Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
29 |
281.6 |
8141248 |
99.5% |
8100541 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
BS168_reference_genome |
1,317,152 |
+GT |
intergenic (+23/+5) |
phrA → / ← yjpA |
secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | BS168_reference_genome | 1,317,152 | 1 | . | G | 92.0%
| 530.3
/ 44.7
| 151 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (1/11); new base G (45/92); total (48/103) |
| Fisher's exact test for biased strand distribution p-value = 1.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.94e-01 |
| * | BS168_reference_genome | 1,317,152 | 2 | . | T | 90.7%
| 489.8
/ 45.9
| 151 | intergenic (+23/+5) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (3/11); new base T (45/91); total (48/103) |
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.84e-01 |
Only 100 of 169 total aligned reads displayed.
TAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑C‑TT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGT > BS168_reference_genome/1317003‑1317287
||
tAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑g < 1:2235633/150‑1 (MQ=255)
aaaTGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑gg < 2:738341/150‑2 (MQ=255)
agtGGATGCCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggt < 2:3377021/148‑3 (MQ=255)
aTGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtc > 1:2073154/1‑147 (MQ=255)
tGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtct < 1:2776490/150‑5 (MQ=255)
ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtctt > 1:83874/1‑145 (MQ=255)
ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtctt > 1:4033407/1‑145 (MQ=255)
ggATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑gg‑ggtctt < 2:2943754/150‑6 (MQ=255)
gATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTCCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑t < 2:2641547/150‑1 (MQ=255)
aTGTCAGGTTTGTTGGTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑tt < 1:1105324/150‑2 (MQ=255)
aTGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑tt < 1:3331822/150‑2 (MQ=255)
tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑ttt < 1:3506180/150‑3 (MQ=255)
tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑ttt < 1:2352799/150‑3 (MQ=255)
tGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTCCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑tc‑tt‑ttt < 2:1932933/150‑3 (MQ=255)
gTCAGGTTTGTTGCTCGGTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGGTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑TC‑tt‑t‑ttt < 2:2151896/150‑1 (MQ=255)
aGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑G‑TC‑tt‑t‑tttatt < 2:3125981/150‑4 (MQ=255)
ttgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATttctt > 1:1129233/1‑150 (MQ=255)
tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATttcttc < 1:4007455/150‑1 (MQ=255)
ttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAg < 2:2710483/150‑1 (MQ=255)
tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GGCGT‑C‑TT‑TTGT‑ATTTCTTCAGc > 1:2354077/1‑150 (MQ=255)
tgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCAAGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGc < 2:175841/150‑1 (MQ=255)
cTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCtt > 2:2830834/1‑150 (MQ=255)
tCGTTGCGGTCGGGTCCAGCTTTGCCCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAATAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTc < 2:1732929/150‑1 (MQ=255)
ttGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCAt < 1:1017868/150‑1 (MQ=255)
tGCGGTCGGGTTCAGCTTTCCCCAGGTGATGGTCCATGCAGGTGAAACAGCAAACCCAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCAtt < 2:2856938/150‑1 (MQ=255)
tGCGGTCGGGTTCAGCTTTACTCAGGTGATGGCTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCAtt < 2:2069406/150‑1 (MQ=255)
tGCGGTCGGGTCCAGCTGTACTCAGGTGATGGTCCATCCAGGTGAAACAGCAACCACAGAAGGGAGAACATTTCATATTGCGGCACGCAATCAAACAGGATGCATAAAGAAAGACCCTGA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTACCttt < 2:913755/150‑1 (MQ=255)
cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACGGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCt < 2:2188099/150‑1 (MQ=255)
cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCt > 1:1844459/1‑150 (MQ=255)
tCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCtttt < 1:1216050/150‑1 (MQ=255)
ttCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt > 1:1835220/1‑150 (MQ=255)
tccAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt < 1:2316258/148‑1 (MQ=255)
gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTCTCGTCAGc > 2:3288677/1‑150 (MQ=255)
gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:511359/150‑1 (MQ=255)
gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:2812381/150‑1 (MQ=255)
gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 2:1770398/150‑1 (MQ=255)
cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCagaa < 2:3561810/150‑1 (MQ=255)
gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 2:3959432/150‑1 (MQ=255)
gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc < 2:2367676/150‑1 (MQ=255)
tGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCa < 1:3727611/150‑1 (MQ=255)
gATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGGAATCAAACATTATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc < 1:1951955/150‑1 (MQ=255)
aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACt < 2:1232629/150‑1 (MQ=255)
ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:1568662/1‑150 (MQ=255)
ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg < 2:243157/150‑1 (MQ=255)
cATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccac < 2:1649090/150‑1 (MQ=255)
cATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccac < 1:3815232/150‑1 (MQ=255)
aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 1:434544/1‑150 (MQ=255)
aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTC‑TTCTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 2:2917588/1‑150 (MQ=255)
gCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 1:3185079/150‑1 (MQ=255)
aGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGCg > 2:3693307/1‑150 (MQ=255)
ggTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGccg > 1:1898401/1‑148 (MQ=255)
tGAAACAGCAAACCCAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAt < 2:2952332/150‑1 (MQ=255)
aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATcc < 2:1325238/150‑1 (MQ=255)
aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 2:848395/1‑150 (MQ=255)
aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 2:981731/1‑150 (MQ=255)
gCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg < 2:3903110/150‑1 (MQ=255)
aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAACAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑TTTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGc < 2:4070428/150‑1 (MQ=255)
aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:1559150/150‑1 (MQ=255)
aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 1:3505028/150‑1 (MQ=255)
acacAGAAGGGAAAACATTTCATTTTCCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCg < 1:2472316/150‑1 (MQ=255)
acaGAAGGGAAAACATTTCATATTGCGGCCCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 2:1747239/150‑1 (MQ=255)
caGAAGGGAAAACATCTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt < 1:2416502/150‑1 (MQ=255)
gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc < 2:2329173/144‑1 (MQ=255)
aaGGGAAACCATTCCGTGTTGCGGCACCCAATCAAACATGATGCATAAAGAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑GTTTCTCCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:2156272/150‑1 (MQ=255)
aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 1:2830834/150‑1 (MQ=255)
aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:479231/150‑1 (MQ=255)
aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:2589632/150‑1 (MQ=255)
aCATTTCATATTGCGGCACGCAATCAAACATGATCCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc < 2:591430/150‑1 (MQ=255)
aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt < 1:2664000/150‑1 (MQ=255)
tttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCCTGGCCGATTTCCGCTGCctcctc > 1:1400937/1‑150 (MQ=255)
ttCATATTGCGGCACGCAATCAAACATGATCCATAAAAAAAGACCCTTA‑‑GG‑GGCCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTcc < 2:3439907/150‑1 (MQ=255)
cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 1:2337975/150‑1 (MQ=255)
cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg > 2:1142579/1‑150 (MQ=255)
atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTgg > 2:2324155/1‑149 (MQ=255)
atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa < 1:2480412/150‑1 (MQ=255)
gCGGCACGCATTCAACCATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATc < 2:3515341/150‑1 (MQ=255)
cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCt > 1:9079/1‑150 (MQ=255)
gCACGCAATCAAACATGATGCATAAAAGAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTGTATCGTCAGCTCAGAAGATCCCCTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGc < 1:3744688/150‑1 (MQ=255)
gCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCCGTGAATCTGc > 2:3850935/1‑150 (MQ=255)
cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTc < 1:2531159/150‑1 (MQ=255)
gCAACCAACCATGATGCATAAGAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 2:2635511/150‑1 (MQ=255)
cAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 2:1613151/1‑150 (MQ=255)
aaTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 1:2715208/1‑150 (MQ=255)
aTCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGGTCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 2:202234/1‑150 (MQ=255)
cAAACAGGATGCAAAAAAAAACTGCCTTAGGGG‑G‑‑T‑TT‑TT‑TCATTTCTTCAGCTTCCATTTTTGTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCATCGATGAc < 1:1697572/150‑1 (MQ=255)
aaaCATGATGCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 2:2526126/150‑1 (MQ=255)
aaaCATGATGCAAAAAAAAAGACCCATA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 1:988152/150‑1 (MQ=255)
atgatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACg < 1:1587270/150‑1 (MQ=255)
gatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGGTTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt > 1:1866354/1‑150 (MQ=255)
gatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt < 1:1046689/150‑1 (MQ=255)
gatgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt > 1:3577720/1‑150 (MQ=255)
gaagCATAAAACAAGACCCTTA‑‑GG‑GGTC‑TT‑TT‑TAATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt < 2:1530493/147‑1 (MQ=255)
tgCATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGGTGCCATACGCTcc > 2:3778928/1‑150 (MQ=255)
cATAAAAAAAGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGc > 2:2227193/1‑150 (MQ=255)
aaaaaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGGAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATTCGCTCCGCCtgt > 1:63216/1‑150 (MQ=255)
aaaaaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCCCCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGCGGATCTGCTTCGATGGCATACGCTCCGCCtgt > 2:658073/1‑150 (MQ=255)
aaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:434544/150‑1 (MQ=255)
aaaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:1187307/150‑1 (MQ=255)
aaGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGACAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCg < 1:3365315/150‑1 (MQ=255)
aGACCCTTA‑‑GG‑GGTCTTT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGGCATACGCTCCGCCTGTGGCGt > 1:2258201/1‑150 (MQ=255)
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TAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑GG‑G‑‑C‑TT‑TT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGT > BS168_reference_genome/1317003‑1317287
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
