Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I1 R1	63	64.8	2934156	93.7%	2749304	111.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,554	G→C	pseudogene (361/2525 nt)	yejO ←	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,554	0	G	C	100.0%	234.2 / NA	68	pseudogene (361/2525 nt)	yejO	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (31/37); total (31/37)

ACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288421‑2288688

aCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGcccccc                                                                                                                                   <  2:141284/139‑1 (MQ=255)

  ggTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGcccccccc                                                                                                                                 <  2:169849/139‑1 (MQ=255)

             aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGcccccccc                                                                                                                                 <  1:615164/128‑1 (MQ=255)

             aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGcccccccc                                                                                                                                 >  2:615164/1‑128 (MQ=255)

                     cATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAg                                                                                                              >  1:548017/1‑139 (MQ=255)

                         gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:813516/139‑1 (MQ=255)

                          cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAACGACGCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:204867/139‑1 (MQ=255)

                          cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:1451078/139‑1 (MQ=255)

                              cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGcccccc                                                                                                                                   <  1:854613/109‑1 (MQ=255)

                              cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCt                                                                                                     >  1:813596/1‑139 (MQ=255)

                              cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCAATAGCGACAAAGACGcccccc                                                                                                                                   >  2:854613/1‑109 (MQ=255)

                               gTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  1:61925/1‑139 (MQ=255)

                               gTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  2:461873/1‑139 (MQ=255)

                                   ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAAt                                                                                                <  2:1411318/139‑1 (MQ=255)

                                       tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAGATCCCCCCTCCTTCACCTCCAGTCGGCCT‑CCCTTGTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCggg                                                                                            <  2:427474/139‑3 (MQ=255)

                                             aGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCa                                                                                      >  2:636613/1‑139 (MQ=255)

                                               cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  2:1086934/129‑1 (MQ=255)

                                               cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              >  1:1086934/1‑129 (MQ=255)

                                               cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt                                                                                    >  1:745437/1‑139 (MQ=255)

                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAACGACGCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                                                         >  2:985650/1‑117 (MQ=255)

                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAAc                                                                                                                     >  2:423494/1‑105 (MQ=255)

                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAAc                                                                                                                     <  1:423494/105‑1 (MQ=255)

                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCCCCCGCCTTTAATCGTGGTATCATTc                                                                                   >  2:188001/1‑139 (MQ=255)

                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGAGTAAGcgccc                                                                                                         <  1:985650/117‑1 (MQ=255)

                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:61925/139‑1 (MQ=255)

                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               >  1:211987/1‑139 (MQ=255)

                                                       gCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc                                                                            <  2:548017/139‑1 (MQ=255)

                                                          ttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt                                                                         <  1:565113/139‑1 (MQ=255)

                                                          ttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt                                                                         <  2:1177149/139‑1 (MQ=255)

                                                                  tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGAtt                                                                                                                 >  1:410825/1‑91 (MQ=255)

                                                                  tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGAtt                                                                                                                 <  2:410825/91‑1 (MQ=255)

                                                                    ccGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCGCCCCCCATCTTTTTCAACGATTAGGCGCCCGCCTTTAATCGTGGTATGATTCGCTGCTCCAGAAACCTGTAg                                                               >  2:83322/1‑139 (MQ=255)

                                                                      gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:326686/139‑1 (MQ=255)

                                                                      gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:933860/139‑1 (MQ=255)

                                                                      gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTCCGCCATAAACCTGTAGca                                                             <  2:813596/139‑1 (MQ=255)

                                                                       caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:126408/139‑1 (MQ=255)

                                                                       caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac                                                            >  2:1453655/1‑139 (MQ=255)

                                                                        aaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           <  1:1048009/139‑1 (MQ=255)

                                                                        aaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           <  1:83322/139‑1 (MQ=255)

                                                                           tgcaaatCCCCCCTCTTTAACCTCCAGTATTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa                                                        <  1:1344946/139‑1 (MQ=255)

                                                                                atCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt                                                   <  2:872000/139‑1 (MQ=255)

                                                                                     cccTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              >  1:1388322/1‑139 (MQ=255)

                                                                                             aaCCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              >  2:539911/1‑83 (MQ=255)

                                                                                             aaCCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:539911/83‑1 (MQ=255)

                                                                                                   cAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGTGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac                                                            >  1:1037510/1‑111 (MQ=255)

                                                                                                   cAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGTGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac                                                            <  2:1037510/111‑1 (MQ=255)

                                                                                                   cAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               >  2:917229/1‑108 (MQ=255)

                                                                                                   cAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  1:917229/108‑1 (MQ=255)

                                                                                                   cAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  1:380458/1‑139 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                                                         >  1:473637/1‑65 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                                                         <  2:473637/65‑1 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          >  1:1403583/1‑64 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:1403583/64‑1 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  2:1236215/76‑1 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              >  1:1236215/1‑76 (MQ=255)

                                                                                                    agtagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  1:1383946/1‑139 (MQ=255)

                                                                                                      tagtCCT‑CCCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg                             <  2:1923/139‑1 (MQ=255)

                                                                                                         tcct‑ccCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  2:379206/1‑134 (MQ=255)

                                                                                                         tcct‑ccCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               <  1:379206/134‑1 (MQ=255)

                                                                                                           ct‑ccCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                                                          >  2:1150264/1‑105 (MQ=255)

                                                                                                           ct‑ccCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                                                          <  1:1150264/105‑1 (MQ=255)

                                                                                                           ct‑ccCTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAcc                        >  2:1336672/1‑139 (MQ=255)

                                                                                                              cccTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      >  2:241791/1‑139 (MQ=255)

                                                                                                              cccTTTTCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      >  2:192292/1‑139 (MQ=255)

                                                                                                                 ttttCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:439027/1‑51 (MQ=255)

                                                                                                                 ttttCGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:439027/51‑1 (MQ=255)

                                                                                                                     cGATAGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  2:211987/139‑1 (MQ=255)

                                                                                                                         aGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCttt                                                                                                   <  1:1225829/51‑1 (MQ=255)

                                                                                                                         aGCGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCttt                                                                                                   >  2:1225829/1‑51 (MQ=255)

                                                                                                                           cGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:245898/1‑41 (MQ=255)

                                                                                                                           cGACAAAGACGCCCCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:245898/41‑1 (MQ=255)

                                                                                                                             aCAAAGACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       <  1:461873/139‑1 (MQ=255)

                                                                                                                                  gACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:241791/139‑1 (MQ=255)

                                                                                                                                  gACGCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:1242214/139‑1 (MQ=255)

ACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑CCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288421‑2288688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A