Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
92 |
50.6 |
2362856 |
94.3% |
2228173 |
111.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,865,112 |
Δ1 bp |
coding (1162/1662 nt) |
yidE ← |
putative transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,865,110 | 0 | G | . | 100.0%
| 136.4
/ NA
| 34 | coding (1164/1662 nt) | yidE | putative transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (11/23); total (11/23) |
GCGAGGTTGGCGCTTGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCCCACCAGATT > NC_000913/3864976‑3865244
|
gcgAGGTTGGCGCTTGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCCGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACggaat > 1:504344/1‑136 (MQ=255)
cgAGGTTGGCGCTTGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCTGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACggaata > 1:198613/1‑135 (MQ=255)
cgAGGTTGGCGCTTGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACggaata > 2:1092840/1‑135 (MQ=255)
tGGCGCTTGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCt < 1:341466/139‑1 (MQ=255)
ggCGCTTGGCGGCATAAACCAGTACAGCGTGCCGCTACTGCCGATACGCTCGAGGATCAACTCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGCATCCTGGCACAAAGAC‑GGAATAGAACCTa > 1:761555/1‑139 (MQ=255)
ttGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAAt < 2:1157770/139‑1 (MQ=255)
ccAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGa < 2:223398/139‑1 (MQ=255)
cAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCaa < 2:291697/139‑1 (MQ=255)
cgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACggaa < 1:1080114/98‑3 (MQ=255)
cgatactgccgatacGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACggaa > 2:1080114/1‑96 (MQ=255)
actgccgatacGCCCGAGGATCAACTCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGGCTAGCCCGATGCCAATAAACACTGgca < 2:761555/139‑1 (MQ=255)
acGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCt < 2:836030/105‑1 (MQ=255)
acGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGaa > 2:278876/1‑139 (MQ=255)
acGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCACAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCt > 1:836030/1‑105 (MQ=255)
aaCGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGttt < 2:852646/139‑1 (MQ=255)
aCGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACaa > 2:390304/1‑84 (MQ=255)
aCGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACaa < 1:390304/84‑1 (MQ=255)
aaTCAGCGGTCCGCCTGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTgcg < 2:198613/139‑1 (MQ=255)
aaTCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTgcg < 1:18601/139‑1 (MQ=255)
tCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCa < 1:278876/139‑1 (MQ=255)
tCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCa < 1:1092840/139‑1 (MQ=255)
gCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTc > 2:137795/1‑139 (MQ=255)
ggTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTccc < 2:1141816/139‑1 (MQ=255)
gTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTcccc < 1:102022/139‑1 (MQ=255)
tCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATg > 1:803751/1‑84 (MQ=255)
tCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATg < 2:803751/84‑1 (MQ=255)
cgcccgcgAGCCCCAGTTTCAACGCGGCCGGGAATCCTGCCACAAAGAC‑GGAATAGAACCTAACATTACGCCTAGCCCGa < 2:717317/80‑1 (MQ=255)
cgcccgccAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGa > 1:717317/1‑80 (MQ=255)
cgcccgccAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAg > 1:456698/1‑138 (MQ=255)
cgcccgccAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAg < 2:456698/138‑1 (MQ=255)
gCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCa < 1:1038582/139‑1 (MQ=255)
tttCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCAt < 2:306485/139‑1 (MQ=255)
tttCAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCAt > 1:886292/1‑139 (MQ=255)
cAACGCGGCCGGGAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCaa > 2:579322/1‑139 (MQ=255)
ggAATCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCAGCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCTTCAATTGcggacgga < 1:788796/139‑1 (MQ=255)
aaTCCTGGCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGgacggacg < 1:579322/139‑1 (MQ=255)
tagCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCcca < 2:504344/137‑1 (MQ=255)
ggCACAAAGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGTCATCAATTGCGGACGGACGCCccac < 2:886292/139‑1 (MQ=255)
aaGAC‑GGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCCCACCAGAtt > 2:617147/1‑139 (MQ=255)
|
GCGAGGTTGGCGCTTGGCGGCATAAACCAGTACAGCTTGCCGATACTGCCGATACGCCCGAGGATCAACGCCATAATCAGCGGTCCGCCCGCCAGCCCCAGTTTCAACGCGGCCGGGAATCCTGGCACAAAGACGGGAATAGAACCTAACAATACGCCTAGCCCGATGCCAATAAACACTGGCAGCATCTGAACCTGTTGCAGTTTTTGCTGCGCATTCCCCAGCACATTGGCAACGGCATCAATTGCGGACGGACGCCCCACCAGATT > NC_000913/3864976‑3865244
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
