Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F1 I2 R1	97	53.3	2484976	94.5%	2348302	111.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,072,659	G→A	G374D (GGC→GAC)	flu →	CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,072,659	0	G	A	100.0%	780.4 / NA	217	G374D (GGC→GAC)	flu	CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (105/112); total (105/112)

Only 100 of 220 total aligned reads displayed.

GGAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCT  >  NC_000913/2072523‑2072788

ggAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACa                                                                                                                                 <  1:1212172/139‑1 (MQ=255)

 gAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGacac                                                                                                                                <  2:348289/139‑1 (MQ=255)

  aGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACAcc                                                                                                                               >  1:1077775/1‑139 (MQ=255)

    cATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGc                                                                                                                             >  1:167257/1‑139 (MQ=255)

     aTTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcc                                                                                                                            <  2:1019066/139‑1 (MQ=255)

      ttCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  2:866262/139‑1 (MQ=255)

      ttCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  2:621854/139‑1 (MQ=255)

      ttCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  1:588171/139‑1 (MQ=255)

      ttCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  2:927546/139‑1 (MQ=255)

      ttCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  2:119741/139‑1 (MQ=255)

       tctcTGTTGTGGAGGGTAAAGTGGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGccac                                                                                                                          <  2:796652/139‑1 (MQ=255)

          ctGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCcaccac                                                                                                                       >  1:727105/1‑139 (MQ=255)

           tgttgtGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCaccacc                                                                                                                      <  1:470670/139‑1 (MQ=255)

           tgttgtGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCaccacc                                                                                                                      <  1:1122638/139‑1 (MQ=255)

                  gAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGccac                                                                                                                          >  2:1070603/1‑128 (MQ=255)

                  gAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCa                                                                                                               <  2:1096554/139‑1 (MQ=255)

                  gAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCa                                                                                                               >  2:822472/1‑139 (MQ=255)

                            cTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATgg                                                                                                     <  2:275699/139‑1 (MQ=255)

                              gATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCg                                                                                                   <  1:222737/139‑1 (MQ=255)

                               aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCgg                                                                                                  >  2:293498/1‑139 (MQ=255)

                               aTAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCgg                                                                                                  >  1:500608/1‑139 (MQ=255)

                                 aaTGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGacac                                                                                                                                <  1:530405/107‑1 (MQ=255)

                                 aaTGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGgtg                                                                                                <  1:1066233/139‑1 (MQ=255)

                                    gTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTAc                                                                                             >  1:442765/1‑139 (MQ=255)

                                    gTCGTACTGGAAAATGGAGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGACGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           >  2:709107/1‑109 (MQ=255)

                                     tCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCa                                                                                                               <  1:423188/120‑1 (MQ=255)

                                      cGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           >  1:411035/1‑107 (MQ=255)

                                      cGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTActg                                                                                           >  1:938035/1‑139 (MQ=255)

                                      cGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCACAACGGTGACACCGCCACCACCGTATCCATg                                                                                                             <  2:906877/121‑1 (MQ=255)

                                         aCTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTActgctg                                                                                        >  1:1135462/1‑139 (MQ=255)

                                         aCTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTActgctg                                                                                        >  2:435460/1‑139 (MQ=255)

                                          cTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGccac                                                                                                                          <  1:926994/104‑1 (MQ=255)

                                              aaaaTGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGa                                                                                   >  2:1155454/1‑139 (MQ=255)

                                                  tGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGATGGCCGATTcc                                                                               >  1:803024/1‑139 (MQ=255)

                                                  tGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCCCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTcc                                                                               >  1:252478/1‑139 (MQ=255)

                                                     cGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGt                                                                            >  1:1219398/1‑139 (MQ=255)

                                                       gACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGc                                                                                                                             >  1:292176/1‑88 (MQ=255)

                                                       gACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATgg                                                                                                     <  2:78721/112‑1 (MQ=255)

                                                       gACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATgg                                                                                                     >  1:78721/1‑112 (MQ=255)

                                                       gACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGc                                                                          >  1:944953/1‑139 (MQ=255)

                                                         cGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCg                                                                        <  1:3232/139‑1 (MQ=255)

                                                            cTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGATGCCGCTg                                                                     >  2:378350/1‑139 (MQ=255)

                                                             tGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGt                                                                    <  2:264755/139‑1 (MQ=255)

                                                             tGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGATGCCGCTGt                                                                    <  1:378350/139‑1 (MQ=255)

                                                                 tgtgCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGt                                                                <  1:560593/139‑1 (MQ=255)

                                                                  gtgCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTg                                                               <  2:16851/139‑1 (MQ=255)

                                                                  gtgCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTg                                                               <  1:705544/139‑1 (MQ=255)

                                                                    gCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  2:1206506/77‑1 (MQ=255)

                                                                    gCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcc                                                                                                                            <  1:266614/76‑1 (MQ=255)

                                                                     cTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTa                                                            >  2:29013/1‑139 (MQ=255)

                                                                        aCCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  2:1003564/73‑1 (MQ=255)

                                                                        aCCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           >  1:1003564/1‑73 (MQ=255)

                                                                        aCCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATgg                                                                                                     >  1:18072/1‑95 (MQ=255)

                                                                        aCCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATgg                                                                                                     <  2:18072/95‑1 (MQ=255)

                                                                         ccGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcca                                                                                                                           <  1:1160923/72‑1 (MQ=255)

                                                                          cGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGt                                                             >  1:1206902/1‑133 (MQ=255)

                                                                           ggACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGa                                                      <  2:699210/139‑1 (MQ=255)

                                                                             acacacAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGccac                                                                                                                          >  1:746794/1‑69 (MQ=255)

                                                                             acacacAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGc                                                    >  2:940135/1‑139 (MQ=255)

                                                                                 acaGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACg                                                <  2:455357/139‑1 (MQ=255)

                                                                                   aGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGcc                                                                         <  2:465891/112‑1 (MQ=255)

                                                                                   aGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGt                                                             >  1:854120/1‑124 (MQ=255)

                                                                                    gCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGaa                                             <  1:457130/139‑1 (MQ=255)

                                                                                      cACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAg                                           <  2:749894/139‑1 (MQ=255)

                                                                                       aCTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGa                                                                                                          <  2:1213542/75‑1 (MQ=255)

                                                                                         tAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCa                                        <  1:1052046/139‑1 (MQ=255)

                                                                                         tAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCa                                        <  2:157759/139‑1 (MQ=255)

                                                                                           aTACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCAtt                                      <  2:1135462/139‑1 (MQ=255)

                                                                                             aCCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCa                                    >  2:952282/1‑139 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcc                                                                                                                            <  1:38597/49‑1 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGcc                                                                                                                            >  2:38597/1‑49 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAg                                                                 <  2:614425/108‑1 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAg                                                                 >  1:614425/1‑108 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGt                                                             <  1:722743/112‑1 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGt                                                             >  2:722743/1‑112 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGt                                  >  2:190111/1‑139 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGt                                  >  1:805031/1‑139 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGt                                  >  2:546571/1‑139 (MQ=255)

                                                                                               ccGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGt                                  >  2:481047/1‑139 (MQ=255)

                                                                                                 gcgTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTAt                                <  1:683089/139‑1 (MQ=255)

                                                                                                  cgTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATc                               >  1:971023/1‑139 (MQ=255)

                                                                                                   gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCaccacc                                                                                                                      >  1:824300/1‑51 (MQ=255)

                                                                                                   gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCg                              >  2:1083508/1‑139 (MQ=255)

                                                                                                       atgatgGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGt                                                                    >  2:23670/1‑97 (MQ=255)

                                                                                                       atgatgGCGGAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAgg                          <  2:74045/139‑1 (MQ=255)

                                                                                                               ggAACGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGACGCGGTCAgg                  >  2:517887/1‑139 (MQ=255)

                                                                                                                 aaCGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg                <  1:297569/139‑1 (MQ=255)

                                                                                                                  aCGCTGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCgg               <  2:414511/139‑1 (MQ=255)

                                                                                                                      tGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGt                                                                    >  2:650690/1‑82 (MQ=255)

                                                                                                                      tGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGt                                                                    <  1:650690/82‑1 (MQ=255)

                                                                                                                      tGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCa                                        <  2:661385/110‑1 (MQ=255)

                                                                                                                      tGGATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCa                                        >  1:661385/1‑110 (MQ=255)

                                                                                                                       ggATGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGcc          <  1:283300/139‑1 (MQ=255)

                                                                                                                         aTGTCCGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCt        <  2:971023/139‑1 (MQ=255)

                                                                                                                              cGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGTGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGc   <  2:727105/139‑1 (MQ=255)

                                                                                                                              cGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGc   <  2:847324/139‑1 (MQ=255)

                                                                                                                              cGCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGc   <  1:906716/139‑1 (MQ=255)

                                                                                                                               gCAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCt  >  1:715064/1‑139 (MQ=255)

                                                                                                                                cAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGccc         <  1:303327/131‑1 (MQ=255)

                                                                                                                                cAACGGTGACACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGccc         >  2:303327/1‑131 (MQ=255)

GGAGCATTCTCTGTTGTGGAGGGTAAAGCTGATAATGTCGTACTGGAAAATGGCGGACGCCTGGATGTGCTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCT  >  NC_000913/2072523‑2072788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A