Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
63 |
64.8 |
2934156 |
93.7% |
2749304 |
111.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,449,947 |
T→C |
Y468C (TAT→TGT) |
tynA ← |
tyramine oxidase, copper‑requiring |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,449,947 | 0 | T | C | 100.0%
| 276.8
/ NA
| 72 | Y468C (TAT→TGT) | tynA | tyramine oxidase, copper‑requiring |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (35/37); total (35/37) |
ATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTGGTGAG > NC_000913/1449815‑1450081
|
aTGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTccg > 1:157113/1‑139 (MQ=255)
gTGCCGTTTTCCTGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt < 1:957341/139‑1 (MQ=255)
gTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt < 2:1161337/139‑1 (MQ=255)
gTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt < 1:145957/139‑1 (MQ=255)
gCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATaa < 2:1322326/139‑1 (MQ=255)
gCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATaa > 1:1330697/1‑139 (MQ=255)
ccGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATaa < 2:1172874/138‑1 (MQ=255)
ccGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATaa > 1:1172874/1‑138 (MQ=255)
ttttCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATaa < 2:821494/135‑1 (MQ=255)
ttttCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGtt > 2:1386210/1‑139 (MQ=255)
ttttCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCATACACTCCGGCCCGGCATaa > 1:821494/1‑135 (MQ=255)
tCCAGTCAATAATGTAGTCATATTTACCCACTGTACTGGTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTGGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGAt < 2:411740/139‑1 (MQ=255)
tCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCTATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGAt < 2:1187886/139‑1 (MQ=255)
gTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTcc < 1:1386210/139‑1 (MQ=255)
tAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCg < 1:849061/139‑1 (MQ=255)
ttACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCa > 1:1072203/1‑139 (MQ=255)
tACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTc < 2:789887/85‑1 (MQ=255)
tACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTc > 1:789887/1‑85 (MQ=255)
aCCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACg > 1:1466194/1‑139 (MQ=255)
cccACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGc > 2:70178/1‑139 (MQ=255)
gTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAgtgt > 1:935839/1‑139 (MQ=255)
tACTGATCCAGCGCAGCACTAACTCCCGGCGTTCGGTGCTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt > 2:981519/1‑87 (MQ=255)
tACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTa > 2:45266/1‑139 (MQ=255)
tACTGATCCAGCACACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt < 1:981519/87‑1 (MQ=255)
aTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCa < 2:279334/90‑1 (MQ=255)
aTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCa > 1:279334/1‑90 (MQ=255)
ccAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTc < 2:529225/69‑1 (MQ=255)
ccAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTc > 1:529225/1‑69 (MQ=255)
ccAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt < 1:792507/80‑1 (MQ=255)
ccAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCAt > 2:792507/1‑80 (MQ=255)
cAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACg < 2:16047/123‑1 (MQ=255)
cAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACg > 1:16047/1‑123 (MQ=255)
cAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCg > 1:955633/1‑138 (MQ=255)
cAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCg < 2:955633/138‑1 (MQ=255)
cAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGa > 2:687888/1‑139 (MQ=255)
cAGCGCACCACTAACTCCCGGCGGTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCGGCCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGa > 2:885412/1‑139 (MQ=255)
gcgcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTccggcc > 2:207296/1‑71 (MQ=255)
gcgcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTccggcc < 1:207296/71‑1 (MQ=255)
gcgcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATg > 1:1047495/1‑139 (MQ=255)
gcgcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATg > 1:807933/1‑139 (MQ=255)
cgcACCACTATCTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATCCCGCGATAGCTCGAGGGATCTCCATCGGCCCGCCAGTGTAGTCGGCGATgg < 2:1033366/139‑1 (MQ=255)
gcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGt < 2:1072203/139‑1 (MQ=255)
gcACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGt > 1:1084195/1‑139 (MQ=255)
accacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGttt < 2:1084195/139‑1 (MQ=255)
ccacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATa > 2:574008/1‑73 (MQ=255)
ccacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATa < 1:574008/73‑1 (MQ=255)
ccacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCa < 2:522130/114‑1 (MQ=255)
ccacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCa > 1:522130/1‑114 (MQ=255)
cacTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCa < 2:157113/139‑1 (MQ=255)
cTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCgg > 1:186900/1‑109 (MQ=255)
cTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCgg < 2:186900/109‑1 (MQ=255)
cccGGCGTTCGGTACTGACGTT‑GGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGc > 2:379327/1‑139 (MQ=255)
cGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCGTAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCa < 2:60745/139‑1 (MQ=255)
cGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATgg > 2:347043/1‑121 (MQ=255)
cGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATgg < 1:347043/121‑1 (MQ=255)
ttCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCg > 2:1219735/1‑139 (MQ=255)
aCGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACgggg < 2:1330697/139‑1 (MQ=255)
aCGTTGGGCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACgggg < 1:106420/139‑1 (MQ=255)
gggCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCa < 2:417185/109‑1 (MQ=255)
gggCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCa > 1:417185/1‑109 (MQ=255)
gggCTGGCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCt > 1:1150514/1‑139 (MQ=255)
ggCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGc < 1:1283373/130‑1 (MQ=255)
ggCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGc > 2:1283373/1‑130 (MQ=255)
ggCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTAcc < 1:565824/139‑1 (MQ=255)
gCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACgggg > 1:259626/1‑128 (MQ=255)
gCCCATTTCCTGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACgggg < 2:259626/128‑1 (MQ=255)
tGATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTg < 2:807933/139‑1 (MQ=255)
gATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACg < 1:923013/68‑1 (MQ=255)
gATGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACg > 2:923013/1‑68 (MQ=255)
aTGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCa < 2:1023534/101‑1 (MQ=255)
aTGCTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCa > 1:1023534/1‑101 (MQ=255)
cTTACACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTGGTGAg < 2:1266367/139‑1 (MQ=255)
|
ATGCCAATAGTGCCGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGCCAGTGTAGTCGGCGATGGTTTCATTAAGGAGCACTGCGTTAGACGGGGCATCTTTACCACGAGCAATTGGTGAG > NC_000913/1449815‑1450081
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
