Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I1 R1
|
65 |
25.3 |
1027584 |
98.0% |
1007032 |
120.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,052,156 |
C→T |
intergenic (+142/+120) |
yeeJ → / ← yeeL |
putative adhesin/pseudogene, glycosyltransferase homology |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,052,156 | 0 | C | T | 100.0%
| 110.5
/ NA
| 32 | intergenic (+142/+120) | yeeJ/yeeL | putative adhesin/pseudogene, glycosyltransferase homology |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/19); total (13/19) |
GGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTC > NC_000913/2052052‑2052275
|
ggCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTg < 2:490307/139‑1 (MQ=255)
tCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTg > 1:164567/1‑139 (MQ=255)
ctACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAg < 2:42416/139‑1 (MQ=255)
ctACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAg < 2:422268/139‑1 (MQ=255)
ctACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAg > 1:498629/1‑139 (MQ=255)
aaCTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAGAGGCTGGTTTTCTGTGATGATTGAc < 2:435151/130‑1 (MQ=255)
aaCTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGAc > 1:435151/1‑130 (MQ=255)
cTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCagag > 1:122485/1‑139 (MQ=255)
gCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTAt > 2:331743/1‑139 (MQ=255)
gCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTAt > 1:446253/1‑139 (MQ=255)
acaGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGAcacca < 2:122485/139‑1 (MQ=255)
caGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCaga < 1:273370/123‑1 (MQ=255)
caGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCaga > 2:273370/1‑123 (MQ=255)
aaaaTGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGt > 2:100339/1‑139 (MQ=255)
aataaataAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATaa < 1:331743/139‑1 (MQ=255)
aaataaaAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAg < 2:34971/139‑1 (MQ=255)
aataaaAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGAcacca < 2:12771/125‑1 (MQ=255)
aataaaAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGAcacca > 1:12771/1‑125 (MQ=255)
ataaaAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGAt < 1:100339/139‑1 (MQ=255)
aTGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCAt < 2:88824/139‑1 (MQ=255)
gCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTa < 1:495380/139‑1 (MQ=255)
gCACCGCCAGAATCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGACTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTACTGATGACACCACCGTTCATAACATATCGGCATTACTa < 1:343608/139‑1 (MQ=255)
aaTCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTa < 1:428991/139‑1 (MQ=255)
aTCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCa > 2:22945/1‑122 (MQ=255)
aTCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCa < 1:22945/122‑1 (MQ=255)
tCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACt < 2:143395/139‑1 (MQ=255)
tCGCGTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACt < 2:498629/139‑1 (MQ=255)
cgTTCGATGTGACTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGtc > 1:68847/1‑139 (MQ=255)
aCTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAg > 1:128418/1‑100 (MQ=255)
aCTATGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAg < 2:128418/100‑1 (MQ=255)
tGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTa > 1:64084/1‑109 (MQ=255)
tGATTATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTa < 2:64084/109‑1 (MQ=255)
|
GGCACTCTTTTTTACATTCCCTCTACAGAACTAGCCCTTCTCTCACAGAAAATGAATAAATAAAAATGCGGCACCGCCAGAATCGCGTTCGATGTGACTATGATCATTTTCGGTGAGTACTGCTTTGATCTAAAGGCTGGTTTTCTGTGATGATTGACCAGCCTCAGAGTATTGATGACACCACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTC > NC_000913/2052052‑2052275
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
