Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
92 |
50.6 |
2362856 |
94.3% |
2228173 |
111.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,228,728 |
C→T |
pseudogene (31/150 nt) |
mdtQ ← |
pseudogene, putative channel/filament proteins |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,228,728 | 0 | C | T | 100.0%
| 175.8
/ NA
| 51 | pseudogene (31/150 nt) | mdtQ | pseudogene, putative channel/filament proteins |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (22/29); total (22/29) |
CATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGCGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGAC > NC_000913/2228606‑2228857
|
cATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAg > 2:28036/1‑139 (MQ=255)
cgacGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACTCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGa > 1:682423/4‑139 (MQ=255)
gggTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATg < 1:784037/139‑1 (MQ=255)
aaTGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATggggg > 1:807843/1‑139 (MQ=255)
ggTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACA‑CCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGaataat > 2:528143/1‑139 (MQ=255)
tgCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGaaa > 2:523541/1‑139 (MQ=255)
cGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg < 2:330404/126‑1 (MQ=255)
cGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg > 1:330404/1‑126 (MQ=255)
ggCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTgcg < 1:523541/139‑1 (MQ=255)
gCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTgcgc < 1:295729/139‑1 (MQ=255)
gCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTgcgc < 1:404997/139‑1 (MQ=255)
cGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGcgcg < 1:340814/139‑1 (MQ=255)
gTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATg < 2:80451/108‑1 (MQ=255)
gTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATg > 1:80451/1‑108 (MQ=255)
gTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCgg > 1:403912/1‑139 (MQ=255)
tttGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGga < 2:696248/139‑1 (MQ=255)
ggCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTAc > 1:1152456/1‑139 (MQ=255)
ttAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCgt < 1:499338/139‑1 (MQ=255)
ttAACGCCTGGC‑GGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCgtg > 2:176531/1‑139 (MQ=255)
cTGGC‑GGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCg < 1:176531/139‑1 (MQ=255)
tGGCGGGTTTCATGCATAGGCCCACGCCCGGCCAGCATCAGTAACAGCGGCAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTAGCg > 1:148528/1‑139 (MQ=255)
cGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGata < 2:403912/139‑1 (MQ=255)
ggTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGatata < 1:403737/139‑1 (MQ=255)
gTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGatatat > 1:719343/1‑139 (MQ=255)
tGCATAGGCGCACA‑CCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAg < 1:528143/139‑1 (MQ=255)
ggCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcg < 2:682423/139‑1 (MQ=255)
gcgcACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg > 2:671221/1‑84 (MQ=255)
gcgcACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg < 1:671221/84‑1 (MQ=255)
cgcACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcgcg < 2:376353/139‑1 (MQ=255)
cgcACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcgcg < 1:252839/139‑1 (MQ=255)
gcACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGt < 2:1152456/139‑1 (MQ=255)
cacaCCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTAcc > 2:375459/1‑107 (MQ=255)
cacaCCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTAcc < 1:375459/107‑1 (MQ=255)
acacCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTgg < 1:883907/139‑1 (MQ=255)
cacCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAg > 2:926787/1‑89 (MQ=255)
cacCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAg < 1:926787/89‑1 (MQ=255)
ccGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATgg > 1:91646/1‑64 (MQ=255)
ccGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATgg < 2:91646/64‑1 (MQ=255)
cATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg > 1:1156849/1‑68 (MQ=255)
cATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg < 2:1156849/68‑1 (MQ=255)
cAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGc < 2:463291/139‑1 (MQ=255)
cAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGc < 2:807843/139‑1 (MQ=255)
tAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcgcg > 1:175343/1‑118 (MQ=255)
tAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcgcg < 2:175343/118‑1 (MQ=255)
aGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGt > 2:282884/1‑115 (MQ=255)
aGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGt < 1:282884/115‑1 (MQ=255)
cGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg < 2:441106/56‑1 (MQ=255)
cGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg > 1:441106/1‑56 (MQ=255)
gAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTgcgc > 2:1111851/1‑70 (MQ=255)
gAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTgcgc < 1:1111851/70‑1 (MQ=255)
gAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGAc > 2:452610/1‑139 (MQ=255)
|
CATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGCGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGAC > NC_000913/2228606‑2228857
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
