Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F46 I0 R1
|
97 |
59.2 |
2066676 |
97.0% |
2004675 |
148.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,362,553 |
G→T |
54.1% |
noncoding (74/76 nt) |
pheU ← |
tRNA‑Phe |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,362,553 | 0 | G | T | 54.1%
| 4.5
/ 65.3
| 68 | noncoding (74/76 nt) | pheU | tRNA‑Phe |
| Reads supporting (aligned to +/- strand): ref base G (16/15); new base T (25/12); total (41/27) |
| Fisher's exact test for biased strand distribution p-value = 2.18e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.12e-01 |
CGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGA > NC_000913/4362408‑4362700
|
cGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGc > 1:762829/1‑149 (MQ=255)
cGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGc > 2:629065/1‑149 (MQ=255)
aTTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCg < 2:893486/149‑1 (MQ=255)
aTTGGGATATGCCCGCAAAATGCTTGTGATGTGGGGAGAATCTGGATGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTAAGTGGAGGTCAGTTTTTATGAATTTGGTggcag > 1:522440/1‑145 (MQ=255)
atatGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAACCGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCG < 1:550774‑M1/149‑1 (MQ=255)
atatGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCG < 2:413250‑M1/149‑1 (MQ=255)
atatGCCCGCAAATTGCTGCTGATGTGGGGAGAATGTGGTAGAGTTCGGGATAATTGATTTGGAGGCAGAACGCTAAAATCGTGCCGTCCTGAAACGAAAAACGCACCTCCCTGGACGGCCGTTTATATGAATTTGGTGCCCGGACTCg < 2:325838/149‑1 (MQ=255)
gCCCGCAAATTGCTGGTGATGTGGGCAGAATCTGGTGGAGGTCGGTAGAATTGATTTGGAGGCAGCACGCTTAAATCGTGGCGTCCTGAATCGAAAAACGGACCTCGGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAAt < 1:322869/149‑1 (MQ=255)
gCAAATTGCTGGGGATGTGGGGAGAAGCTGGTTGCGTCCGGTAGAATTGATAGGGAGGCAGAACGCGTAACTCGTGGCGGCCTGAAACGCAAACCGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGaa < 2:203006/149‑1 (MQ=255)
gTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACg > 2:973841/1‑149 (MQ=255)
caggagcggACAATCAGGTTGAGAGCGCTCGAATTGATTTGGAGGCACAACGCTCAAATCGAGGCGTCCTGACACGAAAAACGGACCTCCGGGGAGGTCCGTTTATATGAATTTCGTGCGCGGACTCGCAAACGAACCAACGACACggg < 2:98731/142‑1 (MQ=255)
gggAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGCACCAAGGACACGGGGAtttt > 2:414430/1‑149 (MQ=255)
gagaATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCa > 1:217189/1‑149 (MQ=255)
gagaATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGAGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCa > 1:71554/1‑149 (MQ=255)
tCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATccc > 1:329806/1‑149 (MQ=255)
tCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGTAAACCGGGATTTTCAATccc > 2:617392/1‑149 (MQ=255)
gtgTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCt < 1:997840/147‑1 (MQ=255)
ggTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTg > 2:183367/1‑149 (MQ=255)
ggTTGAGTTCGGTAGAATAGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTCCCCGGACACGGAATCGAACCAAGGACACGGGGATATTCAATAACCTg > 1:740458/1‑149 (MQ=39)
gcggAGTTCGGTAGTATTGATTTGGAGGAAGAACGCTTAAATCGTGGCGTCCTGATACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGc < 1:227755/146‑1 (MQ=255)
gTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGc < 1:223996/149‑1 (MQ=255)
gAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGCACCAAGGACACGGGGATTTTCAATCCCCTGctct > 1:643683/1‑149 (MQ=255)
gTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGTAATCGAACCAAGGACACGGGGATTTTCAATCCACTGCTCTACCGACt > 1:194216/1‑149 (MQ=255)
aGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGa < 2:942554/149‑1 (MQ=255)
aGAATTGATTAGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCTGGGAGGTCCGTATATATGAATTTGTTGCCCGGACTCGGAATCGAACCACGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGa < 2:890347/149‑1 (MQ=37)
gAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTATATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACTGGGATTTTCAATCCACAGCTCTACCGACTGAg > 1:479925/1‑149 (MQ=38)
aaTTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGc > 2:940512/1‑149 (MQ=255)
aaTTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGCCACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGc > 1:992845/1‑149 (MQ=255)
aaTTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGc > 1:725039/1‑149 (MQ=255)
tGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTAt < 2:245328/149‑1 (MQ=255)
aTTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAACCGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATcc < 2:398460/149‑1 (MQ=255)
tGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCggg < 1:528374/149‑1 (MQ=255)
gCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGAGTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACg > 1:660815/1‑149 (MQ=255)
aGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGCCTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGTGCGATCCGGGCCACggg > 2:855908/1‑149 (MQ=25)
gAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACgggg > 2:217090/1‑149 (MQ=255)
agCTTAAATCGTGGCGTCCTGACACGAAAAACGGACCGCCGGGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAAGCAACGACACGGGGATTTTCAATCCCCTGATCTACCGACTGAGCTATCCGGGCAACGGGgcgc < 1:469203/148‑1 (MQ=21)
ctgaaatcgTGGCGTCCTGAAACGAAACACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGaaccaaggactcggggattttcaatcccctgctctaccgtctgcgctatccgggcaacggggcgcattaaacc < 1:52721‑M1/146‑74 (MQ=255)
ttAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGCGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCAtt < 1:629065/149‑1 (MQ=255)
aaTCGTGGCGTCCTGACACGAAAAACGGACCTCCGTGGAGGTCCGTTTATTTGAATTTGTTGCCCGGACTCGGAATCGATCCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCGATCCGGGCAACGGGGGGCAGTaaa > 2:577865/1‑149 (MQ=21)
aaTCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTaaa < 1:183367/149‑1 (MQ=255)
cTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACAAATGACACGGGGATTTTCAATCACCTGCTATACCGAAGGAGCTAACCGGGCACCGGGGCGCATTTAACCGAAATCTGca > 1:268621/1‑149 (MQ=21)
cTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTATATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGca < 2:2266/149‑1 (MQ=255)
tGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGCCTCGGAATCGAACCAAGGACACGGGGATATTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGcac < 1:343977/149‑1 (MQ=255)
gAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGcaca > 1:377320/1‑149 (MQ=255)
aCGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACAtct > 2:924360/1‑149 (MQ=255)
tataaaCGGACCTCCACGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAAGCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGCCTGAGCTAGCCGGGCAACGGGGCGCATTAATCCGTAATCTGCACATCTCg > 1:312000/4‑149 (MQ=21)
gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCGACCGACTGAGGTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCg > 2:859102/1‑149 (MQ=255)
gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGaaccaaggacacggggattttcaatcccctgctctaccgactgagctatccgggcaacggggcgcattaaaccgtaatctgcacatctcgtcaacc > 2:378999‑M1/1‑53 (MQ=255)
gAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCg > 2:910089/1‑149 (MQ=255)
ataaaCGGACCTCCACGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGt > 2:282845/3‑149 (MQ=255)
ataaaCGGACCTCCACGGAGGTCCGGTTATTTGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGCCGGAGCTATCCGGGCAGCGGGGCGCATTTCACAGTAAGCTGCACATCTCGt > 1:1003526/3‑149 (MQ=17)
aaaCGGACCTCCGTTGAGGTCCTTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTAGCGACTGAGATATCCGGGCTACGGGGCGCATTAATCCGTATTCTGCACATGTCGTCa > 2:765260/1‑149 (MQ=18)
gACCTCCACGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTa > 2:786711/1‑149 (MQ=255)
ccTCCGGGGATGTCCGTTTATATGAATGTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCGGCTCTACCGACTTAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAt < 2:630891/149‑1 (MQ=18)
cTCCGTGGAGGTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGCGATTTTCAAACCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAAACTGCACCTCTCGTCAACCTTAtt > 1:850763/1‑149 (MQ=21)
cTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAtt < 2:424988/149‑1 (MQ=255)
cTCCGTGGAGGTCCGTGTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAAtt < 1:199316/149‑1 (MQ=255)
gTCCGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAg > 2:739960/1‑149 (MQ=255)
gTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGGAATCTGCACATATCGTCAACCTAATTTCAGTAAAAg > 2:914709/1‑149 (MQ=255)
gTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACGGCGCTATCCGGGCAACGGGGCGCATTAAACCGTTATCTGCACATCTGGTCATCGTAATTTCAGTAAAAg > 2:829605/1‑149 (MQ=18)
cGTTTATATGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGTGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGa < 1:973841/149‑1 (MQ=255)
agatGAAATTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCAATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTAGTCAACCTAATTTCAGTAAAAGCGATTCaa > 1:328295/3‑149 (MQ=255)
atGAATTTGGTGCCCGGACTCGaaccaaggactcggggattttcaatcccctgctctaccgactgagctatccgggcaacggggcgcattaaaccgtaatctgcacatctcgtcaacctaatttcagtaaaagcgattcaactgcttaa < 1:378999‑M1/149‑128 (MQ=255)
tGAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGCCTGAGCTAGCCGGGCTACGGGGAGCATTAATCCGTGATCTGCACATGGCGTCACCCTAATTTCAGTAAAAGCGATTCAACTg > 1:309798/1‑149 (MQ=18)
gAATTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCAGTAAACCGTAATCTGCGCATCTCGTCAACCGAATTTCAGTAAAAGCGATTCAACTgg > 1:389702/1‑148 (MQ=255)
aaTTTGTTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCt > 1:357658/1‑149 (MQ=255)
aaTTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCt > 2:122361/1‑149 (MQ=255)
ttGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTaa < 2:71554/149‑1 (MQ=255)
ggTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGATCTACCGCCTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTATTTTCAGTAAAAGCGATTCAAGTggtgtagg > 2:187293/1‑142 (MQ=18)
|
CGAATTGGGATATGCCCGCAAATTGCTGGTGATGTGGGGAGAATCTGGTTGAGTTCGGTAGAATTGATTTGGAGGCAGAACGCTTAAATCGTGGCGTCCTGAAACGAAAAACGGACCTCCGTGGAGGTCCGTTTATATGAATTTGGTGCCCGGACTCGGAATCGAACCAAGGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTATCCGGGCAACGGGGCGCATTAAACCGTAATCTGCACATCTCGTCAACCTAATTTCAGTAAAAGCGATTCAACTGCTTAAGA > NC_000913/4362408‑4362700
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
