Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
83 |
73.5 |
3575638 |
92.3% |
3300313 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,318,211 |
A→G |
L185P (CTC→CCC) |
phnK ← |
carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,318,211 | 0 | A | G | 100.0%
| 200.8
/ NA
| 53 | L185P (CTC→CCC) | phnK | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (30/23); total (30/23) |
ACCCACTCTCCACCACTTGCCCCTGCTTCATCACCAGCAAACGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGAGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCGGCAGGT > NC_000913/4318080‑4318343
|
aCCCACTCTCCACCACTTGCCCCTGCTTCATCACCAGCAAACGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCg > 2:1717554/1‑139 (MQ=255)
ttGCCCCTGCTTCATCACCAGCAAACGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGAcaca < 2:1294889/139‑1 (MQ=255)
gCCCCTGCTTCATCACCAGCAAACGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATc > 1:626452/1‑139 (MQ=255)
cTTCATCACCAGCAAACGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCccg > 1:1359434/1‑139 (MQ=255)
aaaCGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTcgt < 1:1717554/139‑3 (MQ=255)
tCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCa > 2:1399763/1‑136 (MQ=255)
tCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCa < 1:1399763/136‑1 (MQ=255)
ccGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATaaa > 1:1476388/1‑139 (MQ=255)
gCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAaca < 1:1593358/139‑1 (MQ=255)
gCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCT‑‑‑CCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCAt > 2:852739/1‑127 (MQ=255)
gCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCT‑‑‑CCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCAt < 1:852739/127‑1 (MQ=255)
ggcgggcgACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAgg < 1:1074428/83‑1 (MQ=255)
ggcgggcgACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAgg > 2:1074428/1‑83 (MQ=255)
ggcgggcgACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGtt > 2:26539/1‑120 (MQ=255)
ggcgggcgACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGtt < 1:26539/120‑1 (MQ=255)
ggcgggcgACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCtt > 2:194642/1‑139 (MQ=255)
aCGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCg > 2:461512/1‑139 (MQ=255)
aaTCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAgg < 1:1518266/68‑1 (MQ=255)
aaTCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAgg > 2:1518266/1‑68 (MQ=255)
gggTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGc > 1:1233875/1‑67 (MQ=255)
gggTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGc < 2:1233875/67‑1 (MQ=255)
ggTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAacac < 1:482328/111‑1 (MQ=255)
ggTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAacac > 2:482328/1‑111 (MQ=255)
ggTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCgg > 2:714663/1‑139 (MQ=255)
aCAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCaa < 2:1446477/139‑1 (MQ=255)
aTCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGtctgtctcttata < 2:1359434/139‑13 (MQ=255)
accaccGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACA‑CAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCaa > 2:1778484/1‑139 (MQ=255)
ccGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACg < 1:461512/139‑1 (MQ=255)
ccGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACg < 2:626452/139‑1 (MQ=255)
gcgAGGTTCAGCTCCACCACCAGGTCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACgct > 2:298194/1‑139 (MQ=255)
gcgAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATg > 2:1756406/1‑107 (MQ=255)
gcgAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATg < 1:1756406/107‑1 (MQ=255)
cgAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAgg > 1:838733/1‑44 (MQ=255)
cgAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAgg < 2:838733/44‑1 (MQ=255)
cgAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACgctg > 2:537996/1‑139 (MQ=255)
aGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACgctgct > 2:1299748/1‑139 (MQ=255)
ttCAGCTCCACCACCAGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCa > 1:1166565/1‑139 (MQ=255)
ccaccaGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAaca < 1:930773/78‑1 (MQ=255)
ccaccaGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAaca > 2:930773/1‑78 (MQ=255)
ccaGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACg > 2:1461570/1‑118 (MQ=255)
ccaGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACg < 1:1461570/118‑1 (MQ=255)
ccaGGCCGCGCAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGaaaa > 2:143331/1‑139 (MQ=255)
cgcAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATAcc > 2:540063/1‑122 (MQ=255)
cgcAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATAcc < 1:540063/122‑1 (MQ=255)
cgcAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCg > 1:821841/1‑139 (MQ=255)
cgcAGCAGGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCACAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCg > 1:664709/1‑139 (MQ=255)
agcagGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCGGCa < 2:1476388/139‑1 (MQ=255)
agGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCt < 2:308953/97‑1 (MQ=255)
agGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCt > 1:308953/1‑97 (MQ=255)
agGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCGGCAGgt < 1:719900/139‑1 (MQ=255)
agGTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCGGCAGgt > 2:719900/1‑139 (MQ=255)
ggTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACg > 2:482373/1‑103 (MQ=255)
ggTCGGGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACg < 1:482373/103‑1 (MQ=255)
|
ACCCACTCTCCACCACTTGCCCCTGCTTCATCACCAGCAAACGGTCCGCCAGCAGGCGGGCGACGCCTAAATCATGGGTGACAATCACCACCGCGAGGTTCAGCTCCACCACCAGGCCGCGCAGCAGGTCGAGCAGGCGGGCCTGCACCGACACATCCAGCCCGCCGGTCGGTTCATCCATAAACACCAGCTTCGGATGCGTCACCAGGTTGCGGGCAATCTGCAAACGCTGCTGCATACCGCCGGAAAAGGTGGTCGGCAGGT > NC_000913/4318080‑4318343
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
