Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I2 R1 78 65.3 3016648 94.6% 2853749 111.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,656,658 G→A A159T (GCC→ACC)  speG → spermidine N(1)‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,656,6580GA100.0% 288.3 / NA 83A159T (GCC→ACC) speGspermidine N(1)‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/42);  total (41/42)

TTCTCAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATGCCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGATGGTGTAAACCCGTTCGACG  >  NC_000913/1656524‑1656792
                                                                                                                                      |                                                                                                                                      
ttCTCAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCAt                                                                                                                                    >  1:290265/1‑139 (MQ=255)
 tctcAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCAtt                                                                                                                                   >  1:1297362/1‑139 (MQ=255)
    cAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGc                                                                                                                                <  2:581678/139‑1 (MQ=255)
    cAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGc                                                                                                                                <  1:1194068/139‑1 (MQ=255)
    cAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGc                                                                                                                                <  2:722877/139‑1 (MQ=255)
     aaTCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCa                                                                                                                               <  1:493490/139‑1 (MQ=255)
     aaTCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCa                                                                                                                               <  1:206041/139‑1 (MQ=255)
      aTCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              <  1:781034/139‑1 (MQ=255)
       tctcTATAAGCTGTGTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAtg                                                                                                                             >  2:426365/1‑139 (MQ=255)
                gCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAATCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTc                                                                                                                    <  2:1012467/139‑1 (MQ=255)
                   gTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAg                                                                                                                 >  2:1026874/1‑139 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCg                                                                                                                                 >  2:659449/1‑121 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCg                                                                                                                                 <  1:618778/121‑1 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCg                                                                                                                                 <  1:659449/121‑1 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCg                                                                                                                                 >  2:618778/1‑121 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              <  2:121881/124‑1 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              >  1:121881/1‑124 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCa                                                                                                               >  2:672127/1‑139 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCa                                                                                                               >  2:1000563/1‑139 (MQ=255)
                     aTCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCa                                                                                                               >  1:413107/1‑139 (MQ=255)
                      tCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCAt                                                                                                              <  2:1483816/139‑1 (MQ=255)
                      tCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCAt                                                                                                              <  1:1039602/139‑1 (MQ=255)
                      tCTGATCGTTGAGAAAGAGAATGAAAAAGCGATTCACATTTACCGCAATCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCAt                                                                                                              <  2:290265/139‑1 (MQ=255)
                          aTCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGt                                                                                                          >  1:284060/1‑139 (MQ=255)
                           tCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTa                                                                                                         >  2:823763/1‑139 (MQ=255)
                            cGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATCTCGTAATACCATTCGCATGTGTATATTACAGCATCAGTag                                                                                                        >  2:169824/1‑138 (MQ=255)
                              ttGATAAAGAGAATGAGAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              <  2:949640/115‑1 (MQ=255)
                              ttGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              >  1:949640/1‑115 (MQ=255)
                              ttGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCt                                                                                                      >  1:745910/1‑139 (MQ=255)
                              ttGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCt                                                                                                      >  1:100366/1‑139 (MQ=255)
                              ttGATAAAGAGAATGAAAAAGCGATTCACATTGACCGCAGGCTTGTCTTTTCGGTTGAAGGTGAATTGATGCACGAGATCTTTAATAATGGTCAATATCGTAATACCATTCGAATGTGTATATTCGAGAATCAGTATCt                                                                                                      >  2:80665/1‑139 (MQ=255)
                                gATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              >  1:844492/1‑113 (MQ=255)
                                gATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              <  2:844492/113‑1 (MQ=255)
                                gATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCa                                                                                                            >  2:1432899/1‑131 (MQ=255)
                                gATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCa                                                                                                            <  1:1432899/131‑1 (MQ=255)
                                gATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTgg                                                                                                    <  1:426365/139‑1 (MQ=255)
                                    aaGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCaga                                                                                                >  2:676084/1‑139 (MQ=255)
                                        gaATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGcac                                                                                            >  1:1183236/1‑139 (MQ=255)
                                         aaTGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGGACGTGTTCTTTATTAATGGTCAATATCGTAATACCATACGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGcaca                                                                                           >  2:1176809/1‑139 (MQ=255)
                                         aaTGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTcc                                                                                                                   <  2:1417903/115‑1 (MQ=255)
                                         aaTGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTcc                                                                                                                   >  1:1417903/1‑115 (MQ=255)
                                           tGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACaaa                                                                                         >  2:586744/1‑139 (MQ=255)
                                               aaaGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAacac                                                                                     <  2:745910/139‑1 (MQ=255)
                                               aaaGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAacac                                                                                     <  2:100366/139‑1 (MQ=255)
                                                      ttCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGtat                                                                                                                        >  1:1300933/1‑97 (MQ=255)
                                                      ttCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGtat                                                                                                                        <  2:1300933/97‑1 (MQ=255)
                                                      ttCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCa                                                                              <  2:327419/139‑1 (MQ=255)
                                                                   cAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCa                                                                                                  <  2:1087055/106‑1 (MQ=255)
                                                                   cAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCa                                                                                                  >  1:1087055/1‑106 (MQ=255)
                                                                     aGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCAt                                                                                                              >  1:1444186/1‑92 (MQ=255)
                                                                     aGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCAt                                                                                                              <  2:1444186/92‑1 (MQ=255)
                                                                        ttGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGAc                                                            <  1:676084/139‑1 (MQ=255)
                                                                          ggCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCg                                                          <  1:324119/139‑1 (MQ=255)
                                                                          ggCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCg                                                          <  1:823763/139‑1 (MQ=255)
                                                                          ggCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCg                                                          >  2:324119/1‑139 (MQ=255)
                                                                               ttCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACaa                                                     <  1:586744/139‑1 (MQ=255)
                                                                                 cGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATa                                                   >  1:149097/1‑139 (MQ=255)
                                                                                    ttGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              <  2:1273579/61‑1 (MQ=255)
                                                                                    ttGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCAt                                                                                                                              >  1:1273579/1‑61 (MQ=255)
                                                                                    ttGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                <  2:1183236/139‑1 (MQ=255)
                                                                                    ttGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                <  1:1176809/139‑1 (MQ=255)
                                                                                    ttGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                <  2:284060/139‑1 (MQ=255)
                                                                                              aTTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                <  2:414705/129‑1 (MQ=255)
                                                                                              aTTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGAAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                >  1:414705/1‑129 (MQ=255)
                                                                                                tGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAatc                                    <  1:672127/139‑1 (MQ=255)
                                                                                                   tGCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAatcgat                                 >  1:1250943/1‑139 (MQ=255)
                                                                                                    gCACGAGTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAatcgatc                                <  2:149097/139‑1 (MQ=255)
                                                                                                          gTTCTTTATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTAttt                          >  2:1043276/1‑139 (MQ=255)
                                                                                                              tttATTAATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGa                      <  2:413107/139‑1 (MQ=255)
                                                                                                              tttATTAATAGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGa                      <  1:9687/139‑1 (MQ=255)
                                                                                                                tattaATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGAc                                                                           >  2:379181/1‑84 (MQ=255)
                                                                                                                tattaATGGTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGAc                                                                           <  1:379181/84‑1 (MQ=255)
                                                                                                                        gTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGaa                                                                  >  1:1024232/1‑85 (MQ=255)
                                                                                                                        gTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGaa                                                                  <  2:1024232/85‑1 (MQ=255)
                                                                                                                        gTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                >  2:642915/1‑103 (MQ=255)
                                                                                                                        gTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCa                                                <  1:642915/103‑1 (MQ=255)
                                                                                                                        gTCAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGATGGTGTAAAc            >  2:129780/1‑139 (MQ=255)
                                                                                                                          cAATATCGTAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGATGGTGTAAAccc          >  1:155844/1‑139 (MQ=255)
                                                                                                                                  tAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCag                                                                                                 >  1:994557/1‑44 (MQ=255)
                                                                                                                                  tAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCag                                                                                                 <  2:994557/44‑1 (MQ=255)
                                                                                                                                  tAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGa                      <  2:104098/119‑1 (MQ=255)
                                                                                                                                  tAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGa                      >  1:104098/1‑119 (MQ=255)
                                                                                                                                  tAATACCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGATGGTGTAAACCCGTTCGAcg  >  2:559733/1‑139 (MQ=255)
                                                                                                                                      |                                                                                                                                      
TTCTCAATCTCTATAAGCTGTATCTGATCGTTGATAAAGAGAATGAAAAAGCGATTCACATTTACCGCAAGCTTGGCTTTTCGGTTGAAGGTGAATTGATGCACGAGTTCTTTATTAATGGTCAATATCGTAATGCCATTCGCATGTGTATATTCCAGCATCAGTATCTGGCAGAGCACAAAACACCGGGTCAGACTCTCCTGAAGCCGACCGCACAATAGCATTAATAATAATCGATCGTATTTTTGATGGTGTAAACCCGTTCGACG  >  NC_000913/1656524‑1656792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A