Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A14 F1 I2 R1	70	59.9	2639336	94.5%	2494172	113.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,802,147	G→T	N304K (AAC→AAA)	waaO ←	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,802,147	0	G	T	100.0%	465.1 / NA	130	N304K (AAC→AAA)	waaO	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (70/60); total (70/60)

Only 100 of 131 total aligned reads displayed.

ATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAATAGTA  >  NC_000913/3802012‑3802279

atatCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTc                                                                                                                                   >  2:410023/1‑139 (MQ=255)

      ttACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTc                                                                                                                             >  1:448770/1‑139 (MQ=255)

      ttACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTc                                                                                                                             >  1:1160037/1‑139 (MQ=255)

       tACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCa                                                                                                                            >  1:100890/1‑139 (MQ=255)

       tACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCa                                                                                                                            >  2:1013725/1‑139 (MQ=255)

        aCTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAg                                                                                                                           >  1:691992/1‑139 (MQ=255)

         cTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGc                                                                                                                          >  2:899401/1‑139 (MQ=255)

         cTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGc                                                                                                                          >  1:1290250/1‑139 (MQ=255)

          tttATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCa                                                                                                                         <  2:526508/139‑1 (MQ=255)

             ataGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      <  2:1232264/139‑1 (MQ=255)

              taGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGc                                                                                                                     <  1:410023/139‑1 (MQ=255)

               aGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGcc                                                                                                                    >  1:600442/1‑139 (MQ=255)

                gTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATAGCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCg                                                                                                                   <  1:153094/139‑1 (MQ=255)

                   tCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      >  1:387219/1‑133 (MQ=255)

                   tCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      <  2:387219/133‑1 (MQ=255)

                   tCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTAt                                                                                                                >  1:653727/1‑139 (MQ=255)

                   tCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTAt                                                                                                                >  2:245516/1‑139 (MQ=255)

                        gTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      >  2:837403/1‑128 (MQ=255)

                        gTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCCATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      <  1:837403/128‑1 (MQ=255)

                                gCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGa                                                                                                   <  2:1249180/139‑1 (MQ=255)

                                    tATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      >  1:700059/1‑116 (MQ=255)

                                          ttCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCAtttttt                                                                                         >  2:1148564/1‑139 (MQ=255)

                                           tCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      >  1:1257204/1‑109 (MQ=255)

                                           tCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      <  2:1257204/109‑1 (MQ=255)

                                           tCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTg                                                                                        >  2:333851/1‑139 (MQ=255)

                                            cAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGc                                                                                       <  2:1012592/139‑1 (MQ=255)

                                                      aaaaaGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAg                                                                             <  2:1275493/139‑1 (MQ=255)

                                                        aaaGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGc                                                                           <  1:2290/139‑1 (MQ=255)

                                                           gATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtg                                                                        <  2:600442/139‑1 (MQ=255)

                                                           gATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtg                                                                        <  2:101797/139‑1 (MQ=255)

                                                              aGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAg                                                                             <  1:1010041/131‑1 (MQ=255)

                                                                      aaTCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGAt                                                             <  2:653727/139‑1 (MQ=255)

                                                                             ttAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATa                                                                   >  2:1052663/1‑126 (MQ=255)

                                                                             ttAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATa                                                                   <  1:1052663/126‑1 (MQ=255)

                                                                             ttAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCa                                                      >  1:371434/1‑139 (MQ=255)

                                                                                   atCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGc                                                                                       <  1:638517/100‑1 (MQ=255)

                                                                                   atCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGc                                                                                       >  2:638517/1‑100 (MQ=255)

                                                                                          cTTTTTAAGCATATGTTTTGCGCTATACCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCAtttt                                                                                           >  2:625342/1‑89 (MQ=255)

                                                                                           tttttAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATGATCCCAGGCCCAATCATGcc                                        <  2:1160037/139‑1 (MQ=255)

                                                                                             tttAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACg                                                                                                                      <  2:986353/59‑1 (MQ=255)

                                                                                               tAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAggg                                    <  1:333851/139‑1 (MQ=255)

                                                                                               tAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAggg                                    <  2:1175376/139‑1 (MQ=255)

                                                                                                aaGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGc                                   <  1:245516/139‑1 (MQ=255)

                                                                                                    atatGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCttgg                               >  1:961235/1‑139 (MQ=255)

                                                                                                     tatGTTTTGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGc                                                                                       <  1:1131045/82‑1 (MQ=255)

                                                                                                          ctgtcgcTATTTCTTATTTGATTGCTATTTTTCCGTTACAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTACATAAAGGCTTTTGAGACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGct                         <  1:910161/135‑2 (MQ=255)

                                                                                                           ttGCGCTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGccc                        >  2:979549/1‑139 (MQ=255)

                                                                                                             gcgcTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGc                                                                                                     <  2:352289/60‑1 (MQ=255)

                                                                                                             gcgcTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGa                      >  2:706190/1‑139 (MQ=255)

                                                                                                              cgcTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAg                                                                             >  2:534215/1‑83 (MQ=255)

                                                                                                              cgcTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAg                                                                             <  1:534215/83‑1 (MQ=255)

                                                                                                                cTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGcc                         >  2:973225/1‑133 (MQ=255)

                                                                                                                cTATATCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGcc                         <  1:973225/133‑1 (MQ=255)

                                                                                                                 tataTCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGAtata                  <  2:448770/139‑1 (MQ=255)

                                                                                                                  atatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATaa                 <  1:1148564/139‑1 (MQ=255)

                                                                                                                  atatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATaa                 <  1:979549/139‑1 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtg                                                                        <  2:543178/83‑1 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtg                                                                        <  2:436834/83‑1 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtg                                                                        >  1:543178/1‑83 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGcc                                        >  2:256784/1‑115 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGcc                                        <  1:256784/115‑1 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAAt                >  2:680993/1‑139 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAAt                >  2:1226259/1‑139 (MQ=255)

                                                                                                                   tatCTTAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAAt                >  2:624056/1‑139 (MQ=255)

                                                                                                                       ttAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGAt            <  1:860636/139‑1 (MQ=255)

                                                                                                                        tAATTGATTGCTATTTTTCGGTTTCAGCTACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTTGTTGGCCCGATATAATgtctg           >  2:910161/1‑135 (MQ=255)

                                                                                                                        tAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGc                                                                                       <  2:1075129/63‑1 (MQ=255)

                                                                                                                        tAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtgtg                                                                      >  1:1004836/1‑80 (MQ=255)

                                                                                                                        tAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTtgtg                                                                      <  2:1004836/80‑1 (MQ=255)

                                                                                                                        tAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATcc                                                        <  2:683384/94‑1 (MQ=255)

                                                                                                                        tAATTGATTGCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATa           >  2:1281151/1‑139 (MQ=255)

                                                                                                                          attgattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCtt                                                                         <  2:166483/75‑1 (MQ=255)

                                                                                                                          attgattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCtt                                                                         >  1:166483/1‑75 (MQ=255)

                                                                                                                           ttgattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGc                                                                                                     >  1:546193/1‑46 (MQ=255)

                                                                                                                            tgattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATaaaaa       <  1:621979/139‑1 (MQ=255)

                                                                                                                             gattgTTATTTTTCGGTTTCAGCAACGCCGTATTCTACCATAGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCttggt                              >  1:198595/1‑115 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATa                                                                                >  2:172069/1‑65 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATa                                                                                <  1:172069/65‑1 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATa                                                                   <  2:1048725/78‑1 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATa                                                                   >  1:1048725/1‑78 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGcc                                        <  2:230490/105‑1 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATg               <  1:504159/130‑1 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATg               >  2:504159/1‑130 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAAt      >  1:607703/1‑139 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAAt      >  2:876077/1‑139 (MQ=255)

                                                                                                                             gattgCTATTTTTCGGTTTCAGCAACGCCGTATTCTACCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCttggt                              <  2:198595/115‑1 (MQ=255)

                                                                                                                               ttgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCg                                                                                                    >  1:99730/1‑43 (MQ=255)

                                                                                                                               ttgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCt                                                                                     <  2:681646/58‑1 (MQ=255)

                                                                                                                               ttgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCt                                                                                     >  1:681646/1‑58 (MQ=255)

                                                                                                                               ttgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAATAg    >  1:704558/1‑139 (MQ=255)

                                                                                                                               ttgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAATAg    >  1:543578/1‑139 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATaa                                                                               <  1:504299/63‑1 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGa                                                                     <  2:588468/73‑1 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCttggt                              <  2:1004519/112‑1 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCttggt                              >  1:1004519/1‑112 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGcc                         >  1:1047061/1‑117 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCg                       >  2:79547/1‑119 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCg                       <  1:79547/119‑1 (MQ=255)

                                                                                                                                tgCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAATAGt   >  2:610928/1‑139 (MQ=255)

                                                                                                                                 gCTATTTTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGTCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAATAGTa  <  2:1142523/139‑1 (MQ=255)

ATATCATTACTTTATAGTTTCCCAGTTTTAATGCTTTATCTTTTCAATAAAATAAAAAAGATAGTTGCTAAATCCTTTTAGATATCTATGCTTTTTAAGCATATGTTTTGCGCTATATCTTAATTGATTGCTATTGTTCGGTTTCAGCAACGCCGTATTCTTCCATGGCGAAGCATTTTTTGCCTCCATAAAGGCTTGTGATACAGGATAATCCCAGGCCCAATCATGCCAGGGCTTGGTTGGCCCGATATAATGGATAAAAATAGTA  >  NC_000913/3802012‑3802279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A