% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,830,202 | G→T | 6.0% | L130L (CTG→CTT) | srlQ → | D‑arabinose 5‑phosphate isomerase |
| RA | 2,832,097 | C→A | 5.7% | G65C (GGT→TGT) | norR ← | anaerobic nitric oxide reductase DNA‑binding transcriptional activator |
| RA | 2,843,836 | G→T | 5.1% | L125L (CTC→CTA) | hycG ← | hydrogenase 3 and formate hydrogenase complex, HycG subunit |
| RA | 2,888,575 | G→T | 8.5% | R509S (CGC→AGC) | cysI ← | sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| RA | 2,904,212 | G→A | 100% | intergenic (+838/+535) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 3,036,288 | G→T | 8.3% | intergenic (‑6/+85) | prfB ← / ← recJ | peptide chain release factor RF‑2/ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,142,565 | A→G | 6.3% | L142P (CTG→CCG) | hybC ← | hydrogenase 2, large subunit |
| RA | 3,173,553 | C→A | 6.1% | R615L (CGC→CTC) | parE ← | DNA topoisomerase IV, subunit B |
| RA | 3,200,251 | G→T | 6.0% | H239N (CAT→AAT) | ygiF ← | inorganic triphosphatase |
| RA | 3,258,115 | G→T | 6.8% | intergenic (‑105/+170) | yhaO ← / ← tdcG | putative transporter/L‑serine dehydratase 3, anaerobic |
| RA | 3,274,579 | C→A | 7.2% | W110L (TGG→TTG) | garP ← | putative (D)‑galactarate transporter |
| RA | 3,365,487 | C→T | 5.1% | pseudogene (303/367 nt) | yhcE → | pseudogene fragment; interrupted by IS5 |
| RA | 3,389,825 | G→T | 9.8% | M102I (ATG→ATT) | aaeR → | transcriptional regulator for aaeXAB operon |
| RA | 3,420,607 | G→T | 5.7% | V158V (GTG→GTT) | yhdX → | putative amino acid ABC transporter permease |
| RA | 3,423,531 | T→G | 8.7% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,440,923 | C→A | 100% | G36V (GGC→GTC) | rpoA ← | RNA polymerase, alpha subunit |
| RA | 3,449,344 | A→G | 5.3% | A180A (GCT→GCC) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,504,861 | T→A | 11.8% | intergenic (+78/+74) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,867 | T→A | 16.4% | intergenic (+84/+68) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,873 | T→A | 19.1% | intergenic (+90/+62) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,875 | T→A | 15.5% | intergenic (+92/+60) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,533,137 | G→T | 7.7% | G107V (GGC→GTC) | pck → | phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,593,141 | C→A | 5.3% | E99D (GAG→GAT) | livF ← | branched‑chain amino acid ABC transporter ATPase |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,928,424 | C→T | 6.9% | D394N (GAT→AAT) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,936,090 | T→A | 5.4% | L268Q (CTG→CAG) | rbsC → | D‑ribose ABC transporter permease |
| RA | 3,957,410 | G→T | 5.6% | V137V (GTC→GTA) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 3,957,432 | G→T | 5.1% | A130E (GCA→GAA) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 3,982,860 | C→A | 7.1% | intergenic (+49/‑98) | proM → / → aslB | tRNA‑Pro/putative AslA‑specific sulfatase‑maturating enzyme |
| RA | 4,003,800 | G→T | 8.8% | R127R (CGG→AGG) | rarD ← | putative chloramphenical resistance permease |
| RA | 4,082,381 | C→A | 6.2% | D127Y (GAC→TAC) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,266,437 | C→A | 7.0% | P219Q (CCG→CAG) | alr → | alanine racemase, biosynthetic, PLP‑binding |
| RA | 4,296,060 | C→T | 8.2% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,310,158 | C→A | 5.4% | D275Y (GAC→TAC) | alsA ← | D‑allose ABC transporter ATPase |
| RA | 4,397,505 | G→A | 8.6% | E32K (GAA→AAA) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,433,483 | A→G | 6.0% | V181A (GTG→GCG) | qorB ← | NAD(P)H:quinone oxidoreductase |
| RA | 4,484,773 | A→G | 5.6% | T393T (ACT→ACC) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| RA | 4,484,779 | A→G | 5.8% | H391H (CAT→CAC) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| RA | 4,518,816 | A→G | 6.7% | pseudogene (96/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,545,735 | G→T | 9.5% | G214W (GGG→TGG) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| RA | 4,559,943 | C→A | 6.9% | G20C (GGC→TGC) | yjiG ← | SpmB family inner membrane protein |
| RA | 4,568,118 | T→C | 5.3% | K134K (AAA→AAG) | mdtM ← | multidrug efflux system protein |
| RA | 4,633,743 | C→T | 100% | M1M (ATG→ATA) † | yjjX ← | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 773047 | 774161 | 1115 | 11 [0] | [10] 11 | cydB | cytochrome d terminal oxidase, subunit II |
| * | * | ÷ | NC_000913 | 1037724 | 1039292 | 1569 | 14 [9] | [10] 11 | cbdA | cbdA |
| * | * | ÷ | NC_000913 | 1166069 | 1167371 | 1303 | 11 [10] | [0] 13 | [ndh] | [ndh] |
| * | * | ÷ | NC_000913 | 3423782–3424234 | 3424518–3424238 | 5–737 | 12 [10] | [9] 17 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375000 = | 65 (1.110) | 8 (0.140) | 3/230 | NT | 11.0% | noncoding (71/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 377353 = | NA (NA) | noncoding (19/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 375202 = | 64 (1.160) | 6 (0.110) | 4/218 | NT | 8.6% | noncoding (273/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 377353 = | NA (NA) | noncoding (19/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 375219 = | 59 (1.040) | 5 (0.100) | 4/196 | NT | 8.8% | noncoding (290/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 377335 = | NA (NA) | noncoding (1/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 566098 = | 74 (1.140) | 6 (0.110) +GAGAGGAGGATTACAAA |
5/222 | NT | 7.6% | pseudogene (279/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| ? | NC_000913 | 4397412 = | 95 (1.460) | coding (1/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
| * | ? | NC_000913 | 1207790 = | 11 (0.170) | 15 (0.260) | 13/224 | NT | 57.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 13 (0.230) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 8 (0.120) | 24 (0.420) | 13/224 | NT | 70.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 13 (0.230) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 37 (0.590) | 22/248 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 2466384 | 88 (1.350) | 9 (0.160) | 7/224 | NT | 13.6% | intergenic (+1/‑161) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| ? | NC_000913 | 2476600 = | 37 (0.650) | intergenic (+2/+94) | pawZ/dsdC | tRNA‑OTHER/dsd operon activator; autorepressor | |||||
| * | ? | NC_000913 | 4373286 = | 43 (0.820) | 31 (0.590) | 4/206 | NT | 41.9% | noncoding (90/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4374508 = | NA (NA) | noncoding (11/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||