Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F66 I1 R1	7	67.5	2335286	98.9%	2309597	135.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP009273	4,177,142	A→G	D622G (GAC→GGC)	rpoC →	RNA polymerase, beta prime subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,177,142	0	A	G	100.0%	321.1 / NA	89	D622G (GAC→GGC)	rpoC	RNA polymerase, beta prime subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (41/48); total (41/48)

TGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGACCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGAAATTCAGGAGCA  >  CP009273/4177005‑4177277

tGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGcc                                                                                                                                       >  2:233586/1‑140 (MQ=255)

tGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGcc                                                                                                                                       >  2:329740/1‑140 (MQ=255)

tGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGcc                                                                                                                                       >  2:443918/1‑140 (MQ=255)

  ccATTCTGTGGATGATTGTACCGAACGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAg                                                                                                                                     <  1:155585/140‑1 (MQ=255)

  ccATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAg                                                                                                                                     <  1:1041613/140‑1 (MQ=255)

   cagtCTGTGGATGAGGGTACCGACAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  1:664370/137‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  2:274917/140‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  1:801874/140‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  2:81108/140‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  2:1004565/140‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  1:533734/140‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  1:235507/140‑1 (MQ=255)

   cATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGa                                                                                                                                    <  2:935159/140‑1 (MQ=255)

     ttCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATc                                                                                                                                  <  1:228474/140‑1 (MQ=255)

     ttCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATc                                                                                                                                  <  2:352829/140‑1 (MQ=255)

               gatTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCg                                                                                                                        >  1:851640/1‑140 (MQ=255)

                 ttGTACCTAAATGTCTTAATTACTCCATCGTCAACAAGGCGCTTGTTAAAAAAGCAATATCCAAAATGCTGAACACCTGCTACAGCATTCTCTGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCgga                                                                                                                      <  1:207158/140‑2 (MQ=255)

                 ttGTACCGAACGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  2:1086679/140‑1 (MQ=255)

                 ttGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCTCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  1:606425/140‑1 (MQ=255)

                 ttGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  2:58072/140‑1 (MQ=255)

                 ttGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  1:954838/140‑1 (MQ=255)

                 ttGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  2:912062/140‑1 (MQ=255)

                 atGTACCGAAAGGTCTGCCTTACACCCTCGTCAACCACGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  1:831795/139‑1 (MQ=255)

                  tGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCt                                                                                                                     >  1:692705/1‑140 (MQ=255)

                   gTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCtt                                                                                                                    <  1:712399/140‑1 (MQ=255)

                   gTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCtt                                                                                                                    <  1:978550/140‑1 (MQ=255)

                   gTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCtt                                                                                                                    <  1:95648/140‑1 (MQ=255)

                    tACCGCAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAATAACGCAAGCTCCAAATTGCTGAACACCTGCGACCGCATTCTCGGTCTGAAACCGACCGGTATTTTTGGGGGGCTGATCATGTGCACCGGCTTc                                                                                                                   >  2:986970/1‑140 (MQ=255)

                      ccGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGc                                                                                                                 >  2:31700/1‑140 (MQ=255)

                      ccGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGc                                                                                                                 >  2:1038882/1‑140 (MQ=255)

                      ccGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGc                                                                                                                 <  1:969264/140‑1 (MQ=255)

                      ccGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACAACGGCTTCGc                                                                                                                 >  2:756960/1‑140 (MQ=255)

                         aaaGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTCAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTa                                                                                                              >  2:476851/1‑140 (MQ=255)

                              tCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAg                                                                                                         >  1:630530/1‑140 (MQ=255)

                              tCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAg                                                                                                         >  2:222048/1‑140 (MQ=255)

                              tCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAg                                                                                                         >  2:1135085/1‑140 (MQ=255)

                              tCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCGCCAAAATGGGGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTAGTTTTGCGGGCCCGATCATGTACACCGGCGTCGCCGATGccg                                                                                                         >  1:180321/1‑138 (MQ=255)

                                   cTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGt                                                                                                    <  1:813263/140‑1 (MQ=255)

                                   cTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGt                                                                                                    <  1:541489/140‑1 (MQ=255)

                                        tCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCa                                                                                                          <  1:452383/129‑1 (MQ=255)

                                        tCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCa                                                                                                          >  2:452383/1‑129 (MQ=255)

                                        tCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTgg                                                                                               <  2:851640/140‑1 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  1:987691/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  2:912100/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           <  2:692705/140‑1 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  2:446482/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  2:847734/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  2:533292/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  1:1158320/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  2:839178/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  1:778592/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTAAACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  1:517338/1‑140 (MQ=255)

                                            tCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTAAACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCa                                                                                           >  1:137686/1‑140 (MQ=255)

                                                 aaCCAGGCGCTGGGTAACAAAGCAATCTCCAAACTGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGTCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGt                                                                                      <  2:615763/140‑1 (MQ=255)

                                                 aaCCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGt                                                                                      <  1:443918/140‑1 (MQ=255)

                                                    cAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTAAACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTgg                                                                                   <  2:137686/140‑1 (MQ=255)

                                                    cAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTAAACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTgg                                                                                   <  2:517338/140‑1 (MQ=255)

                                                           tGGTTAAAAAAGCAAACTCCAAAATGCTGAACACCTGATACCGAATTCTCGGTCTGAAACCGACCTTTATTTTTTCGGGCCAGATCATTTACACCGGCTTCGCCTATGCAGCGCGTTCTTGTGCATCTGTTGGTATCGAt                                                                            <  1:756960/140‑1 (MQ=255)

                                                           tGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGAt                                                                            <  1:1038882/140‑1 (MQ=255)

                                                           tGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGAt                                                                            <  1:31700/140‑1 (MQ=255)

                                                                         aTCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATccc                                                              >  1:672261/1‑140 (MQ=255)

                                                                                        aaCACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGa                                               >  2:71279/1‑140 (MQ=255)

                                                                                        aaCACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGa                                               >  2:658361/1‑140 (MQ=255)

                                                                                             cTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAatca                                          >  2:17786/1‑140 (MQ=255)

                                                                                             cTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAatca                                          >  1:280815/1‑140 (MQ=255)

                                                                                               gCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAatcatc                                        >  1:741126/1‑140 (MQ=255)

                                                                                               gCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAatcatc                                        >  1:740868/1‑140 (MQ=255)

                                                                                                  aCCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTcc                                     >  1:2193/1‑140 (MQ=255)

                                                                                                       aTTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      >  1:871997/1‑54 (MQ=255)

                                                                                                       aTTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGc                                                                                                                      <  2:871997/54‑1 (MQ=255)

                                                                                                       aTTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGgc                                <  2:1140277/140‑1 (MQ=255)

                                                                                                       aTTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGgc                                <  2:530455/140‑1 (MQ=255)

                                                                                                       aTTCTCGGTCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGgc                                <  2:584034/140‑1 (MQ=255)

                                                                                                       aTTCTCGGTCTGAAACCGACCGTTATGGTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGgc                                >  1:378631/1‑140 (MQ=255)

                                                                                                               tCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAgc                                                                                                        >  2:41798/1‑60 (MQ=255)

                                                                                                               tCTGAAACCGACCGTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAgc                                                                                                        <  1:41798/60‑1 (MQ=255)

                                                                                                                        gaccgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTg               <  2:987691/140‑1 (MQ=255)

                                                                                                                        gaccgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTg               <  2:1158320/140‑1 (MQ=255)

                                                                                                                         accgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGa              <  1:329740/140‑1 (MQ=255)

                                                                                                                         accgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGa              >  2:479688/1‑140 (MQ=255)

                                                                                                                         accgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGa              <  1:832227/140‑1 (MQ=255)

                                                                                                                         accgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGa              >  2:872679/1‑140 (MQ=255)

                                                                                                                         accgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGa              >  1:268468/1‑140 (MQ=255)

                                                                                                                         accgTTATTTTTGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGa              <  1:233586/140‑1 (MQ=255)

                                                                                                                                   ttGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGAAATTCAGGAg    >  1:668709/1‑140 (MQ=255)

                                                                                                                                   ttGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGAAATTCAGGAg    <  2:1081360/140‑1 (MQ=255)

                                                                                                                                   ttGCGGGCCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGAAATTCAGGAg    <  1:1015603/140‑1 (MQ=255)

                                                                                                                                   ttGCGGGCCAGATCATGTACACCGGCTTCGCCGATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGAAATTCAGGAg    <  1:476851/140‑1 (MQ=255)

                                                                                                                                     gCGGGCCAGAGCCTGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGGTGACATGGTCATCCCGGCGAAGACACACGAACTCATCTCGGAGGCAGAAGCAGACGTTGCTGTCAGTCAGGAGCa  >  2:149669/1‑140 (MQ=255)

TGCCATTCTGTGGATGATTGTACCGAAAGGTCTGCCTTACTCCATCGTCAACCAGGCGCTGGGTAAAAAAGCAATCTCCAAAATGCTGAACACCTGCTACCGCATTCTCGGTCTGAAACCGACCGTTATTTTTGCGGACCAGATCATGTACACCGGCTTCGCCTATGCAGCGCGTTCTGGTGCATCTGTTGGTATCGATGACATGGTCATCCCGGAGAAGAAACACGAAATCATCTCCGAGGCAGAAGCAGAAGTTGCTGAAATTCAGGAGCA  >  CP009273/4177005‑4177277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A