Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I2 R1 78 65.3 3016648 94.6% 2853749 111.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,672,123 G→A G26E (GGG→GAG)  hcaD → phenylpropionate dioxygenase, ferredoxin reductase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,672,1230GA100.0% 256.7 / NA 73G26E (GGG→GAG) hcaDphenylpropionate dioxygenase, ferredoxin reductase subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/37);  total (36/37)

GGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGGGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACTGGTGGCAGGAAA  >  NC_000913/2671987‑2672257
                                                                                                                                        |                                                                                                                                      
ggTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGt                                                                                                                                      >  2:1043806/1‑139 (MQ=255)
       cGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCgg                                                                                                                               <  1:950412/139‑1 (MQ=255)
                 cATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGACAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     <  2:1007711/139‑1 (MQ=255)
                   ttCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCt                                                                                                                   <  2:919950/139‑1 (MQ=255)
                    tCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTg                                                                                                                  >  1:395472/1‑139 (MQ=255)
                                ggctgggctgGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAg                                                                                                      <  2:1114309/139‑1 (MQ=255)
                                 gctgggctggATCTTTAAGGCAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCACTGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGc                                                                                                     <  1:1043806/139‑1 (MQ=255)
                                   tgggctggATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGa                                                                                                   <  1:562906/139‑1 (MQ=255)
                                     ggctggATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     >  1:471741/1‑119 (MQ=255)
                                     ggctggATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     <  2:471741/119‑1 (MQ=255)
                                     ggctggATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACa                                                                                                 <  2:1328038/139‑1 (MQ=255)
                                          gATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTc                                                                                            >  1:24600/1‑139 (MQ=255)
                                               ttAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTAt                                                                                       >  2:1422856/1‑139 (MQ=255)
                                                tAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCtt                                                                                         >  2:434074/1‑136 (MQ=255)
                                                tAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCtt                                                                                         <  1:434074/136‑1 (MQ=255)
                                                  aGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGaa                                                                                    <  1:1422856/139‑1 (MQ=255)
                                                     aaGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGAc                                                                                                  >  1:1491414/1‑122 (MQ=255)
                                                     aaGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGAc                                                                                                  <  2:1491414/122‑1 (MQ=255)
                                                      aGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     <  1:652841/102‑1 (MQ=255)
                                                      aGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     >  2:652841/1‑102 (MQ=255)
                                                       gCACGCTGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGAcc                                                                               >  1:775431/1‑139 (MQ=255)
                                                       gCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGAcc                                                                               >  2:550661/1‑139 (MQ=255)
                                                        cACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGAc                                                                                                  >  1:331790/1‑119 (MQ=255)
                                                        cACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGAc                                                                                                  <  2:331790/119‑1 (MQ=255)
                                                         aCGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCGAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAGCGACCTc                                                                             <  1:1478819/139‑1 (MQ=255)
                                                           gATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCa                                                                           <  1:1271200/139‑1 (MQ=255)
                                                            aTGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGa                                                                                     <  1:1261123/128‑1 (MQ=255)
                                                            aTGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGa                                                                                     >  2:1261123/1‑128 (MQ=255)
                                                            aTGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCAc                                                                          >  2:900019/1‑139 (MQ=255)
                                                             tGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCAct                                                                         >  1:179622/1‑139 (MQ=255)
                                                                  gaaaAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTc                                                                             <  1:377680/130‑1 (MQ=255)
                                                                  gaaaAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTc                                                                             >  2:377680/1‑130 (MQ=255)
                                                                         cGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     >  1:185471/1‑83 (MQ=255)
                                                                         cGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCAt                                                                                                                     <  2:185471/83‑1 (MQ=255)
                                                                          gATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATg                                                            <  1:550661/139‑1 (MQ=255)
                                                                           aTCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTc                                                                             >  2:1465056/1‑121 (MQ=255)
                                                                           aTCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTc                                                                             <  1:1465056/121‑1 (MQ=255)
                                                                           aTCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGt                                                           >  1:445477/1‑139 (MQ=255)
                                                                             cATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTg                                                         <  2:634706/139‑1 (MQ=255)
                                                                                      cGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGAt                                                >  2:1385271/1‑139 (MQ=255)
                                                                                       ggTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGAt                                                                                                         >  2:1337087/1‑81 (MQ=255)
                                                                                       ggTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGAt                                                                                                         <  1:1337087/81‑1 (MQ=255)
                                                                                       ggTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGAtt                                               >  2:831484/1‑139 (MQ=255)
                                                                                       ggTGGCGGGCAAGCGGCGGCAATGGCAGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTGTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGAtt                                               >  2:323965/1‑139 (MQ=255)
                                                                                        gTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGaa                                                                                    <  2:180339/101‑1 (MQ=255)
                                                                                        gTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGaa                                                                                    >  1:180339/1‑101 (MQ=255)
                                                                                        gTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTc                                              >  1:237004/1‑139 (MQ=255)
                                                                                          ggCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAg                                                                                                      >  2:895367/1‑81 (MQ=255)
                                                                                          ggCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAg                                                                                                      <  1:895367/81‑1 (MQ=255)
                                                                                          ggCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTccc                                            >  2:444224/1‑139 (MQ=255)
                                                                                            cGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCg                                          <  2:395472/139‑1 (MQ=255)
                                                                                            cGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCg                                          >  2:484304/1‑139 (MQ=255)
                                                                                            cGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCg                                          <  1:1385271/139‑1 (MQ=255)
                                                                                            cGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCg                                          >  2:221153/1‑139 (MQ=255)
                                                                                                     ggcggcAATGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTAcag                                 <  2:775431/139‑1 (MQ=255)
                                                                                                            aTGGCTGCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGgtgt                          <  1:900019/139‑1 (MQ=255)
                                                                                                                  gCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGa                                                                                                       >  1:880000/1‑56 (MQ=255)
                                                                                                                  gCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGa                                                                                                       <  2:880000/56‑1 (MQ=255)
                                                                                                                  gCGGCCTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCg                    <  1:831484/139‑1 (MQ=255)
                                                                                                                      ccTCGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTaa                <  1:444224/139‑1 (MQ=255)
                                                                                                                         cGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATc                                                                                               >  2:1248696/1‑57 (MQ=255)
                                                                                                                         cGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATc                                                                                               <  1:1248696/57‑1 (MQ=255)
                                                                                                                         cGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACtg             >  2:138165/1‑139 (MQ=255)
                                                                                                                         cGCTACGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACtg             >  1:165170/1‑139 (MQ=255)
                                                                                                                             aCGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGa                                                                                                   <  2:1475635/49‑1 (MQ=255)
                                                                                                                             aCGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGa                                                                                                   >  1:1475635/1‑49 (MQ=255)
                                                                                                                             aCGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACtggtgg         <  1:723956/139‑1 (MQ=255)
                                                                                                                             aCGCCAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACtggtgg         <  1:1382703/139‑1 (MQ=255)
                                                                                                                                 cAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTcccc                                           >  2:1167316/1‑101 (MQ=255)
                                                                                                                                 cAGCAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTcccc                                           <  1:1167316/101‑1 (MQ=255)
                                                                                                                                    cAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGa                                                                                                   <  1:245385/42‑1 (MQ=255)
                                                                                                                                    cAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGa                                                                                                   >  2:245385/1‑42 (MQ=255)
                                                                                                                                    cAAGAGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACTGGTGGCAGGaaa  >  1:863308/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GGTTTAGCGATTCGCGGCATTCGCCACGTAGCGGCTGGGCTGGATCTTTAAGGAAGCACGATGAAAGAAAAAACGATCATTATTGTCGGTGGCGGGCAAGCGGCGGCAATGGCTGCGGCCTCGCTACGCCAGCAAGGGTTCACCGGTGAGCTGCATCTGTTTTCCGATGAGCGACATCTTCCTTATGAACGACCTCCACTCTCGAAATCCATGTTGCTGGAAGATTCCCCGCAGTTACAGCAGGTGTTACCCGCTAACTGGTGGCAGGAAA  >  NC_000913/2671987‑2672257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A