Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F1 I1 R1	57	49.8	2216334	94.8%	2101084	113.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,594,256	(C)_8→9	pseudogene (3732/3861 nt)	yneO ←	pseudogene, AidA homolog

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,594,248	1	.	C	97.1%	241.1 / ‑0.4	69	pseudogene (3740/3861 nt)	yneO	pseudogene, AidA homolog
Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (34/32); total (36/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01

CGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTG  >  NC_000913/1594113‑1594379

cGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTGATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccc                                                                                                                                   <  1:745534/139‑1 (MQ=255)

   cacGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑cccccc                                                                                                                                >  1:200699/1‑139 (MQ=255)

      gCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccccccc‑cc                                                                                                                            <  1:10171/139‑2 (MQ=255)

       cAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccccccc‑cca                                                                                                                           <  1:434183/139‑3 (MQ=255)

          tGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTAAGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑CCCCCCCGCACGa                                                                                                                         >  1:686933/1‑139 (MQ=255)

           gCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGat                                                                                                                        <  1:607189/139‑1 (MQ=255)

                ccccAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCcg                                                                                                                   <  2:287944/139‑1 (MQ=255)

                   cAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCcgtcg                                                                                                                <  2:845272/139‑1 (MQ=255)

                   cAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCcgtcg                                                                                                                <  2:149803/139‑1 (MQ=255)

                     ggCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTa                                                                                                              <  1:1025150/139‑1 (MQ=255)

                          aaCGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTg                                                                                                         >  2:1034390/1‑139 (MQ=255)

                           aCGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGa                                                                                                        >  2:105026/1‑139 (MQ=255)

                                      aCCTGCCGTGGTGACCTTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATCTTAATGGCAGAGTAGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGa                                                                                             >  2:999279/1‑139 (MQ=255)

                                       ccTGCAGTGGTGACATTTCCCGACTACACACCGCTGTTATGGATATTAATGTGTTGCCTTGCCATATTAATGGCAGATTCGGAACCGAAACCAATTCC‑‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                            <  2:626613/139‑1 (MQ=255)

                                       ccTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                            <  1:105026/139‑1 (MQ=255)

                                         tGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATc                                                                                          <  1:475988/139‑1 (MQ=255)

                                               ggtgACATTTCCCGACATCACACCGCTGTGATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                    <  1:1034390/139‑1 (MQ=255)

                                                gtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTACTGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTa                                                                                   >  1:626613/1‑139 (MQ=255)

                                                  gACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAag                                                                                 <  1:968724/139‑1 (MQ=255)

                                                   aCATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAaga                                                                                >  2:374923/1‑139 (MQ=255)

                                                         cccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgg                                                                          <  2:200699/139‑1 (MQ=255)

                                                          ccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATAGTAAGGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGa                                                                         >  2:468013/1‑139 (MQ=255)

                                                                    acCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAcc                                                               <  1:468013/139‑1 (MQ=255)

                                                                      cGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                            >  2:571807/1‑108 (MQ=255)

                                                                      cGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                            <  1:571807/108‑1 (MQ=255)

                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TCCCCCCCCC‑CCCGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGGTTCAGGATCCCGGTACCCAg                                                            >  2:721155/1‑139 (MQ=255)

                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGatat                                                                                                                      <  2:253609/80‑1 (MQ=255)

                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGatat                                                                                                                      >  1:253609/1‑80 (MQ=255)

                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGt                                                           >  1:793904/1‑139 (MQ=255)

                                                                        cTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGt                                                           >  1:735293/1‑139 (MQ=255)

                                                                         tGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TCCCCCCCCC‑CACGATATCCGTCGTACCCTGATATGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGt                                                           <  1:721155/139‑1 (MQ=255)

                                                                                   atTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATc                                                >  2:432855/1‑139 (MQ=255)

                                                                                   atTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccccccc                                                                                                                               <  2:73653/60‑1 (MQ=255)

                                                                                   atTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑ccccccc                                                                                                                               >  1:73653/1‑60 (MQ=255)

                                                                                    ttAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCa                                               <  2:735293/139‑1 (MQ=255)

                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac                                              <  1:864889/139‑1 (MQ=255)

                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac                                              >  2:539658/1‑139 (MQ=255)

                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac                                              >  2:443589/1‑139 (MQ=255)

                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac                                              >  1:402367/1‑139 (MQ=255)

                                                                                     tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTT‑TCACATCacc                                             >  2:516042/1‑139 (MQ=255)

                                                                                        tgtgTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgc                                           <  2:928884/139‑1 (MQ=255)

                                                                                        tgtgTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTT‑TCACATCaccgct                                          <  1:516042/139‑1 (MQ=255)

                                                                                         gtgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                          <  2:402367/139‑1 (MQ=255)

                                                                                          tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                    <  2:700384/96‑1 (MQ=255)

                                                                                          tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt                                                                                    >  1:700384/1‑96 (MQ=255)

                                                                                           gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac                                        >  2:86249/1‑139 (MQ=255)

                                                                                           gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac                                        <  2:133215/139‑1 (MQ=255)

                                                                                           gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctac                                        <  1:86249/139‑1 (MQ=255)

                                                                                            ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGa                                                                         >  1:880128/1‑105 (MQ=255)

                                                                                            ttGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGa                                                                         <  2:880128/105‑1 (MQ=255)

                                                                                               tcTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TG‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCACGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgctaccgct                                    >  1:680231/2‑139 (MQ=255)

                                                                                                    ccATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATAc                               >  1:1046785/1‑139 (MQ=255)

                                                                                                            aTGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                            <  1:933323/70‑1 (MQ=255)

                                                                                                            aTGGCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGaa                                                                                            >  2:933323/1‑70 (MQ=255)

                                                                                                              ggCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCg                                                                                         <  1:97607/71‑1 (MQ=255)

                                                                                                              ggCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCg                                                                                         >  2:97607/1‑71 (MQ=255)

                                                                                                              ggCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCAt                     >  1:924909/1‑139 (MQ=255)

                                                                                                              ggCAGAGTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCAt                     >  2:784882/1‑139 (MQ=255)

                                                                                                                 agagTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGTTACCGCTGATACTGTGCGTAATCGc                  >  1:761542/1‑139 (MQ=255)

                                                                                                                  gagTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc                 >  2:898361/1‑139 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGCTATCCGTCGTACCCTGATCCGCCGCGGAATCCTTGTTAAGAGCCAGTTTCCCGGTACCTAGTTTTGTTAGATCCCCGCTACCGCTGATTCtgtgtggagtcgtcc                >  2:35643/1‑128 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCcgtcg                                                                                                                >  2:229234/1‑43 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCcgtcg                                                                                                                <  1:229234/43‑1 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                          >  2:334581/1‑113 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgct                                          <  1:334581/113‑1 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGccc                >  2:1026443/1‑139 (MQ=255)

                                                                                                                   agTCGGAACCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGccc                >  2:211243/1‑139 (MQ=255)

                                                                                                                          aCCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg         >  2:127537/1‑139 (MQ=255)

                                                                                                                          aCCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg         <  2:924909/139‑1 (MQ=255)

                                                                                                                          aCCGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACg         <  2:793904/139‑1 (MQ=255)

                                                                                                                            cGAAAGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGCAATCGTTGTTAAGAGTCAGGATCGCGGTACCCAGTTTTGCCACATCACCGTTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCt       <  1:703924/139‑1 (MQ=255)

                                                                                                                              aaaGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc                 <  2:904797/127‑1 (MQ=255)

                                                                                                                              aaaGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGcc                 >  1:904797/1‑127 (MQ=255)

                                                                                                                              aaaGCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCGACCGCTGATAGTGTGCGTCATCGCCCAGCTACGCTCa     >  2:703924/1‑139 (MQ=255)

                                                                                                                                 gCAATT‑TC‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTg  <  1:999279/139‑1 (MQ=255)

CGACACGCAGTGCCCCCCCCAGGCATAACGTTCATATCACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATT‑T‑‑CCCCCCC‑CACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTACCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTG  >  NC_000913/1594113‑1594379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A