Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F59 I1 R1 23 54.9 2144786 90.8% 1947465 141.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,535,977 T→A Y214F (TAC→TTC)  narV ← nitrate reductase Z subunit gamma

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,535,9770TA98.6% 188.6 / NA 69Y214F (TAC→TTC) narVnitrate reductase Z subunit gamma
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (40/28);  minor base C (1/0);  total (41/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TACACCTGCGGTTTCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGTACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGAC  >  NC_000913/1535842‑1536116
                                                                                                                                       |                                                                                                                                           
tACACCTGCGGTTTCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCaaa                                                                                                                                      <  1:63/143‑1 (MQ=255)
 acacCTGCGGTTTCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAAc                                                                                                                                     >  2:9054/1‑143 (MQ=255)
  cacCTGCGGTTTCGTTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGTCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACg                                                                                                                                    <  2:530026/143‑1 (MQ=255)
    ccTGCGGTTTCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGATATACGGCCAGGGTGAACTCATCGCCGCGAACGCCCAACTTGCTAGCGACGAGTAAAGAACGCACCCGgc                                                                                                                                  >  2:927937/1‑143 (MQ=255)
       gCGGGTTCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGgcgcg                                                                                                                               <  1:1016504/143‑1 (MQ=255)
             tCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAACTTATCACCGCTATTGCTTAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTacac                                                                                                                         >  1:241825/1‑143 (MQ=255)
                 tAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAGGAACTCAAACGGCGCGCTCcacacct                                                                                                                     >  2:663975/1‑141 (MQ=255)
                    cGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAAAGCACAATTTGATATCGACGAGGAAAGAACTCCAACGGCGCGGCGCACACATGCa                                                                                                                  >  1:231575/1‑143 (MQ=255)
                    cGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTAACGCCGAAGGCGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCa                                                                                                                  <  1:729588/143‑1 (MQ=255)
                     gTTCTCCTGTGACTGTATAACTATCATAGTCTGCAAGGGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCTCAATTTAATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCAc                                                                                                                 <  2:72298/143‑1 (MQ=255)
                         tcCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGt                                                                                                             >  1:577615/1‑143 (MQ=255)
                         cccTGTGCCTGGAGTCCTAGCAGAGCCAGCAAGTGGCCGGAGAGCGAAGGGCTAGCCGGCCAGGGTGAAAGTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGt                                                                                                             <  1:664853/142‑1 (MQ=255)
                            tgtgGCTGGAGAACTATCATGGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCgg                                                                                                          <  2:414192/143‑1 (MQ=255)
                            tgtgACTGGAGAACTATCATAGCGTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCgg                                                                                                          >  2:1059369/1‑143 (MQ=255)
                              tgACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGt                                                                                                        <  1:409046/143‑1 (MQ=255)
                              tgACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGACAGCGCCGAGTAAAGAACGCAAACGGCGCGCTCCACACATGCACCAGTCggct                                                                                                        >  2:198090/1‑141 (MQ=255)
                                  tGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGCACGCAAACGGCGCCGCCCACACACGCACCAGTCGGGCGAAc                                                                                                    >  2:345420/1‑143 (MQ=255)
                                  tGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAAc                                                                                                    >  1:250698/1‑143 (MQ=255)
                                  tGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGAGaaa                                                                                                    >  1:985105/1‑142 (MQ=255)
                                  tGGAGAACTATCAGAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAAc                                                                                                    <  1:577331/143‑1 (MQ=255)
                                    gagaGCTATCATGGCCGGCGAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAGCTCAAACGGAGAGCTCCACACATGCACCAGTCGGGTGAACgg                                                                                                  <  2:381958/143‑1 (MQ=255)
                                    gagaACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACgg                                                                                                  >  1:708544/1‑143 (MQ=255)
                                    gagaACTAGCATGGCCGGCAAGTGGCCGGAGAGCGAGGGGCTATCCGGGCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAActt                                                                                                  <  2:997222/143‑3 (MQ=255)
                                        aCTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAag                                                                                              <  2:511657/143‑1 (MQ=255)
                                            tcgtAGGCTGCGAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCa                                                                                          <  2:405222/140‑1 (MQ=255)
                                             cctggCCGGCGAGTGGCCGGAGCGCGAACGGCTATCCGGCCATGGTGAAATTATCGCCGCGCACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAg                                                                                         <  2:511530/139‑1 (MQ=255)
                                             cATAGCCTGCAAGTGGCCGGAGCGCGAAGGGCTCTCCGGCCTGGGTGCAATTATCGCCGCGAACGCACAAAATGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACCCATGCACCAGGCGGGTGAACGGGAAGAGCAg                                                                                         >  1:10857/1‑143 (MQ=255)
                                              aTAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAgg                                                                                        >  2:495808/1‑143 (MQ=255)
                                               tAGCCTGCAAGGGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATGGCCGCGAACGCACAATTTGATATCGAAGAGTAAGGAACTCAAACGGCGCGCCCCACACAAGCCACGAACGGGTGAACGGGAaggggagcc                                                                                       >  2:830320/1‑136 (MQ=255)
                                                aGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAAGTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGaa                                                                                      >  1:1023496/1‑143 (MQ=255)
                                                 gCCTGCAAGTGGCCGGAGAGCGAAGAGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTCAAGAAAGCAACATATGCGCTCCACACATGCACCAGTCGGGTGCACGGGAAGAGCGGGAAg                                                                                     >  1:1060192/1‑143 (MQ=255)
                                                   cTGCAATTGGCCGGAGAGCGAAGGGCTATCCGGCTAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGAt                                                                                   <  2:445140/143‑1 (MQ=255)
                                                    tGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTAACGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATg                                                                                  <  1:343181/143‑1 (MQ=255)
                                                    agaaaGGGGGCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATg                                                                                  <  2:1008758/140‑1 (MQ=255)
                                                          tGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCAtt                                                                            <  1:647087/143‑1 (MQ=255)
                                                            gCCGGAGAGCGGAGGCCGATCGGACCAGTGAGATTGTTTCGCGGCGAACGCACAAGTTGATATCGACGAGTAACGAACTCAAACGGCTCGCTCCACCCATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTcc                                                                          <  1:444209/143‑1 (MQ=255)
                                                            gCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGGGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGGGAACGGGAAGAGCGGGAAGAGGGTCATTcc                                                                          >  1:791809/1‑143 (MQ=255)
                                                              cGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTcccc                                                                        >  2:393311/1‑142 (MQ=255)
                                                              cGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGACATTCCCa                                                                        >  1:249024/1‑143 (MQ=255)
                                                               ggAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAAAGCACAATTTGATATCGGCGAGTAGAGAGCTCAGACGGCGCGGTCCCCACATGCACCAGTCGTGCGCACGGGAAGCGCAGGAAGCTCGTCATTCCCaa                                                                       >  1:202670/1‑143 (MQ=255)
                                                                          ggCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTCAAGAACTCAAACGGCGCGCTACACACATGCACCAGACGGGTGAACGGGAAGAGCAGAAAGATGGACATCCCCAACACCAGATGCa                                                            >  2:16956/1‑143 (MQ=255)
                                                                            cTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAgg                                                          >  2:917140/1‑143 (MQ=255)
                                                                             tATCCGGCCATGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGc                                                         <  2:156724/143‑1 (MQ=255)
                                                                             tATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACCGCAGATGCAgga                                                         >  2:99771/1‑142 (MQ=255)
                                                                              aTCCGGCCAGGGTGAAATTATCGCCGCGAACGAACAATATGATATCGAAGAGAAAAGAACTCAAACGACGCGCTCCACACATGCACGAGTCGGGCGAACAGGAAGAGCACGAAGATGCTCGCTGGCAACACCAGAAGCAGGCg                                                        >  2:691712/1‑143 (MQ=255)
                                                                                 cGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGaa                                                     <  2:43570/143‑1 (MQ=255)
                                                                                  ggCGAGGGAGAAATTATCGCCGCGAACGCACAATCTGATAGAGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAg                                                    <  1:646784/143‑1 (MQ=255)
                                                                                     cAGGGTGAAATTATCGCCGCGAAGGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGACGAAGGCGGAAGACg                                                 >  2:680517/1‑143 (MQ=255)
                                                                                        ggTGAAATTCTCGCCGCGAACGCGTAATTTGGAATCGACGAGTAAAGAACGCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAAc                                              <  1:700194/143‑1 (MQ=255)
                                                                                        ggTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGGGAACGGGGAGAGCAGGAGGGTGGTGATTCCCAACACGAGGTGCAGGCGGAAGGCGAAc                                              >  1:354329/1‑143 (MQ=255)
                                                                                        ggTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCACCACACATGCACCAGTAGGGTGAACGGGAAGAACAGGAAGAGGGACATTCACAACACCAGATGCAAGCGGAAGACGAAc                                              >  2:279561/1‑143 (MQ=255)
                                                                                            aaaTTATCGCCGCGAACGCACAATTTGACATCGACGAGCAAAGAACTCAAACGGCCCCCTCCACACATGCACCAGCCCCGCGCACGGGACGAGCAGGACCATGGCCCCTCCCAACACCAGATCCAGGCGCAAGACCCACGccc                                          >  2:820592/1‑141 (MQ=255)
                                                                                             aaTTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTAc                                         >  2:1007993/1‑143 (MQ=255)
                                                                                              aTTATCGCCGCGAACGCACAATTTGATATCGACGAGTAATGAACGCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACg                                        <  2:951129/143‑1 (MQ=255)
                                                                                                  tCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGt                                    >  1:215440/1‑143 (MQ=255)
                                                                                                      cgcgAACGCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAg                                >  2:442148/1‑143 (MQ=255)
                                                                                                         gAACGCACAATTTGATATCGCCGAGTAAAGAACTCAACCGCCGCTCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCAt                             <  1:395201/143‑1 (MQ=255)
                                                                                                             gCACAATTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATctct                         >  1:329089/1‑143 (MQ=255)
                                                                                                               acgagtggATGTCGCCGAGTAAAGAACGCAAACGGCGCGGTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGa                       <  2:7839/136‑1 (MQ=255)
                                                                                                               acaATTTGATATCGACGAGTAAAGAACTCNAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCAACGCCGTTGAGCATCACTGa                       >  1:970068/1‑143 (MQ=255)
                                                                                                                  aTTTGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGa                    >  2:911308/1‑143 (MQ=255)
                                                                                                                     tGATATCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATcc                 <  1:310088/143‑1 (MQ=255)
                                                                                                                       atatCGACGAGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCCGTCGGGTGAACGGGAAGAGCAGGCAGATGGTCATTCCCAACACCAGCTGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGCCGATccac               >  1:125128/1‑143 (MQ=255)
                                                                                                                            gacgaGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACgg          >  1:435558/1‑143 (MQ=255)
                                                                                                                             acgaGTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGa         >  1:911728/1‑143 (MQ=255)
                                                                                                                                 gTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGCTGCAGGCGGAAGACGAACGCTACGCCGTTGGTCATCTCCGCCGATCCACCCCGGAAAgg     >  1:446927/1‑142 (MQ=255)
                                                                                                                                 gTAAAGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGt     >  2:842972/1‑143 (MQ=255)
                                                                                                                                   aaaGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGa   <  2:337052/143‑1 (MQ=255)
                                                                                                                                    aaGAACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGAc  >  2:161895/1‑143 (MQ=255)
                                                                                                                                       |                                                                                                                                           
TACACCTGCGGTTTCATTAACGTTCTCCTGTGACTGGAGAACTATCATAGCCTGCAAGTGGCCGGAGAGCGAAGGGCTATCCGGCCAGGGTGAAATTATCGCCGCGAACGCACAATTTGATATCGACGAGTAAAGTACTCAAACGGCGCGCTCCACACATGCACCAGTCGGGTGAACGGGAAGAGCAGGAAGATGGTCATTCCCAACACCAGATGCAGGCGGAAGACGAACGCTACGCCGTTGAGCATCTCTGACGATCCACCACGGAAAGTGAC  >  NC_000913/1535842‑1536116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A