Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F53 I19 R3
|
125 |
83.6 |
3029080 |
95.4% |
2889742 |
127.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,724,208 |
T→G |
R207R (AGA→CGA) |
U712_19200 ← |
SacPA operon antiterminator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,724,208 | 0 | T | G | 99.2%
| 472.2
/ ‑4.8
| 129 | R207R (AGA→CGA) | U712_19200 | SacPA operon antiterminator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (65/63); minor base A (0/1); total (65/64) |
| Fisher's exact test for biased strand distribution p-value = 4.96e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.37e-01 |
Only 100 of 129 total aligned reads displayed.
ATTCACTTTTCAAAAACTCTGCCAGCTCAAGCGCACATTGATAGGCAAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGACTGACTGCGTATCTCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTCTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCC > CP006881/3724073‑3724341
|
atTCATTTTTCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCa > 7:164238/1‑138 (MQ=255)
catttttCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAAt < 4:112729/135‑1 (MQ=255)
tCAAAAACTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGa > 3:270527/1‑138 (MQ=255)
aaaaCTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAg < 6:152708/139‑1 (MQ=255)
aaaCTCCGCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAgg > 7:201030/1‑139 (MQ=255)
gCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGAt < 3:40371/139‑1 (MQ=255)
gCCAGCTCCAGCGCACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGAt < 7:45354/139‑1 (MQ=255)
cgcACATTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTg < 1:304182/139‑1 (MQ=255)
cacaTTGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGtt < 6:200664/139‑1 (MQ=255)
tGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCAt > 5:14246/1‑139 (MQ=255)
tGATAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCAt > 1:265699/1‑139 (MQ=255)
aTAGGCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATc < 6:122324/138‑1 (MQ=255)
ggCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGAt > 5:125464/1‑116 (MQ=255)
ggCGAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGAt < 6:125464/116‑1 (MQ=255)
gaaTGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCttt > 3:104772/2‑139 (MQ=255)
tGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGa < 7:262821/139‑1 (MQ=255)
tttttGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa < 7:8748/138‑1 (MQ=255)
tGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAt < 1:85064/139‑1 (MQ=255)
aaaTAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt < 8:164238/138‑1 (MQ=255)
tAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTtct < 1:34721/139‑1 (MQ=255)
aGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTa > 4:128930/1‑139 (MQ=255)
aTCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTTACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTATCGATTAAAGTATTG‑TTTTATTTTCTCTATCa < 5:313745/139‑1 (MQ=255)
tctcCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAt > 3:125884/1‑139 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGCCAAGGCGTTGATAGGAAATGCTGTTGTCATCCACATTTCGATTAAAGTATTG‑TTTTATTTTCTCGAtattt > 7:324940/1‑135 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg < 6:159021/88‑1 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg > 7:204062/1‑88 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg < 8:204062/88‑1 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg > 5:159021/1‑88 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCtt > 7:160232/1‑105 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt > 3:71899/1‑139 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt > 7:58875/1‑139 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt > 7:70947/1‑139 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCAtt > 8:24353/1‑139 (MQ=255)
ctcctcGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTAGTG‑TTTTATTTTCTCTATCAtt > 4:345278/1‑139 (MQ=255)
ccATACGATGGAGCGCTGCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGAt < 2:20815/139‑1 (MQ=255)
aTACGATGGATCGCTTCAATTGATTCCAACCGGCTGACCGCGTATCGGAAATGCGTGACAAGGCGGTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 8:60412/139‑1 (MQ=255)
aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 4:249855/139‑1 (MQ=255)
aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 8:219468/139‑1 (MQ=255)
aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 1:202024/139‑1 (MQ=255)
aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 1:93854/139‑1 (MQ=255)
aTACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 2:128785/139‑1 (MQ=255)
tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt < 4:242440/116‑1 (MQ=255)
tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTAtt > 3:242440/1‑116 (MQ=255)
tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt > 7:41014/1‑131 (MQ=255)
tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt < 8:41014/131‑1 (MQ=255)
tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCAt > 1:66229/1‑139 (MQ=255)
tACGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTATCTATCATTTCTTTGATCAt > 7:219925/1‑139 (MQ=255)
aCGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGAt > 4:197889/1‑98 (MQ=255)
aCGATGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGAt < 3:197889/98‑1 (MQ=255)
tGGAGCGCTTCATTTGATTCGAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATg < 1:213538/72‑1 (MQ=255)
tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGATATg > 2:213538/1‑72 (MQ=255)
tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg > 2:48576/1‑139 (MQ=255)
tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg > 8:270724/1‑139 (MQ=255)
tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg > 2:217567/1‑139 (MQ=255)
tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg > 3:187901/1‑139 (MQ=255)
tGGAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg > 3:23829/1‑139 (MQ=255)
tGGAGCGCTTCATTTGATACCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCg > 3:176836/1‑139 (MQ=255)
gatctcTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCAACTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa < 4:164784/134‑1 (MQ=255)
gAGCGCTTCATTTGATTCCTACCGGCTGACCGCGTATCGATAATGCTTGACAAGGCGTTGATAGGTAATGCTGTTTTCATCCACCTTTCGATTATAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa < 3:61027/139‑1 (MQ=255)
gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa < 4:23829/139‑1 (MQ=255)
gAGCGCTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTa < 8:201030/139‑1 (MQ=255)
cgcTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa < 3:144667/96‑1 (MQ=255)
cgcTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa > 4:144667/1‑96 (MQ=255)
cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTc > 2:324548/1‑84 (MQ=255)
cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTc < 1:324548/84‑1 (MQ=255)
cTTCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt < 4:104772/139‑1 (MQ=255)
ttCATTTGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCtt > 7:39137/1‑138 (MQ=255)
cATATGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCa < 8:17771/123‑1 (MQ=255)
tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg > 4:329606/1‑139 (MQ=255)
tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg < 2:77377/139‑1 (MQ=255)
tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg < 6:95920/139‑1 (MQ=255)
tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg < 7:137477/139‑1 (MQ=255)
tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg < 7:200246/139‑1 (MQ=255)
tttGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg < 2:3451/139‑1 (MQ=255)
tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTGTTTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcg < 5:200225/138‑1 (MQ=255)
tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc < 2:66229/138‑1 (MQ=255)
tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc < 6:248366/138‑1 (MQ=255)
tGATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc < 1:153002/138‑1 (MQ=255)
gATTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTATCTATCATTTATTTTATCATGGTCGTATGCTTAATCGCTg > 2:69797/1‑139 (MQ=255)
aTTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTg < 6:61700/138‑1 (MQ=255)
aTTCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTg < 8:39137/138‑1 (MQ=255)
ttCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa < 1:69797/139‑1 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTa < 1:319995/83‑1 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTTTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa > 7:204762/1‑138 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc > 5:218644/1‑134 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc < 6:218644/134‑1 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa > 4:344625/1‑138 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa > 6:170414/1‑138 (MQ=255)
tCCAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTATATAATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGaa > 7:158924/1‑138 (MQ=255)
ccAACCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAAt < 2:265699/138‑1 (MQ=255)
aaCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCg < 4:227226/38‑1 (MQ=255)
aaCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACa < 5:268202/139‑1 (MQ=255)
aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCt > 8:141265/1‑104 (MQ=255)
aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc < 6:358206/130‑1 (MQ=255)
aCCGGCTGACCGCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAgcgc > 5:358206/1‑130 (MQ=255)
ccggcagaccgCGGATCACAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATg < 3:6394/133‑1 (MQ=255)
accgCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCg < 4:77691/136‑1 (MQ=255)
cgCGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGca < 1:363967/138‑1 (MQ=255)
cGTATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAATTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGTTCGTATGGTTCAGCGCTGAATACATGATCAACGcaaa > 2:377257/1‑137 (MQ=255)
tATCGCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTTTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGcatcc > 2:354882/1‑138 (MQ=255)
|
ATTCACTTTTCAAAAACTCTGCCAGCTCAAGCGCACATTGATAGGCAAATGAATACTTTTTTTGGATGAAATAAAGCATCTCCTCGTCCATACGATGGAGCGCTTCATTTGATTCCAACCGACTGACTGCGTATCTCAAATGCGTGACAAGGCGTTGATAGGAAATGCTGTTTTCATCCACCTTTCGATTAAAGTATTG‑TTCTATTTTCTCTATCATTTCTTTGATCATGGTCGTATGCTTCAGCGCTGAATACATGCTCTCCGCATCC > CP006881/3724073‑3724341
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
