Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,173,849 A→C P359P (CCT→CCG)  U712_10875 ← CCA‑adding enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,173,8490AC100.0% 223.4 / NA 68P359P (CCT→CCG) U712_10875CCA‑adding enzyme
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (37/31);  total (37/31)

AATTCAATAAGGTCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTTCCTGTCACAACAGCCTGCTCGATCCGCTGTAATTCTTCCGACACCCATTTTCCGGCAGGCCGGTTACGAAGCGCTAGTAAATCTTTACCCGTGATATCAAGATCCCTAAGGCTTTTGATCGGCAGGTTTTGATAAGTATTTTGAATGTCCTTTAGTTTTTCATCATCCAGTTTTTC  >  CP006881/2173713‑2173968
                                                                                                                                        |                                                                                                                       
aatTCAATAAGGTCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTccggccgg                                                                                                                       >  6:55429/1‑139 (MQ=255)
aatTCAATAAGGTCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTccggccgg                                                                                                                       >  4:235684/1‑139 (MQ=255)
     aaTAAGGTCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTATCCGGCCGGCCGGt                                                                                                                  >  8:95464/1‑139 (MQ=255)
            tCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAg                                                                                                           >  8:151193/1‑139 (MQ=255)
            tCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTAGATAGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTATCCGGCCGGCCGGTTTCGAAg                                                                                                           >  8:289408/1‑139 (MQ=255)
                ttCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAgcg                                                                                                         <  7:253515/137‑1 (MQ=255)
                ttCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAgcg                                                                                                         <  4:259549/137‑1 (MQ=255)
                     aaTGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    <  5:55429/137‑2 (MQ=255)
                     aaTGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    <  1:20693/137‑2 (MQ=255)
                     aaTGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    <  3:235684/137‑2 (MQ=255)
                      aTGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCgcaagcaag                                                                                                 <  8:395223/139‑2 (MQ=255)
                            aCCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCgcaagcaa                                                                                                  <  4:22719/132‑1 (MQ=255)
                            aCCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCgcaagcaa                                                                                                  >  3:22719/1‑132 (MQ=255)
                            aCCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTa                                                                                           >  2:268091/1‑139 (MQ=255)
                            aCCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTa                                                                                           >  6:293976/1‑139 (MQ=255)
                            aCCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTa                                                                                           >  3:422298/1‑139 (MQ=255)
                                 aTGTCTTCAGCCACTCCTCTATGTTTTTCTTTTGATTGGAGCGCTTCCCTGTCGCAACCGCCTGCTCGATCCACTGGAATTCTTCTGACCCCACTATTCCGGCCGGCCGGTTTCGCAGCGCAAGAACGTCATTACCCGt                                                                                      >  4:134381/1‑139 (MQ=255)
                                          gCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAg                                                                             <  1:376655/139‑1 (MQ=255)
                                          gCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAg                                                                             <  8:110915/139‑1 (MQ=255)
                                          gCCACTCCTATATGTGTTTCTTTTGATTGGAGATCTTCCCTGTCAAAACAGCCTGCTCTATCCACTGTAATTCTTCTGACACCCATTTTCCGGACGGCCGGTTTCTAAGCGCAAGCAAGTACTTACGCGTGATATCatg                                                                             <  6:365691/139‑3 (MQ=255)
                                             aCTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTGTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATc                                                                          >  1:302637/1‑139 (MQ=255)
                                              ctcctcTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATcc                                                                         >  2:271651/1‑139 (MQ=255)
                                               tcctcTATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGACCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATcct                                                                        >  4:312202/1‑138 (MQ=255)
                                                    tATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTTGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAgg                                                                   >  4:422123/1‑139 (MQ=255)
                                                    tATGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAgg                                                                   >  6:440005/1‑139 (MQ=255)
                                                     aTGTGTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGCCACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGc                                                                  >  8:385660/1‑139 (MQ=255)
                                                      tgtgTTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCt                                                                 >  7:182370/1‑139 (MQ=255)
                                                         gtTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    <  1:425062/101‑2 (MQ=255)
                                                         gtTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    >  2:425062/1‑100 (MQ=255)
                                                         gtTTCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCtttt                                                              >  3:412317/1‑139 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTcc                                                                                              <  7:318945/105‑2 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTcc                                                                                              >  8:318945/1‑104 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTg                                                                                     <  6:238132/114‑1 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTg                                                                                     <  7:94477/114‑1 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTg                                                                                     >  5:238132/1‑114 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTg                                                                                     >  8:94477/1‑114 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGa                                                            >  5:204147/1‑139 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGa                                                            >  7:140487/1‑139 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGa                                                            >  8:253740/1‑139 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATAAAAAGATCCTTAAGGCTTTTGa                                                            >  3:179756/1‑139 (MQ=255)
                                                           ttCTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTGTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCGTAAGGCTTTTGa                                                            >  6:11784/1‑139 (MQ=255)
                                                             cTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAg                                                                             <  4:58211/120‑1 (MQ=255)
                                                             cTTTTGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAg                                                                             >  3:58211/1‑120 (MQ=255)
                                                              ttttGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAATCAAGTCCGTACACGTGATATCAAGATCCTTAAGGCTTTTGATCg                                                         >  8:434399/1‑139 (MQ=255)
                                                                ttGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCgg                                                        >  3:199180/1‑138 (MQ=255)
                                                                 tGATTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGc                                                       <  1:429698/138‑1 (MQ=255)
                                                                   aTTGGAGAGCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTATCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAgg                                                    <  7:95464/139‑1 (MQ=255)
                                                                        agagCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    >  8:399153/1‑85 (MQ=255)
                                                                        agagCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAgc                                                                                                    <  7:399153/86‑2 (MQ=255)
                                                                         gagCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGa                                              <  8:140487/139‑1 (MQ=255)
                                                                         gagCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGa                                              <  7:151193/139‑1 (MQ=255)
                                                                          agCTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGAt                                             <  1:271651/139‑1 (MQ=255)
                                                                            cTTCCCTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATaa                                           <  7:385660/139‑1 (MQ=255)
                                                                               cccTGTCACAACAGCCTGCTCTATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAg                                          <  7:434399/136‑1 (MQ=255)
                                                                                ccTGTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAgcg                                        <  5:293976/138‑3 (MQ=255)
                                                                                   gTCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAgcgtact                                    <  1:86079/139‑7 (MQ=255)
                                                                                    tCACAACAGCCTGCTCGATCCCCTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTTCCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCTGGTGTTGAGAAgcgtact                                    >  1:415330/1‑132 (MQ=255)
                                                                                    tCACAACAGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAgcgtact                                    <  3:312202/138‑7 (MQ=255)
                                                                                      acaacaGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGa                                              <  6:431444/126‑1 (MQ=255)
                                                                                      acaacaGCCTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGa                                              >  5:431444/1‑126 (MQ=255)
                                                                                             ccTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCtt                          <  4:199180/139‑1 (MQ=255)
                                                                                             ccTGCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCtt                          <  1:268091/139‑1 (MQ=255)
                                                                                                gCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCTTCAg                       >  1:306096/1‑139 (MQ=255)
                                                                                                gCTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCTTCAg                       >  2:18396/1‑139 (MQ=255)
                                                                                                 cTCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCTTCAGt                      <  5:440005/139‑1 (MQ=255)
                                                                                                  tCGATCCACTGTAATTCTTCTGACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCTTCAGtt                     >  8:132528/1‑139 (MQ=255)
                                                                                                                     ctgACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCTTCAGTTTCTTTTCATCCAGTTTTTc  >  7:392584/3‑139 (MQ=255)
                                                                                                                     ctgACACCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAGCGTACTGAATGTCCTTCAGTTTCTTTTCATCCAGTTTTTc  >  6:198396/3‑139 (MQ=255)
                                                                                                                        acacCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAgcgt                                       <  6:88301/99‑4 (MQ=255)
                                                                                                                        acacCCATTTTCCGGCCGGCCGGTTTCGAAGCGCAAGCAAGTCCTTACCCGTGATATCAAGATCCTTAAGGCTTTTGATCGGCAGGTTTTGATAAgcgt                                       >  5:88301/1‑96 (MQ=255)
                                                                                                                                        |                                                                                                                       
AATTCAATAAGGTCTTTTCTTAATGTTGACCGCATGTCTTCAGCCACTCCTCTATGTGTTTCTTTTGATTGGAGAGCTTTCCTGTCACAACAGCCTGCTCGATCCGCTGTAATTCTTCCGACACCCATTTTCCGGCAGGCCGGTTACGAAGCGCTAGTAAATCTTTACCCGTGATATCAAGATCCCTAAGGCTTTTGATCGGCAGGTTTTGATAAGTATTTTGAATGTCCTTTAGTTTTTCATCATCCAGTTTTTC  >  CP006881/2173713‑2173968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A