Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F58 I1 R3
|
118 |
63.0 |
2369054 |
95.4% |
2260077 |
127.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
2,383,370 |
T→C |
I14V (ATC→GTC) |
U712_12110 ← |
Uncharacterized protein yqgX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,383,370 | 0 | T | C | 100.0%
| 98.1
/ NA
| 28 | I14V (ATC→GTC) | U712_12110 | Uncharacterized protein yqgX |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/15); total (13/15) |
GCGCCCCAATATGGTCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGATGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTCTTTTTTATGCTCTTATTATGAGGGTTTTTGAAA > CP006881/2383238‑2383473
|
gcgcCCCAATATGGTCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGaa > 4:96924/1‑138 (MQ=255)
aaTATGGTCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCg < 4:281236/139‑1 (MQ=255)
tCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTTTGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCTAAAATCAGACATTGATCATCACGGCCGAGAAAATATGCGTTCGCtt > 1:238527/1‑139 (MQ=255)
tCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCtt > 2:90166/1‑139 (MQ=255)
tCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCATTTTTCTTTTATGTATTGATTTATTTTATGTCCCTCGCCGCCCGGAGCAAAAATCAGACAATGATAATCACTGACGAGAAAATATGCGTGCGCtt > 1:222031/1‑139 (MQ=255)
aaaaTGAGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATTTATTGATTGATTTTAATTACCTAGACGCCCCGATCAAAAATAACACATTGATAATCACTGACTAGAAAATATGAGTTCGCTTg > 4:162222/1‑138 (MQ=255)
aTGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATc < 7:250990/139‑1 (MQ=255)
tAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTgg < 3:96924/139‑1 (MQ=255)
agaaaaaTGGCTTATGGCGTCAGCCCTTTTTCTTTTATGTATTTATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCa < 2:222031/136‑1 (MQ=255)
aGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACAGTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCa > 3:12973/1‑139 (MQ=255)
aaTGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGt > 4:113784/1‑139 (MQ=255)
aaTGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGt > 5:279813/1‑139 (MQ=255)
aGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTc < 6:137460/139‑1 (MQ=255)
aGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTc < 6:133028/139‑1 (MQ=255)
ggCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCa < 5:185780/139‑1 (MQ=255)
ggCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCa < 6:279813/139‑1 (MQ=255)
ccTTTTTCTTTTATGTATTGATTGATTTTATGTCCCGCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAAAATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATATCACTATTATCa < 6:94252/139‑1 (MQ=255)
ttATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTc > 4:231269/1‑119 (MQ=255)
ttATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTc < 3:231269/119‑1 (MQ=255)
ttATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCtctttct < 8:109730/138‑1 (MQ=255)
aTGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTGtttt > 4:118004/1‑139 (MQ=255)
ttgattgaTTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTCTTTTTTATg < 1:90166/139‑1 (MQ=255)
tgatttatTTTATGGCCCTCGCCGCCCGGATCAAAAATCATACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTCTTTTTTATg < 3:162222/138‑1 (MQ=255)
tgattgatTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTCTTTTTTATg < 3:113784/138‑1 (MQ=255)
attgattTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCTGCCCTACTGGCATACGACTACAATTCACTATTATCACCTCTTTCTTatatatccac > 6:294941/1‑135 (MQ=255)
cTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACtgacga > 7:191556/1‑44 (MQ=255)
cTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACtgacga < 8:191556/44‑1 (MQ=255)
cccGGATCAAAAATCAGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTCTTTTTTATGCTCTTATTATGAGGGTTTTTGaaa > 6:195060/1‑138 (MQ=255)
aGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACtatta < 7:114654/79‑1 (MQ=255)
aGACATTGATCATCACTGACGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACtatta > 8:114654/1‑79 (MQ=255)
|
GCGCCCCAATATGGTCAAAATGGGCATGTGTAAGCAAAATGGCTAAAGGCGTCAGCCCTTTTTCTTTTATGTATTGATTGATTTTATGTCCCTCGCCGCCCGGATCAAAAATCAGACATTGATCATCACTGATGAGAAAATATGCGTTCGCTTGAATCGGCCCTACTGGCATTCGTCTCCATTTCACTATTATCACCTCTTTCTTTTTTATGCTCTTATTATGAGGGTTTTTGAAA > CP006881/2383238‑2383473
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
