Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F34 I1 R1
|
7 |
72.1 |
2826286 |
86.1% |
2433432 |
138.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009273 |
3,688,377 |
(GACGCG)2→1 |
coding (215‑220/2619 nt) |
bcsA ← |
cellulose synthase, catalytic subunit |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009273 |
3688368 |
3688373 |
6 |
90 [0] |
[0] 91 |
bcsA |
cellulose synthase, catalytic subunit |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009273 |
3688374 = | 0 (0.000) | 79 (1.180) |
61/256 |
0.1 |
100% |
coding (223/2619 nt) |
bcsA |
cellulose synthase, catalytic subunit |
| ? | CP009273 |
= 3688367 |
0 (0.000) | coding (230/2619 nt) |
bcsA |
cellulose synthase, catalytic subunit |
GATK/CNVnator alignment
N/A
