Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F56 I13 R1	121	87.9	3230772	95.5%	3085387	127.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	1,473,627	A→G	Q445R (CAA→CGA)	U712_07565 →	PTS system fructose‑specific EIIABC component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	1,473,627	0	A	G	100.0%	383.0 / NA	100	Q445R (CAA→CGA)	U712_07565	PTS system fructose‑specific EIIABC component
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (43/57); total (43/57)

ATTGCCGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCAATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGCGATCGATATGGGCGGTC  >  CP006881/1473491‑1473758

aTTGCCGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGAt                                                                                                                                   <  5:179853/139‑1 (MQ=255)

   gCCGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGAttt                                                                                                                                 <  3:328374/138‑1 (MQ=255)

   gCCGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGAATTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGAttt                                                                                                                                 <  6:38839/138‑1 (MQ=255)

     cGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTgtc                                                                                                                              <  4:216531/139‑1 (MQ=255)

     cGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTgtc                                                                                                                              <  3:46501/139‑1 (MQ=255)

     cGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTgtc                                                                                                                              <  3:110530/139‑1 (MQ=255)

      ggATTCCTTGCCGGTTATGTCTTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTgtcg                                                                                                                             >  8:390494/1‑139 (MQ=255)

       gATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTgtcgt                                                                                                                            <  1:180025/139‑1 (MQ=255)

            cTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATa                                                                                                                       <  4:289606/139‑1 (MQ=255)

            cTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATa                                                                                                                       <  2:331107/139‑1 (MQ=255)

              tGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATaca                                                                                                                     >  7:74006/1‑139 (MQ=255)

                         tCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCgg                                                                                                           <  6:327716/138‑1 (MQ=255)

                                   aCTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAAt                                                                                                >  3:355425/1‑139 (MQ=255)

                                                      tttATCCCTCAGTCACTTGATGGATTAAAACCTGGTTTGATTTACCCGCTGTGCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGACTTTCTTAACAAACTGGCtt                                                                              >  8:10683/1‑138 (MQ=255)

                                                        tATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGa                                                                            >  4:294937/1‑138 (MQ=255)

                                                        tATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGa                                                                            >  8:77635/1‑138 (MQ=255)

                                                        tATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGa                                                                            >  7:93399/1‑138 (MQ=255)

                                                        tATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGa                                                                            >  7:87652/1‑138 (MQ=255)

                                                         aTCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGaa                                                                           <  2:155747/138‑1 (MQ=255)

                                                         aTCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGaa                                                                           <  7:377127/138‑1 (MQ=255)

                                                          tCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAg                                                                         >  2:21443/1‑139 (MQ=255)

                                                             cTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      <  8:93399/139‑1 (MQ=255)

                                                             cTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      <  8:87652/139‑1 (MQ=255)

                                                             cTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      <  7:390494/139‑1 (MQ=255)

                                                             cTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGGTCGGTATTTTTATCACTGGCGTATTAATGCGATTCGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      <  6:276335/139‑1 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAg                                                                                                              <  4:168685/97‑1 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAg                                                                                                              >  3:168685/1‑97 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCAt                                                                                                        <  6:329475/103‑1 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCAt                                                                                                        >  5:329475/1‑103 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGaa                                                                           <  7:104637/132‑1 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGaa                                                                           >  8:104637/1‑132 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      >  1:335717/1‑137 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      <  2:335717/137‑1 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTg                                                                    >  7:110112/1‑139 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTg                                                                    >  4:198027/1‑139 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTg                                                                    >  5:390846/1‑139 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTCGCTTGAAAGCCTTg                                                                    >  3:122324/1‑139 (MQ=255)

                                                               cAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACAACTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTg                                                                    >  7:61208/1‑139 (MQ=255)

                                                                aGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTg                                                                    <  2:137329/138‑1 (MQ=255)

                                                                    aCTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTAc                                                                <  7:24407/138‑1 (MQ=255)

                                                                      ttGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTg                                                              >  8:138156/1‑138 (MQ=255)

                                                                        gATGGATTAAAACCTGTCTTGATATACCCGCTGTGAGGTATTTTTCTCACTGGCGTATTAATGCGATTTGTCGTCAAAACACCTGTCGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGa                                                            <  8:80564/138‑1 (MQ=255)

                                                                          tGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCGTTTGTACTGGaaa                                                          >  2:196251/1‑138 (MQ=255)

                                                                          tGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAAc                                                         >  5:181940/1‑139 (MQ=255)

                                                                             aTTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCtt                                                      <  1:21443/139‑1 (MQ=255)

                                                                              ttAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCTCTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtg                                                     >  8:128303/1‑139 (MQ=255)

                                                                              ttAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCtt                                                      <  6:390846/138‑1 (MQ=255)

                                                                              ttAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtg                                                     >  3:137487/1‑139 (MQ=255)

                                                                              ttAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtg                                                     >  4:183892/1‑139 (MQ=255)

                                                                                aaaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGa                                                            <  7:282798/130‑1 (MQ=255)

                                                                                aaaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGa                                                            >  8:282798/1‑130 (MQ=255)

                                                                                aaaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAACCCTtgtg                                                   >  8:81073/1‑139 (MQ=255)

                                                                                aaaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtgtg                                                   >  2:269163/1‑139 (MQ=255)

                                                                                aaaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtgtg                                                   >  8:300244/1‑139 (MQ=255)

                                                                                 aaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCTCTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtgtg                                                   <  7:128303/138‑1 (MQ=255)

                                                                                 aaaCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTtgtg                                                   <  3:183892/138‑1 (MQ=255)

                                                                                   aCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTa                                                <  1:259504/139‑1 (MQ=255)

                                                                                   aCCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTa                                                <  1:270974/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  4:220694/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  3:200512/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  4:137487/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  7:300244/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  7:17454/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  7:180751/139‑1 (MQ=255)

                                                                                     cTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  4:61582/139‑1 (MQ=255)

                                                                                     atGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTCGCTTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  2:121365/138‑1 (MQ=255)

                                                                                       gTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATacac                                                                                                                    <  2:344304/67‑1 (MQ=255)

                                                                                       gTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATacac                                                                                                                    >  1:344304/1‑67 (MQ=255)

                                                                                       gTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTTGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTaa                                               <  8:111429/136‑1 (MQ=255)

                                                                                       gTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTaa                                               >  7:111429/1‑136 (MQ=255)

                                                                                       gTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATgg                                            >  6:307185/1‑139 (MQ=255)

                                                                                       gTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATgg                                            >  8:103237/1‑139 (MQ=255)

                                                                                        ttttGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATggg                                           >  7:132788/1‑139 (MQ=255)

                                                                                        ttttGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATggg                                           >  8:356212/1‑139 (MQ=255)

                                                                                           tGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGta                                         <  7:192782/138‑1 (MQ=255)

                                                                                           tGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAAATTCTTAACAAACTTGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGta                                         <  7:105794/138‑1 (MQ=255)

                                                                                           tGATTTACCCGCTGTGCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGta                                         <  7:77635/138‑1 (MQ=255)

                                                                                               ttACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGta                                         <  5:273834/134‑1 (MQ=255)

                                                                                               ttACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGta                                         >  6:273834/1‑134 (MQ=255)

                                                                                                  cccGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTg                                 >  3:399878/1‑139 (MQ=255)

                                                                                                  cccGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTg                                 >  3:390941/1‑139 (MQ=255)

                                                                                                    cGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTggg                               <  6:181573/139‑1 (MQ=255)

                                                                                                    cGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTggg                               <  8:132788/139‑1 (MQ=255)

                                                                                                    cGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGGCAAAACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCGTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTggg                               <  6:397098/139‑1 (MQ=255)

                                                                                                    cGCTGTTAGGTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCGTAACAAACTGGCTTGACAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTggg                               <  6:248566/139‑1 (MQ=255)

                                                                                                            ggTATTTTTATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCatga                       <  7:356212/139‑1 (MQ=255)

                                                                                                                 ttttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      <  5:70706/87‑1 (MQ=255)

                                                                                                                 ttttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCt                                                                      >  6:70706/1‑87 (MQ=255)

                                                                                                                 ttttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              <  3:35693/111‑1 (MQ=255)

                                                                                                                 ttttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAAt                                              >  4:35693/1‑111 (MQ=255)

                                                                                                                  tttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGcg                  <  7:103237/138‑1 (MQ=255)

                                                                                                                  tttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGcg                  <  5:307185/138‑1 (MQ=255)

                                                                                                                   ttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTggg                               >  6:157253/1‑124 (MQ=255)

                                                                                                                   ttATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTggg                               <  5:157253/124‑1 (MQ=255)

                                                                                                                    tATCACTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGcgat                <  8:110112/138‑1 (MQ=255)

                                                                                                                        aCTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCatgat                      <  4:105523/128‑1 (MQ=255)

                                                                                                                        aCTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCatgat                      >  3:105523/1‑128 (MQ=255)

                                                                                                                        aCTGGCGTATTAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGCGATCGata           >  3:164394/1‑139 (MQ=255)

                                                                                                                                 ttAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGCGATCGATATGGGCGGt   <  4:355425/138‑1 (MQ=255)

                                                                                                                                 ttAATGCGATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGCGATCGATATGGGCGGTc  >  3:300872/1‑139 (MQ=255)

ATTGCCGGATTCCTTGCCGGTTATGTCGTGATTTTACTGAAAAAAGTATTTACGTTTATCCCTCAGTCACTTGATGGATTAAAACCTGTTTTGATTTACCCGCTGTTCGGTATTTTTATCACTGGCGTATTAATGCAATTTGTCGTCAATACACCTGTAGCGGCATTTATGAATTTCTTAACAAACTGGCTTGAAAGCCTTGGTACTGGAAACCTTGTGTTAATGGGTATTATCTTGGGCGGCATGATGGCGATCGATATGGGCGGTC  >  CP006881/1473491‑1473758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A