mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 165,038 | T→G | 10.8% | P103P (CCT→CCG) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 165,039 | G→C | 9.5% | A104P (GCG→CCG) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 184,253 | C→A | 12.9% | intergenic (‑158/+4) | yaeH ← / ← yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| RA | 222,958 | Δ1 bp | 100% | coding (126/576 nt) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 346,566 | C→T | 5.1% | A28V (GCG→GTG) | yahO → | periplasmic protein, function unknown, YhcN family |
| RA | 362,252 | T→A | 8.4% | T310S (ACC→TCC) | lacY ← | lactose permease |
| RA | 373,332 | C→G | 6.4% | P138A (CCA→GCA) | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| RA | 475,971 | C→G | 5.0% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 5.0% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 557,288 | G→A | 7.6% | R152C (CGT→TGT) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 744,457 | T→A | 7.2% | L72Q (CTG→CAG) | ybgK → | putative allophanate hydrolase, subunit 2 |
| RA | 744,507 | G→A | 6.8% | G89S (GGC→AGC) | ybgK → | putative allophanate hydrolase, subunit 2 |
| RA | 750,624 | C→T | 7.5% | A516T (GCA→ACA) | ybgQ ← | putative outer membrane protein |
| RA | 789,991 | C→T | 7.4% | G347R (GGA→AGA) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 933,993 | C→T | 6.6% | P257L (CCG→CTG) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 1,030,449 | A→G | 8.7% | F74L (TTT→CTT) | tusE ← | mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 1,075,518 | A→C | 8.9% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,211,612 | A→T | 5.2% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,220,920 | C→T | 5.6% | pseudogene (1320/2574 nt) | ycgH → | pseudogene; putative ATP‑binding component of a transport system |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,661,884 | T→C | 9.6% | H443H (CAT→CAC) | ynfF → | S‑ and N‑oxide reductase, A subunit, periplasmic |
| RA | 1,674,955 | A→T | 11.5% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,674,958 | A→T | 10.5% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,842,780 | G→A | 9.1% | G137E (GGA→GAA) | gdhA → | glutamate dehydrogenase, NADP‑specific |
| RA | 1,896,465 | G→A | 8.5% | G99D (GGC→GAC) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| RA | 1,896,468 | T→G | 8.2% | V100G (GTG→GGG) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| RA | 1,896,471 | T→G | 8.2% | L101R (CTG→CGG) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| RA | 1,896,474 | C→A | 9.1% | P102Q (CCG→CAG) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| RA | 1,896,480 | T→C | 8.2% | V104A (GTC→GCC) | nudL → | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,022,335 | C→T | 9.0% | T156I (ACC→ATC) | fliP → | flagellar biosynthesis protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,357,653 | A→G | 9.5% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| RA | 2,357,665 | G→A | 12.3% | G254G (GGG→GGA) | yfaD → | transposase_31 family protein |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,715,721 | T→A | 9.5% | L100H (CTT→CAT) | eamB → | cysteine and O‑acetylserine exporter |
| RA | 2,731,580 | C→T | 8.8% | intergenic (‑423/+20) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,581 | G→T | 8.5% | intergenic (‑424/+19) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,582 | A→C | 8.8% | intergenic (‑425/+18) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,731,583 | A→G | 8.8% | intergenic (‑426/+17) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,770,319 | C→G | 7.4% | P206R (CCG→CGG) | yfjR → | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,818,046 | A→G | 8.7% | intergenic (‑186/+13) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,818,049 | T→A | 10.7% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,904,212 | G→A | 100% | intergenic (+838/+535) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 2,939,333 | G→C | 6.8% | intergenic (+23/‑35) | fucU → / → fucR | L‑fucose mutarotase/l‑fucose operon activator |
| RA | 3,079,615 | C→T | 6.0% | intergenic (‑285/+29) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,617 | A→C | 6.4% | intergenic (‑287/+27) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,618 | A→G | 5.8% | intergenic (‑288/+26) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,095,711 | C→T | 6.3% | S205L (TCG→TTG) | yggS → | UPF0001 family protein, PLP‑binding |
| RA | 3,112,175 | A→G | 7.3% | pseudogene (767/849 nt) | yghF ← | pseudogene, secretion pathway protein, C‑type protein homology;putative transport; Not classified; putative general secretion pathway for protein export (GSP) |
| RA | 3,256,441 | T→G | 8.8% | T71P (ACG→CCG) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,442 | G→C | 7.0% | G70G (GGC→GGG) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,269,956 | T→C | 20.8% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,364,244 | T→C | 5.5% | Y480H (TAC→CAC) | yhcD → | putative outer membrane fimbrial subunit usher protein |
| RA | 3,406,717 | C→T | 7.1% | I267I (ATC→ATT) | accC → | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| RA | 3,437,908 | T→A | 6.4% | intergenic (+14/‑116) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,909 | A→T | 6.3% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,910 | A→T | 7.0% | intergenic (+16/‑114) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 7.1% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,635,236 | G→A | 6.1% | L132L (CTG→CTA) | yhiM → | acid resistance protein, inner membrane |
| RA | 3,708,595 | G→A | 5.6% | intergenic (‑890/+21) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,596 | T→A | 6.3% | intergenic (‑891/+20) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,597 | T→C | 5.8% | intergenic (‑892/+19) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,781,101 | A→C | 18.6% | intergenic (+84/‑114) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,781,108 | A→C | 12.0% | intergenic (+91/‑107) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,809,354 | A→G | 5.3% | E272G (GAA→GGA) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,809,356 | C→A | 6.2% | R273S (CGC→AGC) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,809,359 | T→G | 6.9% | F274V (TTC→GTC) ‡ | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,809,361 | C→T | 6.8% | F274F (TTC→TTT) ‡ | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,858,331 | T→A | 6.7% | K25I (AAA→ATA) | yidJ ← | sulfatase/phosphatase superfamily protein |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,916,815 | A→G | 8.1% | G187G (GGT→GGC) | atpD ← | F1 sector of membrane‑bound ATP synthase, beta subunit |
| RA | 3,953,432 | C→T | 7.7% | intergenic (+19/‑46) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,433 | A→G | 7.5% | intergenic (+20/‑45) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,436 | C→T | 6.2% | intergenic (+23/‑42) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,437 | A→G | 7.6% | intergenic (+24/‑41) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,993,436 | G→A | 6.3% | E762K (GAA→AAA) | cyaA → | adenylate cyclase |
| RA | 4,051,259 | G→T | 5.8% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 5.8% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,218,597 | T→C | 6.0% | M1T (ATG→ACG) † | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,219,424 | G→A | 6.4% | G277S (GGT→AGT) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,276,134 | C→T | 6.9% | R222C (CGC→TGC) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 4,296,060 | C→T | 29.8% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,299,056 | T→C | 7.0% | Q104R (CAG→CGG) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,309,402 | C→T | 6.4% | W23* (TGG→TAG) | alsC ← | D‑allose ABC transporter permease |
| RA | 4,362,553 | G→T | 54.1% | noncoding (74/76 nt) | pheU ← | tRNA‑Phe |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,436,919 | G→A | 5.5% | L55L (CTG→CTA) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,519,313 | C→A | 8.2% | intergenic (+89/+25) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,532,534 | G→C | 5.4% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 5.3% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,633,785 | C→A | 21.9% | intergenic (‑40/‑12) | yjjX ← / → ytjC | non‑canonical purine NTP phosphatase, ITPase/XTPase/phosphatase |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 773006 | 774207 | 1202 | 17 [16] | [16] 17 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037724 | 1039316 | 1593 | 18 [16] | [16] 17 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 1166069 | 1167386 | 1318 | 17 [14] | [16] 17 | [ndh] | [ndh] |
| * | * | ÷ | NC_000913 | 2947435–2947440 | 2947620 | 181–186 | 17 [16] | [16] 18 | [metZ]–[metV] | [metZ],metW,[metV] |
| * | * | ÷ | NC_000913 | 3423748–3424234 | 3424582–3424238 | 5–835 | 17 [16] | [16] 17 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 70646 = | 50 (0.840) | 4 (0.070) | 4/268 | NT | 7.8% | coding (260/879 nt) | araC | ara regulon transcriptional activator; autorepressor |
| ? | NC_000913 | 70694 = | 46 (0.800) | coding (308/879 nt) | araC | ara regulon transcriptional activator; autorepressor | |||||
| * | ? | NC_000913 | = 74103 | 61 (1.030) | 3 (0.050) | 3/266 | NT | 5.1% | coding (419/1611 nt) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| ? | NC_000913 | = 74120 | 52 (0.910) | coding (402/1611 nt) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease | |||||
| * | ? | NC_000913 | = 105336 | 56 (0.940) | 4 (0.070) | 3/266 | NT | 6.7% | coding (32/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| ? | NC_000913 | = 105353 | 57 (1.000) | coding (49/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein | |||||
| * | ? | NC_000913 | 126821 = | 48 (0.810) | 3 (0.050) | 3/262 | NT | 6.2% | coding (1127/1893 nt) | aceF | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| ? | NC_000913 | 126859 = | 46 (0.820) | coding (1165/1893 nt) | aceF | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 | |||||
| * | ? | NC_000913 | 208349 = | 53 (0.890) | 3 (0.050) | 3/262 | NT | 5.8% | coding (3224/3483 nt) | dnaE | DNA polymerase III alpha subunit |
| ? | NC_000913 | 208378 = | 48 (0.850) | coding (3253/3483 nt) | dnaE | DNA polymerase III alpha subunit | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 3 (0.050) | 3/262 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 6 (0.110) | 4/256 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 346823 | NA (NA) | 3 (0.050) | 3/266 | NT | NA | intergenic (+64/+34) | yahO/prpR | periplasmic protein, function unknown, YhcN family/propionate catabolism operon regulatory protein |
| ? | NC_000913 | = 346853 | NA (NA) | noncoding (30/30 nt) | REP24 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP24 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 4 (0.070) | 3/262 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 654979 | 44 (0.740) | 3 (0.050) | 3/268 | NT | 6.2% | coding (990/1386 nt) | dcuC | anaerobic C4‑dicarboxylate transport |
| ? | NC_000913 | = 655010 | 48 (0.830) | coding (959/1386 nt) | dcuC | anaerobic C4‑dicarboxylate transport | |||||
| * | ? | NC_000913 | = 665394 | 45 (0.760) | 3 (0.050) | 3/258 | NT | 6.4% | coding (920/1113 nt) | mrdB | cell wall shape‑determining protein |
| ? | NC_000913 | = 665423 | 46 (0.830) | coding (891/1113 nt) | mrdB | cell wall shape‑determining protein | |||||
| * | ? | NC_000913 | 1100121 = | 44 (0.740) | 3 (0.050) | 3/268 | NT | 6.8% | coding (482/555 nt) | ycdY | redox enzyme maturation protein (REMP) chaperone for YcdX |
| ? | NC_000913 | 1100158 = | 39 (0.680) | coding (519/555 nt) | ycdY | redox enzyme maturation protein (REMP) chaperone for YcdX | |||||
| * | ? | NC_000913 | = 1186372 | 57 (0.960) | 3 (0.050) | 3/266 | NT | 5.3% | coding (529/1227 nt) | pepT | peptidase T |
| ? | NC_000913 | = 1186406 | 53 (0.930) | coding (563/1227 nt) | pepT | peptidase T | |||||
| * | ? | NC_000913 | 1207790 = | 19 (0.320) | 33 (0.630) | 28/244 | NT | 66.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 17 (0.320) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 18 (0.300) | 20 (0.380) | 17/244 | NT | 54.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 17 (0.320) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1789000 = | 50 (0.840) | 3 (0.050) | 3/266 | NT | 5.6% | coding (566/1047 nt) | aroH | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| ? | NC_000913 | 1789053 = | 53 (0.930) | coding (619/1047 nt) | aroH | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible | |||||
| * | ? | NC_000913 | 2019533 = | 36 (0.610) | 3 (0.050) | 3/268 | NT | 7.7% | intergenic (+20/‑85) | fliK/fliL | flagellar hook‑length control protein/flagellar biosynthesis protein |
| ? | NC_000913 | 2019576 = | 37 (0.640) | intergenic (+63/‑42) | fliK/fliL | flagellar hook‑length control protein/flagellar biosynthesis protein | |||||
| * | ? | NC_000913 | 2051805 = | 46 (0.770) | 3 (0.050) | 3/262 | NT | 7.0% | coding (6868/7077 nt) | yeeJ | putative adhesin |
| ? | NC_000913 | 2051842 = | 36 (0.640) | coding (6905/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | NC_000913 | 2054966 = | 60 (1.010) | 3 (0.050) | 3/256 | NT | 5.2% | intergenic (+7/‑95) | shiA/amn | shikimate transporter/AMP nucleosidase |
| ? | NC_000913 | 2054990 = | 53 (0.960) | intergenic (+31/‑71) | shiA/amn | shikimate transporter/AMP nucleosidase | |||||
| * | ? | NC_000913 | 2358939 = | 56 (0.940) | 4 (0.070) | 4/268 | NT | 6.9% | coding (1214/1290 nt) | rhmT | putative L‑rhamnonate transporter |
| ? | NC_000913 | 2358980 = | 53 (0.920) | coding (1173/1290 nt) | rhmT | putative L‑rhamnonate transporter | |||||
| * | ? | NC_000913 | 2448302 = | 38 (0.640) | 3 (0.050) | 3/264 | NT | 8.5% | coding (139/933 nt) | prmB | N5‑glutamine methyltransferase |
| ? | NC_000913 | 2448343 = | 28 (0.490) | coding (98/933 nt) | prmB | N5‑glutamine methyltransferase | |||||
| * | ? | NC_000913 | 2594968 = | 57 (0.960) | 4 (0.070) | 3/264 | NT | 7.3% | coding (892/2016 nt) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase |
| ? | NC_000913 | 2595009 = | 47 (0.830) | coding (851/2016 nt) | tmcA | elongator methionine tRNA (ac4C34) acetyltransferase | |||||
| * | ? | NC_000913 | = 2714956 | 60 (1.010) | 4 (0.070) | 4/264 | NT | 6.2% | coding (365/882 nt) | yfiE | putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 2714976 | 63 (1.110) | coding (345/882 nt) | yfiE | putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 2806786 = | 41 (0.690) | 3 (0.050) | 3/262 | NT | 7.5% | coding (777/1065 nt) | proW | glycine betaine/proline ABC transporter permease |
| ? | NC_000913 | 2806856 = | 35 (0.620) | coding (847/1065 nt) | proW | glycine betaine/proline ABC transporter permease | |||||
| * | ? | NC_000913 | 3125558 = | 60 (1.010) | 3 (0.050) | 3/268 | NT | 5.2% | coding (965/1053 nt) | glcE | glycolate oxidase FAD binding subunit |
| ? | NC_000913 | 3125590 = | 51 (0.880) | coding (933/1053 nt) | glcE | glycolate oxidase FAD binding subunit | |||||
| * | ? | NC_000913 | = 3246883 | 32 (0.540) | 3 (0.050) | 3/262 | NT | 8.8% | coding (232/777 nt) | exuR | hexuronate regulon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 3246894 | 32 (0.570) | coding (243/777 nt) | exuR | hexuronate regulon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | 3426897 = | NA (NA) | 3 (0.050) | 3/266 | NT | NA | intergenic (‑114/+61) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913 | 3426933 = | NA (NA) | intergenic (‑150/+25) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913 | 3628526 = | 60 (1.010) | 3 (0.050) | 3/264 | NT | 5.1% | coding (1013/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| ? | NC_000913 | 3628563 = | 55 (0.970) | coding (976/2736 nt) | rbbA | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein | |||||
| * | ? | NC_000913 | = 3943700 | 18 (0.300) | 3 (0.050) | 3/268 | NT | 14.7% | intergenic (+190/‑4) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037477 | NA (NA) | intergenic (+142/‑42) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3943700 | 18 (0.300) | 3 (0.050) | 3/268 | NT | 6.6% | intergenic (+190/‑4) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4168599 | 67 (1.160) | intergenic (+152/‑42) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 3973637 = | 56 (0.940) | 3 (0.050) | 3/266 | NT | 5.1% | coding (30/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase |
| ? | NC_000913 | 3973689 = | 58 (1.010) | coding (82/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase | |||||
| * | ? | NC_000913 | = 4008067 | 48 (0.810) | 3 (0.050) | 3/262 | NT | 5.7% | coding (311/621 nt) | rhtC | threonine efflux pump |
| ? | NC_000913 | = 4008090 | 54 (0.960) | coding (334/621 nt) | rhtC | threonine efflux pump | |||||
| * | ? | NC_000913 | 4009087 = | 65 (1.090) | 4 (0.070) | 4/272 | NT | 5.7% | intergenic (‑28/‑83) | rhtB/pldB | homoserine, homoserine lactone and S‑methyl‑methionine efflux pump/lysophospholipase L2 |
| ? | NC_000913 | 4009121 = | 68 (1.160) | intergenic (‑62/‑49) | rhtB/pldB | homoserine, homoserine lactone and S‑methyl‑methionine efflux pump/lysophospholipase L2 | |||||
| * | ? | NC_000913 | = 4123819 | 55 (0.930) | 4 (0.070) | 4/262 | NT | 6.9% | coding (638/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| ? | NC_000913 | = 4123864 | 56 (0.990) | coding (593/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon | |||||
| * | ? | NC_000913 | = 4124311 | 68 (1.150) | 5 (0.090) | 3/268 | NT | 7.6% | coding (146/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon |
| ? | NC_000913 | = 4124344 | 56 (0.970) | coding (113/1026 nt) | cytR | Anti‑activator for CytR‑CRP nucleoside utilization regulon | |||||
| * | ? | NC_000913 | = 4168341 | 36 (0.610) | 3 (0.050) | 3/256 | NT | 8.1% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 35 (0.640) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 4317083 = | 56 (0.940) | 4 (0.070) | 4/260 | NT | 7.2% | coding (136/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | NC_000913 | 4317120 = | 51 (0.910) | coding (99/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | NC_000913 | = 4583137 | 79 (1.330) | 4 (0.070) | 4/264 | NT | 5.4% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 65 (1.140) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||