Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F53 I19 R3 125 83.6 3029080 95.4% 2889742 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,724,200 T→C A209A (GCA→GCG)  U712_19200 ← SacPA operon antiterminator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,724,2000TC100.0% 460.3 / NA 124A209A (GCA→GCG) U712_19200SacPA operon antiterminator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (62/62);  total (62/62)

Only 100 of 134 total aligned reads displayed.

TAATTGATATTCACTTTTCAAAAACTCTGCCAGCTCAAGCGCACATTGATAGGCAAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGACTGACTGCGTATCTCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTCTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTC  >  CP006881/3724065‑3724332
                                                                                                                                       |                                                                                                                                     
tAATTGATATTCATTTTTCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACcgcg                                                                                                                                    <  7:296009/139‑1 (MQ=255)
tAATTGATATTCATTTTTCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACcgcg                                                                                                                                    <  8:26878/139‑1 (MQ=255)
       tactCATTTTTCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATACAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTAtcgc                                                                                                                              <  1:345330/135‑3 (MQ=255)
        atTCATTTTTCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCa                                                                                                                             >  7:164238/1‑138 (MQ=255)
           catttttCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAAt                                                                                                                          <  4:112729/135‑1 (MQ=255)
                 tCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGa                                                                                                                    >  3:270527/1‑138 (MQ=255)
                    aaaaCTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAg                                                                                                                <  6:152708/139‑1 (MQ=255)
                            gCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGAt                                                                                                        <  7:45354/139‑1 (MQ=255)
                                       cgcACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTg                                                                                             <  1:304182/139‑1 (MQ=255)
                                         cacaTTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGtt                                                                                           <  6:200664/139‑1 (MQ=255)
                                           caTTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACcgcg                                                                                                                                    <  1:359705/96‑1 (MQ=255)
                                            aTTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGtttt                                                                                         >  3:67240/1‑138 (MQ=255)
                                            aTTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGtttt                                                                                         >  7:60412/1‑138 (MQ=255)
                                            aTTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGtttt                                                                                         >  7:219468/1‑138 (MQ=255)
                                              tGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCAt                                                                                      >  5:14246/1‑139 (MQ=255)
                                                aTAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATc                                                                                     <  6:122324/138‑1 (MQ=255)
                                                   ggCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGAt                                                                                                        >  5:125464/1‑116 (MQ=255)
                                                      gaaTGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCttt                                                                              >  3:104772/2‑139 (MQ=255)
                                                      gaaTGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCtt                                                                               >  6:200225/2‑138 (MQ=255)
                                                       aaTGAATATTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTc                                                                             >  2:363967/1‑139 (MQ=255)
                                                         tGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGa                                                                           <  7:262821/139‑1 (MQ=255)
                                                                  tttttGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACcgcg                                                                                                                                    >  3:85484/1‑73 (MQ=255)
                                                                  tttttGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa                                                                   <  7:8748/138‑1 (MQ=255)
                                                                          tGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAt                                                         <  1:85064/139‑1 (MQ=255)
                                                                            aaaTAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt                                                        <  8:164238/138‑1 (MQ=255)
                                                                               tAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTtct                                                    <  1:34721/139‑1 (MQ=255)
                                                                                     aTCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTTACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTATCGATTAAAGTATTG‑TTTTATTTTCTCTATCa                                              <  5:313745/139‑1 (MQ=255)
                                                                                      tctcCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAt                                             >  3:125884/1‑139 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGCCAAGGCGTTGATAGGAAATGCTGTTGTCATCCACATTTCGATTAAAGTATTG‑TTTTATTTTCTCGAtattt                                            >  7:324940/1‑135 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg                                                                                                >  7:204062/1‑88 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg                                                                                                <  8:204062/88‑1 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg                                                                                                <  6:159021/88‑1 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg                                                                                                >  5:159021/1‑88 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCtt                                                                               <  8:160232/105‑1 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                            >  7:70947/1‑139 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt                                            >  8:218733/1‑139 (MQ=255)
                                                                                       ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTAGTG‑TTTTATTTTCTCTATCAtt                                            >  4:345278/1‑139 (MQ=255)
                                                                                               ccATACGATGGAGCGCTGCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGAt                                    <  2:20815/139‑1 (MQ=255)
                                                                                                 aTACGATGGATCGCTTCAATTGATTCCAACCGGCTGACCGCGTATCGGAAATGCGTGACAAGGCGGTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  8:60412/139‑1 (MQ=255)
                                                                                                 aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  8:219468/139‑1 (MQ=255)
                                                                                                 aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  4:249855/139‑1 (MQ=255)
                                                                                                 aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  1:202024/139‑1 (MQ=255)
                                                                                                 aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  2:128785/139‑1 (MQ=255)
                                                                                                 aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  1:93854/139‑1 (MQ=255)
                                                                                                  tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt                                                        >  3:242440/1‑116 (MQ=255)
                                                                                                  tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt                                         <  8:41014/131‑1 (MQ=255)
                                                                                                  tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt                                         >  7:41014/1‑131 (MQ=255)
                                                                                                  tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCAt                                 >  1:66229/1‑139 (MQ=255)
                                                                                                  tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCAt                                 >  1:3451/1‑139 (MQ=255)
                                                                                                   aCGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGAt                                                                          <  3:197889/98‑1 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCGAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg                                                                                                <  1:213538/72‑1 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGATATg                                                                                                >  2:213538/1‑72 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  2:217567/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  6:280870/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  8:270724/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  8:362020/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  4:131974/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  3:187901/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg                            >  2:48576/1‑139 (MQ=255)
                                                                                                       tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCCTATCGCAAAAGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGAATAAAGAATTG‑TATTATTTTCTCTAACAATTCTTTTATAAtcgac                             >  4:61027/1‑134 (MQ=255)
                                                                                                         gatctcTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCAACTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                          <  4:164784/134‑1 (MQ=255)
                                                                                                         gAGCGCTTCATTTGATTCCTACCGGCTGACCGCGTATCGATAATGCTTGACAAGGCGTTGATAGGTAATGCTGTTTTCATCCACCTTTCGATTATAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                          <  3:61027/139‑1 (MQ=255)
                                                                                                         gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                          <  3:131974/139‑1 (MQ=255)
                                                                                                         gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                          <  4:23829/139‑1 (MQ=255)
                                                                                                         gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa                          <  2:72889/139‑1 (MQ=255)
                                                                                                            cgcTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa                                                                   >  4:144667/1‑96 (MQ=255)
                                                                                                            cgcTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa                                                                   <  3:144667/96‑1 (MQ=255)
                                                                                                              cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTc                                                                             >  2:324548/1‑84 (MQ=255)
                                                                                                              cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt                     <  3:39126/139‑1 (MQ=255)
                                                                                                              cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt                     <  4:104772/139‑1 (MQ=255)
                                                                                                              cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCt                      >  4:216193/1‑138 (MQ=255)
                                                                                                               ttCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt                     >  7:39137/1‑138 (MQ=255)
                                                                                                                 cATATGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  <  8:17771/123‑1 (MQ=255)
                                                                                                                 cATATGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa                                  >  7:17771/1‑123 (MQ=255)
                                                                                                                   tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                <  2:3451/139‑1 (MQ=255)
                                                                                                                   tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                <  7:137477/139‑1 (MQ=255)
                                                                                                                   tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                <  7:200246/139‑1 (MQ=255)
                                                                                                                   tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                <  2:77377/139‑1 (MQ=255)
                                                                                                                     tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTGTTTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg                <  5:200225/138‑1 (MQ=255)
                                                                                                                     tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc               <  2:66229/138‑1 (MQ=255)
                                                                                                                     tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc               <  1:153002/138‑1 (MQ=255)
                                                                                                                       aTTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTg             <  6:61700/138‑1 (MQ=255)
                                                                                                                        ttCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa           <  1:69797/139‑1 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa                                                                   >  2:319995/1‑83 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa                                                                   <  1:319995/83‑1 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTTTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa           >  7:204762/1‑138 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc               >  5:218644/1‑134 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc               <  6:218644/134‑1 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa           >  4:344625/1‑138 (MQ=255)
                                                                                                                         tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTATATAATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa           >  7:158924/1‑138 (MQ=255)
                                                                                                                          ccAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAAt          <  6:14246/138‑1 (MQ=255)
                                                                                                                            aaCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCg                                                                                                             >  3:227226/1‑38 (MQ=255)
                                                                                                                            aaCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCg                                                                                                             <  4:227226/38‑1 (MQ=255)
                                                                                                                            aaCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACa       <  5:268202/139‑1 (MQ=255)
                                                                                                                             aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt                                         <  7:141265/104‑1 (MQ=255)
                                                                                                                             aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc               >  5:358206/1‑130 (MQ=255)
                                                                                                                             aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc               <  6:358206/130‑1 (MQ=255)
                                                                                                                             aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACAt      >  4:293033/1‑139 (MQ=255)
                                                                                                                              ccggcagaccgCGGATCACAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATg     <  3:6394/133‑1 (MQ=255)
                                                                                                                                 gctgaccgCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGctc  >  1:271054/2‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                     
TAATTGATATTCACTTTTCAAAAACTCTGCCAGCTCAAGCGCACATTGATAGGCAAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGACTGACTGCGTATCTCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTCTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTC  >  CP006881/3724065‑3724332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A