Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F53 I19 R3	125	83.6	3029080	95.4%	2889742	127.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,724,719	G→A	D36D (GAC→GAT)	U712_19200 ←	SacPA operon antiterminator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,724,719	0	G	A	100.0%	232.4 / NA	73	D36D (GAC→GAT)	U712_19200	SacPA operon antiterminator
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/36); total (37/36)

CCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCAATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTAAACTTTTCATTCTCGTCGTGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGGTCATTTTTCTTTTTTTGAAAAGCGATTCCTGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAGTACTTTATAGATTTTCAAGAGGCTATCTCTCCCGCCAATTAGCTT  >  CP006881/3724587‑3724853

tccTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCAC‑TTAATCATAGGGATGAGATCAtttt                                                                                                                                 >  1:369844/2‑139 (MQ=255)

          tAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCttttttt                                                                                                                        >  8:294449/1‑139 (MQ=255)

          tAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCttttttt                                                                                                                        >  8:337761/1‑139 (MQ=255)

             cTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGaa                                                                                                                     <  7:178822/139‑1 (MQ=255)

             cTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGaa                                                                                                                     <  8:235273/139‑1 (MQ=255)

                 tgatATACTCATCTTTTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACATAGATCTTTTCCACTTTATTCATAGGGATGATATCATTTTTCTTTTTTTGAAAAGc                                                                                                                 <  7:12212/139‑1 (MQ=255)

                     atCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGAtt                                                                                                             >  2:362625/1‑139 (MQ=255)

                     atCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTAAAAAGCGAtt                                                                                                             >  2:255890/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTcc                                                                                                           >  7:31880/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTcc                                                                                                           >  7:298809/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTcc                                                                                                           >  7:116875/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTcc                                                                                                           >  4:98106/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTcc                                                                                                           >  2:372818/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCATTTTTTGAAAAGCGATTcc                                                                                                           >  7:34209/1‑139 (MQ=255)

                       ccTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTATCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTcc                                                                                                           >  5:176490/1‑139 (MQ=255)

                          cAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCgg                                                                                                        >  4:280533/1‑139 (MQ=255)

                                tttCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTGTTTTGAAAAGCGATTcc                                                                                                           <  2:75175/130‑1 (MQ=255)

                                tttCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTCTTTTGAAAAGCGATTcc                                                                                                           >  1:75175/1‑130 (MQ=255)

                                   ctatatGCTCCTCCGGCATTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTTAAAAGCGATTCCCGGTCCCATCa                                                                                                <  2:355949/136‑1 (MQ=255)

                                       atGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGAtt                                                                                           >  6:264222/1‑139 (MQ=255)

                                          ctcctcCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAATATCTATTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTTAAAAGCGATTCCCCGTCCAATCACGAttttt                                                                                        >  3:314691/1‑139 (MQ=255)

                                          ctcctcCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATc                                                                                                 >  6:115453/1‑130 (MQ=255)

                                          ctcctcCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATc                                                                                                 <  5:115453/130‑1 (MQ=255)

                                          ctcctcCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGAttttt                                                                                        >  2:207977/1‑139 (MQ=255)

                                           tcctccGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGAttttt                                                                                        >  4:11250/1‑138 (MQ=255)

                                             ctccGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCAAGATTTTTTcc                                                                                     >  5:9616/1‑139 (MQ=255)

                                             atccGGCAGTGTATGCAGGATTTGATTGAACTTTTCATTATCGTCGCGCACGACAAAGATCTTTTCCAATTTATTAATATGTATGAGATCATTTTTCTTTTTTTTAAAAGCGATTACCTGTCCCATCACGAttttttac                                                                                     >  3:233686/2‑137 (MQ=255)

                                                    aGTGTTTTCAGGATTTTTTTGAACTTTTCATTCTCGTGGCGCACGACAAAGATATTTTCCA‑ATTATTCAATGGTATGAGATCATTTTTATTTTTTTTAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcatc                                                                             <  2:369844/139‑1 (MQ=255)

                                                    aGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcat                                                                              <  4:248871/139‑1 (MQ=255)

                                                     gtgtTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcatc                                                                             <  3:315060/139‑1 (MQ=255)

                                                     gtgtTTGCAGGATTTGTTTGAACTATTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcatc                                                                             <  1:55894/139‑1 (MQ=255)

                                                     gtgtTTGCAGGATTAGTTTGAACGTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcatc                                                                             <  2:212701/139‑1 (MQ=255)

                                                       gtTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCa                                                                                                >  4:344079/1‑118 (MQ=255)

                                                       gtTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCa                                                                                                <  3:344079/118‑1 (MQ=255)

                                                       gtTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCct                                                                           >  3:89885/1‑139 (MQ=255)

                                                        tttGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGATATAATTTTTCTTTTTTTGaa                                                                                                                     <  4:201397/96‑1 (MQ=255)

                                                        tttGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGaa                                                                                                                     >  3:201397/1‑96 (MQ=255)

                                                          tGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCtt                                                                        >  5:97145/1‑139 (MQ=255)

                                                           gCAGGATTTGTTTGATCTTTTCATTCTCGTCGCGCATGAATAAGATCTTTTCCTGTTTATTCATAGGGATGATATCATTTTTATTTTTTTGAAAAGCGATTCCCGGTCCCATCAGGATTTTTTCCTGATCATCCTCtt                                                                        <  4:314691/138‑1 (MQ=255)

                                                                 tttgtttgAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTttatta                                                                  <  3:237234/138‑1 (MQ=255)

                                                                  ttGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTaa                                                                 <  3:290160/138‑1 (MQ=255)

                                                                  ttGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTATTTTTGAAAAGCTAATCCCTGTCCCAAAACGATTTATTCCTGCTCATCCTCTTttatta                                                                  >  4:359006/1‑137 (MQ=255)

                                                                       tgaaCTTTTCATTCTCGGCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCg                                                            <  6:280347/136‑1 (MQ=255)

                                                                         aaCTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTAAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCa                                                          <  1:255890/138‑1 (MQ=255)

                                                                         aaCTTTTCATCCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCAt                                                         >  8:322177/1‑139 (MQ=255)

                                                                           cTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTTATTGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCAttg                                                       <  6:176490/139‑1 (MQ=255)

                                                                           cTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCTGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCAttg                                                       <  5:120912/139‑1 (MQ=255)

                                                                           cTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCAttg                                                       <  7:337761/139‑1 (MQ=255)

                                                                           cTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCAttg                                                       <  4:89885/139‑1 (MQ=255)

                                                                           cTTTTCATTCACGGCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGACATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCAttg                                                       <  6:170370/139‑1 (MQ=255)

                                                                              ttCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcat                                                                              >  1:267129/1‑113 (MQ=255)

                                                                              ttCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGatcat                                                                              <  2:267129/113‑1 (MQ=255)

                                                                                  ttCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTa                                                <  4:338403/139‑1 (MQ=255)

                                                                                    ctcGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTaa                                               <  4:134474/138‑2 (MQ=255)

                                                                                    ctcGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTaa                                               <  3:98106/138‑2 (MQ=255)

                                                                                    ctcGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTaa                                               <  1:372818/138‑2 (MQ=255)

                                                                                    ctcGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTaa                                               <  6:232592/138‑2 (MQ=255)

                                                                                              aagACAAAGATAGTTTCCACTTTAATACTATGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTACCGGTACCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTTTTGTTTAATACTTtatata                                    <  7:336913/137‑3 (MQ=255)

                                                                                              aCGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGa                                    <  3:127329/139‑1 (MQ=255)

                                                                                                     aGATCTTTTCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCaa                             <  7:89656/139‑1 (MQ=255)

                                                                                                      gATCTTTGCCACTTTATTGATAGGGATTCGATCTTTTTTCGTTTTTTTAAAAGCGATTCAGGGTCGCATCACGATTTTTTCCTGATCATACTCTTTTCTTAAAGCCGAATTGTTGTTTAATAATTTATAGATTTTCAag                            <  5:273147/139‑1 (MQ=255)

                                                                                                          ttttCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGCTCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAggt                        >  5:67908/1‑138 (MQ=255)

                                                                                                            ttCCACTTTATTCATAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTa                      >  8:88806/1‑139 (MQ=255)

                                                                                                                      ttCATAGGGATGAGATGATTTTTCATTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTATCCTGATCATCCTCTTTTATTAAATCCGCAATGTTGTTTAATACTTTATAGATTTTCAAGAGGTTATCTCTCCCg             <  8:34209/138‑1 (MQ=255)

                                                                                                                          tAGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTATCTCTCCCGCCAAt        <  8:116875/139‑1 (MQ=255)

                                                                                                                           aGGGATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCTTAAAGATTATTTCATGATCATCCTCTATTATTAAAGCCGCATTCTTGTTTAATAATTTATAGATTTTCAAGAGGATATCTCTCACGCCAAtt       >  8:185675/1‑139 (MQ=255)

                                                                                                                              gATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCaa                             >  6:35497/1‑114 (MQ=255)

                                                                                                                              gATGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCaa                             <  5:35497/114‑1 (MQ=255)

                                                                                                                                tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTATCTCTCCCGCCAATTTGCtt  >  7:8838/1‑139 (MQ=255)

                                                                                                                                tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTATCTCTCCCGCCAATTTGCtt  >  7:280223/1‑139 (MQ=255)

                                                                                                                                tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTATCTCTCCCGCCAATTTGCtt  >  6:295167/1‑139 (MQ=255)

                                                                                                                                tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTCAAGAGGTTATCTCTCCCGCCAATTTGCtt  >  4:152365/1‑139 (MQ=255)

                                                                                                                                tGAGATCATTTTTCTTTTTTTGAAAAGCGATTCCCGGTCCCATCACGATTTTTTCCTGATATTCCTCTTTTATTAAAGCCGCATTGTTGTTTAATACTTTATAGATTTTAAAGAGGTTATCTCTCCCGCCAATTTGCtt  >  1:258553/1‑139 (MQ=255)

CCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCAATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTAAACTTTTCATTCTCGTCGTGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATGAGGTCATTTTTCTTTTTTTGAAAAGCGATTCCTGGTCCCATCACGATTTTTTCCTGATCATCCTCTTTTATTAAAGCCGCATTGTTGTTTAGTACTTTATAGATTTTCAAGAGGCTATCTCTCCCGCCAATTAGCTT  >  CP006881/3724587‑3724853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A