Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I2 R1	94	59.5	3027142	91.9%	2781943	108.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,767,500	T→C	intergenic (+145/‑210)	rnlB → / → yfjP	CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,767,500	0	T	C	100.0%	236.8 / NA	69	intergenic (+145/‑210)	rnlB/yfjP	CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (31/38); total (31/38)

TTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑TCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCA  >  NC_000913/2767365‑2767634

ttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑cccc                                                                                                                                     <  1:997990/139‑1 (MQ=255)

        gAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTa                                                                                                                             <  2:36394/139‑1 (MQ=255)

        agacaggTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTa                                                                                                                             <  1:201326/133‑1 (MQ=255)

           ccAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAAc                                                                                                                          <  2:514236/139‑1 (MQ=255)

           ccAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCACTCACAACGTCCTGCATAGGGCACACGATTTCCACTCTGAACCCGCGACTAAATT‑CCCCCCCCTTTaacc                                                                                                                          >  2:341223/1‑137 (MQ=255)

            cAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACt                                                                                                                         <  1:571401/139‑1 (MQ=255)

                      ttCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACTCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCTTCCCATTAACATGCTCaaaaat                                                                                                               >  2:109795/1‑139 (MQ=255)

                      ttCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAACCCCCCTCACAACGTCCTGCATAGCGAACACGTTTTCCCCTGTGCACCCACGACTAACTT‑CCCCCCCCTTTAAACTTCTCaataat                                                                                                               >  1:789941/1‑139 (MQ=255)

                        cGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCACCTGTGCACCCACGATTACATT‑CCCTCCCCTTTAAACTACTCCATAATGt                                                                                                             >  2:529433/1‑139 (MQ=255)

                         gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCGCCTCACAACGTCATGCATAGAAAACCAGTTTTACCCTGTGCGCCCCCGAATAAATT‑CACCCCCCTTTAAACTTCCCaatctgtct                                                                                                            >  2:201326/1‑133 (MQ=255)

                         gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACACCGCCCTACATATGGAAGTAGTTTTACCCTTAGAACCAACTACCAAATA‑CCTCCCCCTTTTAACTTCTCAATAATGTc                                                                                                            >  1:36864/1‑139 (MQ=255)

                         gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGTGAACACGGTTTCCCCTGTACACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTc                                                                                                            >  2:1281238/1‑139 (MQ=255)

                         gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑cccc                                                                                                                                     <  1:1081469/114‑1 (MQ=255)

                         gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGATTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTc                                                                                                            >  1:719453/1‑139 (MQ=255)

                         gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGACCTGCATAGGGCACACGTTTTCCCCTGTGCACCCACGACTAAATT‑cccc                                                                                                                                     >  2:1081469/1‑114 (MQ=255)

                                      gctatTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCATTAATGTCACCAATTTTCTgg                                                                                               <  2:886524/137‑1 (MQ=255)

                                                  tCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTatgat                                                                                   <  1:385393/139‑1 (MQ=255)

                                                  tCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCACAATAATGCAACCAATTTTCTGGAAATCTTatgct                                                                                   >  2:894052/1‑137 (MQ=255)

                                                     aaTATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGcc                                                                                <  1:529433/139‑1 (MQ=255)

                                                         tGATCAAATAGCATTCACCCCCCCTCGCAACCTTCTGTTTAGCGTAGACCTTCTCCCCAGTGCCCCCACGACGAAATT‑CCCCCCCCTTAACACTTCTCAATAATGTCGCTAATTTTCTGGAAATCCTATTTTGACTTTc                                                                            <  2:1491277/139‑1 (MQ=255)

                                                          gATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTATACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTcc                                                                           <  1:274758/139‑1 (MQ=255)

                                                                ttAGCATTAACCCCCCCTCACAACGTCCTGCATAGAGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCTGTaa                                                                     <  1:1157512/138‑1 (MQ=255)

                                                                    cATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTTCCCTGTGCACCCCCGACTAAATT‑CCCCCCACTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATgg                                                                 <  2:36864/139‑1 (MQ=255)

                                                                      ttAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAAt                                                                                           >  2:935468/1‑111 (MQ=255)

                                                                      ttAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAAt                                                                                           <  1:935468/111‑1 (MQ=255)

                                                                         aCCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTc                                                                                                  <  2:801640/101‑1 (MQ=255)

                                                                         aCCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCtg                                                            >  2:1342719/1‑139 (MQ=255)

                                                                         aCCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGACACCAAtttta                                                                                                  >  1:801640/1‑100 (MQ=255)

                                                                          cccccccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTTTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCtgt                                                           >  1:1284369/1‑139 (MQ=255)

                                                                             ccccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAg                                                        <  1:908247/139‑1 (MQ=255)

                                                                              cccTCACAACGTCCTTCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTgg                                                                                               <  1:801619/99‑1 (MQ=255)

                                                                              cccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTaaa                                                                                                                           >  1:1333856/1‑71 (MQ=255)

                                                                              cccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTaaa                                                                                                                           <  2:1333856/71‑1 (MQ=255)

                                                                              cccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTgg                                                                                               >  2:801619/1‑99 (MQ=255)

                                                                              cccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGt                                                                       <  2:44971/123‑1 (MQ=255)

                                                                              cccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGt                                                       >  1:513206/1‑139 (MQ=255)

                                                                              cccTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCCCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGt                                                                       >  1:44971/1‑123 (MQ=255)

                                                                                  cacaACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTaaa                                                                                                                           >  1:507711/1‑67 (MQ=255)

                                                                                  cacaACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTaaa                                                                                                                           <  2:507711/67‑1 (MQ=255)

                                                                                       cGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGa                                              >  2:1487050/1‑139 (MQ=255)

                                                                                       cGTCCTGCATAGGGAACACGTGTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGa                                              <  1:341223/139‑1 (MQ=255)

                                                                                         tCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGAtt                                            >  1:579049/1‑139 (MQ=255)

                                                                                          ccTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGa                                              <  1:1164786/136‑1 (MQ=255)

                                                                                          ccTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGa                                              >  2:1164786/1‑136 (MQ=255)

                                                                                            tGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTg                                         <  1:1075620/139‑1 (MQ=255)

                                                                                            tGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTg                                         <  1:1487050/139‑1 (MQ=255)

                                                                                             gCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATTATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGc                                        <  2:1000897/139‑1 (MQ=255)

                                                                                              cATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTCCCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGa                                              >  2:882960/1‑133 (MQ=255)

                                                                                              cATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTCCCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGa                                              <  1:882960/133‑1 (MQ=255)

                                                                                               aTAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCaa                                      <  2:579049/139‑1 (MQ=255)

                                                                                                   ggAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGc                                        >  2:1135647/1‑133 (MQ=255)

                                                                                                   ggAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGc                                        <  1:1135647/133‑1 (MQ=255)

                                                                                                         cGTTTTCCGCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCa                            <  1:894052/139‑1 (MQ=255)

                                                                                                             ttCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGtt                                                      >  2:1385108/1‑109 (MQ=255)

                                                                                                             ttCCCCTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGtt                                                      <  1:1385108/109‑1 (MQ=255)

                                                                                                               ccccTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTg                         >  1:759779/1‑136 (MQ=255)

                                                                                                               ccccTGTGCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTg                         <  2:759779/136‑1 (MQ=255)

                                                                                                                    gtgCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAAt                                                                   >  2:968336/1‑89 (MQ=255)

                                                                                                                    gtgCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAAt                                                                   <  1:968336/89‑1 (MQ=255)

                                                                                                                    gtgCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATc                 >  1:217068/1‑139 (MQ=255)

                                                                                                                     tgCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGt                                                                       >  2:240241/1‑84 (MQ=255)

                                                                                                                     tgCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGt                                                                       <  1:240241/84‑1 (MQ=255)

                                                                                                                      gCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCtt               >  2:1075386/1‑139 (MQ=255)

                                                                                                                      gCACCCACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCtt               <  1:1342719/139‑1 (MQ=255)

                                                                                                                          ccACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGa                                                                                              <  2:1260015/56‑1 (MQ=255)

                                                                                                                          ccACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGa                                                                                              >  1:1260015/1‑56 (MQ=255)

                                                                                                                           cACGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCagat          <  1:1075386/139‑1 (MQ=255)

                                                                                                                             cGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTgg                                                                                               <  2:1468781/52‑1 (MQ=255)

                                                                                                                             cGACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTgg                                                                                               >  1:1468781/1‑52 (MQ=255)

                                                                                                                              gACTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAAATTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCagataga       <  2:789941/139‑1 (MQ=255)

                                                                                                                               aCTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTg                                         <  1:1068086/104‑1 (MQ=255)

                                                                                                                               aCTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGc                                        <  1:1377802/105‑1 (MQ=255)

                                                                                                                               aCTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGc                                        >  2:1377802/1‑105 (MQ=255)

                                                                                                                               aCTAAATT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTGTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTg                                         >  2:1068086/1‑104 (MQ=255)

                                                                                                                                   aaTT‑CCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCa  <  1:1281238/139‑1 (MQ=255)

TTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATT‑TCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCA  >  NC_000913/2767365‑2767634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A