Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F66 I1 R1
|
35 |
99.0 |
4347662 |
95.6% |
4156364 |
127.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
BS168_reference_genome |
1,695,562 |
(A)7→8 |
coding (309/627 nt) |
fliH → |
flagellar export apparatus subunit of cytoplasmic ATPase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | BS168_reference_genome | 1,695,555 | 1 | . | A | 94.7%
| 529.5
/ 17.9
| 152 | coding (302/627 nt) | fliH | flagellar export apparatus subunit of cytoplasmic ATPase |
| Reads supporting (aligned to +/- strand): ref base . (4/4); new base A (77/67); total (81/71) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 159 total aligned reads displayed.
GGCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAAT > BS168_reference_genome/1695419‑1695684
|
ggCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑a > 4:384329/1‑138 (MQ=255)
ggCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑a > 6:419010/1‑138 (MQ=255)
ggCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑a > 5:3138/1‑138 (MQ=255)
cAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑aaa > 6:145442/1‑138 (MQ=255)
gCAATGAAACAGTATGCCGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTgg < 3:348371/139‑1 (MQ=255)
tGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGgcag > 5:12964/1‑138 (MQ=255)
tATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCt > 7:432774/1‑139 (MQ=255)
tATGCAGAACTGATCGGCCAAGCAAACAGTAAAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTcg > 8:100566/1‑138 (MQ=255)
tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtga > 3:451062/1‑139 (MQ=255)
tGCAGAACTGATCGCCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGAA‑AAAAAAAGTTAGGCAGCAAAAGTCtca > 5:476060/1‑137 (MQ=255)
cAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtgat < 3:505402/138‑1 (MQ=255)
cAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtgat < 5:209378/138‑1 (MQ=255)
aGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCtgatga > 2:109620/1‑139 (MQ=255)
cTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATa > 7:151259/1‑137 (MQ=255)
tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGACCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag > 8:409883/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 1:154753/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 7:289152/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 8:172686/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 8:174715/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 8:32340/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 3:162429/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAagag > 1:4647/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTCGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTc < 4:55557/126‑1 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTCGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTc > 3:55557/1‑126 (MQ=255)
cGGCCAAGCAAACAGTCTCACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTTCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGc < 8:300328/139‑1 (MQ=255)
ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCt < 6:254386/139‑1 (MQ=255)
ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCt < 1:109620/139‑1 (MQ=255)
ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCttt > 6:526519/1‑139 (MQ=255)
aGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtcct < 5:145442/139‑1 (MQ=255)
aGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtcct < 6:269568/139‑1 (MQ=255)
aaaCAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct < 8:432774/139‑1 (MQ=255)
aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGCGGCTTTCCTCCTGCtt > 6:223028/1‑139 (MQ=255)
aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtc > 4:241142/1‑130 (MQ=255)
aaCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct < 6:12433/130‑1 (MQ=255)
aCTGAAATTTCCATAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGATGAAATCGTTGATCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCTATAGTCTTATGATAAAGAGGCTTTCCTTCTGCTTGTacaac < 4:527129/139‑1 (MQ=255)
aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaa < 2:4647/139‑1 (MQ=255)
aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaa < 2:109239/139‑1 (MQ=255)
cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGGTTTCCTCCTGCTTGTacaac < 7:457989/139‑1 (MQ=255)
cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac < 6:3138/139‑1 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct > 4:126846/1‑125 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct < 3:126846/125‑1 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc > 3:272578/1‑127 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc < 4:272578/127‑1 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAgg > 7:70728/1‑139 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAgg > 8:276791/1‑139 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAgg > 6:289000/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCt > 7:137474/1‑100 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAaga < 6:406799/111‑1 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac < 1:220427/134‑1 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGtt > 2:367447/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 1:212117/1‑138 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 7:51632/1‑138 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 2:406081/1‑138 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTAGTACAACAGGTta > 3:527129/1‑139 (MQ=255)
cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac > 4:319313/1‑129 (MQ=255)
cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc > 5:39088/1‑139 (MQ=255)
gAAAAGCTGGGGAGGACAAGCATGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg < 6:314873/139‑1 (MQ=255)
gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGt > 8:368065/1‑138 (MQ=255)
gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg < 3:57861/139‑1 (MQ=255)
gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg < 3:191360/139‑1 (MQ=255)
cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 5:516468/1‑138 (MQ=255)
cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 6:17034/1‑138 (MQ=255)
cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 7:174715/139‑1 (MQ=255)
gTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAg > 7:121435/1‑139 (MQ=255)
gAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc > 8:57166/1‑107 (MQ=255)
gAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc < 7:57166/107‑1 (MQ=255)
cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg > 8:29982/1‑123 (MQ=255)
cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGa > 6:462595/1‑139 (MQ=255)
cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGa < 5:247955/139‑1 (MQ=255)
aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 3:260564/128‑1 (MQ=255)
aGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACg < 5:289000/139‑1 (MQ=255)
gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa > 3:237556/1‑126 (MQ=255)
gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 4:237556/126‑1 (MQ=255)
gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGa > 5:66907/1‑139 (MQ=255)
aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata < 3:356921/138‑1 (MQ=255)
aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata < 5:419010/138‑1 (MQ=255)
cGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt < 8:485584/139‑1 (MQ=255)
cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg < 4:98662/109‑1 (MQ=255)
cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 8:314665/1‑114 (MQ=255)
cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg < 7:314665/114‑1 (MQ=255)
tGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGt < 1:367447/139‑1 (MQ=255)
aagaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg < 5:257756/139‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGATGTGAAGGAATATGACGATATATCAATTTATGTTGa > 1:66520/1‑139 (MQ=255)
gtaaTCGTTGAGCTTGCCGTTGCCCTAT‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGTCGATATATCAATTTATGTTGAt < 5:100772/137‑1 (MQ=255)
gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 2:212117/139‑1 (MQ=255)
gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 6:66907/139‑1 (MQ=255)
gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 2:154753/139‑1 (MQ=255)
gaaATCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTATGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 1:60845/139‑1 (MQ=255)
aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag < 2:348260/62‑1 (MQ=255)
aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag > 1:348260/1‑62 (MQ=255)
aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCa > 3:189391/1‑139 (MQ=255)
aTCGTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATAGCAATTTATGTTGATCCa > 2:157678/1‑139 (MQ=255)
gTTGATCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 5:230057/139‑1 (MQ=255)
gTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 7:307659/139‑1 (MQ=255)
gTTGAGCTTGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 6:516468/139‑1 (MQ=255)
gCTTGCCGTTGCACTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTa < 8:121435/139‑1 (MQ=255)
tGCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGTTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTAt > 5:387906/1‑137 (MQ=255)
gCCGTTGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa < 2:482952/84‑1 (MQ=255)
tGCCCTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAAt > 8:93449/1‑139 (MQ=255)
cccTAG‑CAAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt < 6:226905/107‑1 (MQ=255)
|
GGCAAAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAG‑C‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAAT > BS168_reference_genome/1695419‑1695684
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
