Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F59 I7 R4 119 106.4 3785156 95.3% 3607253 127.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 1,653,530 C→T T125I (ACA→ATA)  U712_08495 → GTP‑sensing transcriptional pleiotropic repressor CodY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,653,5300CT96.2% 349.3 / 2.8 105T125I (ACA→ATA) U712_08495GTP‑sensing transcriptional pleiotropic repressor CodY
Reads supporting (aligned to +/- strand):  ref base C (2/2);  new base T (68/33);  total (70/35)
Fisher's exact test for biased strand distribution p-value = 5.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01

Only 100 of 105 total aligned reads displayed.

TCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAG  >  CP006881/1653401‑1653664
                                                                                                                                 |                                                                                                                                      
tCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCt                                                                                                                               >  8:43457/1‑139 (MQ=255)
tCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCt                                                                                                                               >  2:134377/1‑139 (MQ=255)
 cccTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGCGGCGGGGAATGATTAGGAATACTTATTCtt                                                                                                                              >  6:395770/1‑139 (MQ=255)
   cTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTc                                                                                                                            >  7:445766/1‑139 (MQ=255)
              tctAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTAc                                                                                                                    >  2:392866/1‑136 (MQ=255)
                  aCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAgct                                                                                                               <  7:6791/137‑3 (MQ=255)
                  aCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               <  1:320770/137‑1 (MQ=255)
                  aCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               <  4:325328/137‑1 (MQ=255)
                  aCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               <  2:401428/137‑1 (MQ=255)
                       gATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               <  3:30429/132‑1 (MQ=255)
                       gATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               >  4:30429/1‑132 (MQ=255)
                         tatTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAtcaattcaat                                                                                                      <  5:107222/139‑1 (MQ=255)
                              aTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa                                                                                                 >  8:371577/1‑139 (MQ=255)
                              aTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa                                                                                                 <  1:419109/139‑1 (MQ=255)
                                  tGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGAc                                                                                             >  7:84282/1‑139 (MQ=255)
                                  tGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGAc                                                                                             >  5:202719/1‑139 (MQ=255)
                                   gAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGAc                                                                                             <  8:84282/138‑1 (MQ=255)
                                   gAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACt                                                                                            >  2:141175/1‑139 (MQ=255)
                                    aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               <  4:155239/119‑1 (MQ=255)
                                    aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGAt                                                                                                               >  3:155239/1‑119 (MQ=255)
                                    aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACt                                                                                            >  3:207323/1‑138 (MQ=255)
                                     atatACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAATCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGTATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACtt                                                                                           <  8:206023/138‑1 (MQ=255)
                                      tataCTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTaa                                                                                         >  6:445771/1‑139 (MQ=255)
                                         aCTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc                                                                                      >  5:357114/1‑139 (MQ=255)
                                         aCTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc                                                                                      >  6:448401/1‑139 (MQ=255)
                                          cTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc                                                                                      <  4:374595/138‑1 (MQ=255)
                                           tGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc                                                                                      >  6:303845/1‑137 (MQ=255)
                                           tGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc                                                                                      >  7:654/1‑137 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCTTCGGAGGCGGGGAAAGATAAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGAGTTAATTCTAg                                                                                   >  7:304065/1‑139 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTa                                                                                                                                   <  4:469865/91‑1 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTa                                                                                                                                   >  3:469865/1‑91 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGCCGAGGACTTAATTCTAg                                                                                   >  4:164690/1‑139 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGAt                                                                                                <  3:121766/126‑1 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGAt                                                                                                >  4:121766/1‑126 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc                                                                                      >  6:436118/1‑136 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg                                                                                   >  5:112793/1‑139 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg                                                                                   >  6:114665/1‑139 (MQ=255)
                                            gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg                                                                                   >  2:460421/1‑139 (MQ=255)
                                             cTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg                                                                                   <  7:342929/138‑1 (MQ=255)
                                             cTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg                                                                                   <  7:275126/138‑1 (MQ=255)
                                               ttCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTACCAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAAATCAATGACGATGACTTAATTCTAGCt                                                                                 >  3:106785/1‑138 (MQ=255)
                                                tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTg                                                                                >  5:217149/1‑138 (MQ=255)
                                                  ccTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGaa                                                                              >  5:74422/1‑138 (MQ=255)
                                                     gTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACg                                                                          >  3:200356/1‑139 (MQ=255)
                                                       tGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTTAATACGgc                                                                        >  6:102120/1‑139 (MQ=255)
                                                         agaACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgcg                                                                       <  1:460421/138‑1 (MQ=255)
                                                         agaACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgcg                                                                       <  5:436118/138‑1 (MQ=255)
                                                           aaCAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa                                                                    >  1:3632/1‑139 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgcgc                                                                      >  7:393649/1‑132 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGgcgc                                                                      <  8:393649/132‑1 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt                                                               >  5:391223/1‑139 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt                                                               >  7:344177/1‑139 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt                                                               >  7:254135/1‑139 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt                                                               >  2:296338/1‑139 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt                                                               >  4:264361/1‑139 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa                                                                    <  2:342259/134‑1 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa                                                                    >  1:342259/1‑134 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCAGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa                                                                                                 <  8:406808/105‑1 (MQ=255)
                                                                agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCAGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa                                                                                                 >  7:406808/1‑105 (MQ=255)
                                                                  aCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGt                                                             <  5:114665/139‑1 (MQ=255)
                                                                     tGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGTAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTAAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCg                                                           >  7:20144/1‑138 (MQ=255)
                                                                     tGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCg                                                           >  8:37773/1‑138 (MQ=255)
                                                                     tGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCg                                                           >  1:461256/1‑138 (MQ=255)
                                                                     tGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCg                                                           >  4:120852/1‑138 (MQ=255)
                                                                       tttCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGaa                                                        >  3:224054/1‑139 (MQ=255)
                                                                       tttCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGat                                                        >  8:210378/1‑138 (MQ=255)
                                                                           aaGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGa                                                    <  1:256365/139‑1 (MQ=255)
                                                                           aaGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGa                                                    <  2:297097/139‑1 (MQ=255)
                                                                            aGCTGGTTTAACAACAATTGTGCCGATCATCTGAGGCGGGGAAAGATTAGGAATACTGATTCTTTCGAGTTTACAAGATCAATTCAATGACGATGACTTAATGCTAGCTGAATCCGGCGCACCAGTTGTCGGAATGGa                                                    >  6:431599/1‑138 (MQ=255)
                                                                            aGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGa                                                    >  2:256365/1‑138 (MQ=255)
                                                                            aGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGa                                                    >  5:348043/1‑138 (MQ=255)
                                                                            aGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTATTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGTATGGa                                                    >  2:199920/1‑138 (MQ=255)
                                                                                 gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc                                               >  7:70490/1‑138 (MQ=255)
                                                                                 gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc                                               >  7:171940/1‑138 (MQ=255)
                                                                                 gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc                                               >  7:295330/1‑138 (MQ=255)
                                                                                 gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc                                               >  5:60406/1‑138 (MQ=255)
                                                                                           aaTTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGaaa                                      >  6:351400/1‑137 (MQ=255)
                                                                                             ttGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGc                                  <  6:113617/139‑1 (MQ=255)
                                                                                                tgCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCaga                               <  7:297404/139‑1 (MQ=255)
                                                                                                tgCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCag                                >  1:257293/1‑138 (MQ=255)
                                                                                                tgCCGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTATTTCGCGTTTACAAGATCAATTCAATCACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCag                                >  5:89594/1‑138 (MQ=255)
                                                                                                  ccGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCagaag                             <  2:3632/139‑1 (MQ=255)
                                                                                                  ccGATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCagaag                             <  6:419905/139‑1 (MQ=255)
                                                                                                    gATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa                                                                    >  3:155725/1‑98 (MQ=255)
                                                                                                    gATCATCGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa                                                                    <  4:155725/98‑1 (MQ=255)
                                                                                                     atcatcGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa                                                                                                 >  8:233195/1‑68 (MQ=255)
                                                                                                     atcatcGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa                                                                                                 <  7:233195/68‑1 (MQ=255)
                                                                                                     atcatcGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGaaa                          >  5:160661/1‑139 (MQ=255)
                                                                                                        atcGGAGGCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAAtt                        <  5:102120/138‑1 (MQ=255)
                                                                                                               gCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAgg                 >  6:324268/1‑138 (MQ=255)
                                                                                                               gCGGGGAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAgg                 >  8:58897/1‑138 (MQ=255)
                                                                                                               gCGGGGAAAGATTAGGAATACTTATTCTTTAGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAgg                 >  6:168737/1‑138 (MQ=255)
                                                                                                                   gtaaaGATTAGGAATACTTATTCTTTAGCGTTTACTAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGgaagca            <  8:20144/137‑1 (MQ=255)
                                                                                                                    gAAAGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGgaagc             >  2:177780/1‑137 (MQ=255)
                                                                                                                       aGATTAGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAGTCCTAAGAGAATAGGCAGAAGAAATTGATGAGgatgcaag          >  6:257413/1‑137 (MQ=255)
                                                                                                                            aGGAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGgaagcaagaagca     >  8:133361/1‑137 (MQ=255)
                                                                                                                             ggAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAg  <  7:133361/139‑1 (MQ=255)
                                                                                                                             ggAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAg  <  8:295330/139‑1 (MQ=255)
                                                                                                                             ggAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAg  >  1:236546/1‑139 (MQ=255)
                                                                                                                             ggAATACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAg  >  3:67810/1‑139 (MQ=255)
                                                                                                                                 |                                                                                                                                      
TCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAG  >  CP006881/1653401‑1653664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A