Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F44 I1 R1 25 56.0 2153868 90.0% 1938481 142.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 786,462 (A)5→4 coding (830/1053 nt) aroG → 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913786,4580A.98.3% 255.0 / ‑3.3 60coding (826/1053 nt)aroG3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base . (31/28);  minor base G (1/0);  total (32/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01

CCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCAAAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACG  >  NC_000913/786319‑786593
                                                                                                                                           |                                                                                                                                        
ccATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGGAGGGCTGAACAAAGCAGGCCTGCCAGCAAAGGTGATGATCGCATACAGCCATGCTAACTCGTCGAAACAATTCagaa                                                                                                                                       >  2:639042/1‑143 (MQ=255)
ccATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaa                                                                                                                                       >  1:598180/1‑143 (MQ=255)
ccATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATACTAACTCGTCCAAAGAATTCagaa                                                                                                                                       >  1:604595/1‑143 (MQ=255)
cactatCATTCTGCGCGGCGGTAACGACCCTAACTACGGCGCGAACCACGTTGCTCAAGTGCAAGAAGGCCTGAACAACGCAGGCCTGCCAGCACAGGCGCTGATCGATCTCACCCATGCTAACTCGTCCAAACAATTCaaac                                                                                                                                       <  2:131135/140‑2 (MQ=255)
    atCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATCCTAACCAGTCCAAACAAGTCaaaagcaa                                                                                                                                   >  2:1010976/1‑139 (MQ=255)
     tCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCaaaagcagc                                                                                                                                  >  2:97373/1‑138 (MQ=255)
        ttCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCGGCCAGCACAGGTGATGATCGATTTCAGCCATGCTCACTCGTCCAAACACTTC‑AAAAGCAgatgg                                                                                                                              >  2:868239/1‑143 (MQ=255)
          cggcgcGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACCGGTCTCAATCGGAATCAGCCTTGCTAACTCGTCCAAACAATTC‑AAAAGCAgatggat                                                                                                                            <  1:737114/141‑1 (MQ=255)
            gcgcGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAgatggatga                                                                                                                          >  2:1007372/1‑142 (MQ=255)
                   ggTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGACGGGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATGC‑AAAAGCAGATGGATGTTTGTGCt                                                                                                                   >  2:1050688/1‑143 (MQ=255)
                     tgaggggCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGa                                                                                                                 <  1:137807/137‑1 (MQ=255)
                       aaGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACg                                                                                                               >  2:668375/1‑143 (MQ=255)
                            ccTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGGTAACTCGTCCAAACAATTC‑AAAGGCAGATGGATGTTTGTGCTGGCGTGTGc                                                                                                          >  1:935285/1‑143 (MQ=255)
                               aaCTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGCTCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCcag                                                                                                       <  1:653969/143‑1 (MQ=255)
                                  tACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTATGTGCTGACGTTTGCcagcag                                                                                                    >  2:449671/1‑143 (MQ=255)
                                    cAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCAAGCAGAt                                                                                                  >  2:1007008/1‑143 (MQ=255)
                                     aGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCGGACCAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCGAACAATTC‑AAAAGCAGATGGAGGCTCGTGCCGCCGTTTGCCGGCAGAtt                                                                                                 >  2:192482/1‑143 (MQ=255)
                                       ggcaaaGCACGTTTCCGAAGTGAAAGAAGGGCTGAACAAAGCAGGCTTGCCAGCACAGGGGATGATCGATGTCAGGCATGCTAACTCGGCCAATCAATTC‑AAAAGCAGATGGATGTTTGTGTTGACGTTTGCCAGCAGATTGc                                                                                               <  2:938111/139‑1 (MQ=255)
                                       cgcgAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGc                                                                                               >  1:299947/1‑143 (MQ=255)
                                            aGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGACATCAGATTGCCGGTg                                                                                          >  1:951805/1‑143 (MQ=255)
                                             gCACGGTGCTGAAGGGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTgg                                                                                         <  2:1057828/143‑1 (MQ=255)
                                                   tGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGaaaa                                                                                   <  1:919700/143‑1 (MQ=255)
                                                      tGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGc                                                                                >  1:683138/1‑143 (MQ=255)
                                                          gTGAAAGAAGGGCTGAACAAAGCAGACCTGCCAGCACAAGTGGTGGTCGATTTCAGCCATGCTAACTCGTGCAACCAATAC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGACGATTGCAGTTGGCGCACAGGcgact                                                                            >  1:599658/1‑139 (MQ=255)
                                                           tGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGGGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGCTGGATGTTTGTGCTGACGGTTGCCAGCAGAGTGCCGGTGGCGAAGAGGccgata                                                                           >  2:451395/1‑139 (MQ=255)
                                                             aaaGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCattatt                                                                         >  1:609458/1‑143 (MQ=255)
                                                              aagaagGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTg                                                                        <  1:658586/143‑1 (MQ=255)
                                                                 aagGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑g                                                                    >  1:609217/1‑143 (MQ=255)
                                                                     gcgtaccAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCTGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCTAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAt                                                                <  2:877998/137‑1 (MQ=255)
                                                                     gCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAt                                                                >  1:646888/1‑143 (MQ=255)
                                                                     gCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGACGGCAGTTTGTGCCGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAt                                                                <  1:588137/143‑1 (MQ=255)
                                                                         caCAAAGCAGGCCTGCCAGCACAGCTGATGATCGATTTCGGCCAGGCTAACTCGTCCAAACAAGTC‑GAAAGCAGATGGATGCGTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAtggtg                                                            <  2:521550/142‑1 (MQ=255)
                                                                         aaCAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAACGGCCATTATTGGC‑GTGAtggtg                                                            >  2:961348/1‑143 (MQ=255)
                                                                         aaCAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAtggtg                                                            >  2:353227/1‑143 (MQ=255)
                                                                         aaCAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCACTGCTGGAAAGACCAAATGATTAGTTAAAC‑TTTCTTCGGTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAtggtg                                                            >  1:788167/1‑143 (MQ=255)
                                                                             gaGCAGGTCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATGC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGaaa                                                        <  1:190636/142‑1 (MQ=255)
                                                                             aggCAGCCTTGTCAGCACAGGTGATCATCGATTTCAGGCATGCTACCTCGTCCTAACAATTC‑AAAAGCAGATGTGTGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGaaa                                                        <  2:96258/141‑1 (MQ=255)
                                                                             aaGTAGGCCTGCCAGCACAGGTCATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AACAGCAGCTGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGaaa                                                        <  2:569193/143‑1 (MQ=255)
                                                                             aaGCAGGCCCGCCAGCACAGGGGATGAGCGAGGGCAGCCACGCTAACTCGGCCAAACAATGC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGaaa                                                        <  1:14899/143‑1 (MQ=255)
                                                                                 aGGCCTGCCAGCACAGGTGATGATCGATTTCAGTCATGCTAACTCGTCCAAATAATTC‑AAAAGCAGATGGATGTTTGTGATGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCa                                                    <  1:82109/143‑1 (MQ=255)
                                                                                  ggCCTGCCAGCACAGGGGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCAt                                                   <  1:579552/143‑1 (MQ=255)
                                                                                     cTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCCTTATTCGC‑GTGATGGTGGCGAGCCATCtc                                                >  2:1071079/1‑142 (MQ=255)
                                                                                      tGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCtgg                                               <  2:788167/143‑1 (MQ=255)
                                                                                       gaccgCAAAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCtggt                                              <  1:663810/139‑1 (MQ=255)
                                                                                       gCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGGCCAAACAATGC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCtggt                                              <  2:862817/143‑1 (MQ=255)
                                                                                           gCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAAATC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGaa                                          <  1:381768/143‑1 (MQ=255)
                                                                                                     tgatCGATTTCAGCCATGCTAACTCGTCCAGACAATTC‑AAAAGCAGATGGATGTTTGTGCCGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCaga                                <  2:535945/143‑1 (MQ=255)
                                                                                                      gatCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCAATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCagag                               >  2:725148/1‑143 (MQ=255)
                                                                                                       atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGc                              >  2:575130/1‑143 (MQ=255)
                                                                                                       atCGATTTCAGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGGTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCACTCAGAGc                              >  1:357165/1‑143 (MQ=255)
                                                                                                                aGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATCGACGGTGGCGAAAACG‑CATTTTAGGCAGCGATAGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGc                     >  2:761089/1‑143 (MQ=255)
                                                                                                                aGCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGGTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGc                     >  1:407279/1‑143 (MQ=255)
                                                                                                                 gCCATGCTAACTCGTCCAAACAATTC‑AAAAGCAGAGGGATGGTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCg                    <  2:852535/143‑1 (MQ=255)
                                                                                                                  cgaTGTTAACTCGGCCAAACAATTC‑AAAAGGAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCgg                   <  2:877049/141‑1 (MQ=255)
                                                                                                                  ccATGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGCGAGCgg                   >  2:611621/1‑143 (MQ=255)
                                                                                                                   cATGCTATGTCGTCCAGACAACTC‑ATAAGCAGATGGATGTTTGTGCTCACGTTTGCCAGGAGGTGGCCGGTGGCGAAAAGGCCATAATTGGC‑GTGATGGGTGAGGGTCATATGGTGGAAGGCAATCAGAGCTCCGAGAGCggg                  <  2:281756/143‑1 (MQ=255)
                                                                                                                    aTGCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCgggg                 <  1:562257/143‑1 (MQ=255)
                                                                                                                      gCTAACTCGTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTACTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAg               >  1:644753/1‑143 (MQ=255)
                                                                                                                         agcTCGGCCAAACAATTC‑GAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCg            <  2:249317/141‑1 (MQ=255)
                                                                                                                              gTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGc       <  1:1050688/143‑1 (MQ=255)
                                                                                                                              gTCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGACCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCGCGAGAGCGGGGAGCCGCTGGc       >  2:437312/1‑143 (MQ=255)
                                                                                                                               tCCAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGcc      >  2:1019164/1‑143 (MQ=255)
                                                                                                                                ccAAACAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGAGGGTGGAAAGCCATCAGGTGGCCGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCGGGCCt     >  2:617603/1‑143 (MQ=255)
                                                                                                                                   aaCAATTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCAGTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGTCCTACg  >  2:859073/1‑143 (MQ=255)
                                                                                                                                      aaTTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGaa                                          >  2:304405/1‑100 (MQ=255)
                                                                                                                                      aaTTC‑AAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGaa                                          <  1:304405/100‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                        
CCATATCATTCTGCGCGGCGGTAAAGAGCCTAACTACAGCGCGAAGCACGTTGCTGAAGTGAAAGAAGGGCTGAACAAAGCAGGCCTGCCAGCACAGGTGATGATCGATTTCAGCCATGCTAACTCGTCCAAACAATTCAAAAAGCAGATGGATGTTTGTGCTGACGTTTGCCAGCAGATTGCCGGTGGCGAAAAGGCCATTATTGGC‑GTGATGGTGGAAAGCCATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACG  >  NC_000913/786319‑786593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A