Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I2 R1
|
70 |
105.0 |
5244496 |
94.3% |
4945559 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
826,009 |
C→G |
V34L (GTG→CTG) |
ybhR ← |
putative ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 826,009 | 0 | C | G | 98.1%
| 375.1
/ ‑4.0
| 107 | V34L (GTG→CTG) | ybhR | putative ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (54/51); minor base T (1/1); total (55/52) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 107 total aligned reads displayed.
TGGGTCAGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCACCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCGATG > NC_000913/825912‑826102
|
tGGGTCAGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCt < 1:1283871/100‑1 (MQ=255)
ggTCAGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGa > 1:1200872/1‑100 (MQ=255)
cAGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAAtt < 1:1532315/100‑1 (MQ=255)
aGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTa < 2:210521/100‑1 (MQ=255)
aGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTa < 2:358331/100‑1 (MQ=255)
gCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAg < 1:497260/100‑1 (MQ=255)
tCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCa < 1:679299/100‑1 (MQ=255)
tCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCa > 2:1005334/1‑100 (MQ=255)
ccACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCAc > 1:2026257/1‑100 (MQ=255)
ccACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCAc > 1:1998189/1‑100 (MQ=255)
ccACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCAc > 1:2025435/1‑100 (MQ=255)
aCCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACgg > 2:482907/1‑100 (MQ=255)
aCCGAATGCTCGACGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGAGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACgg > 2:2495569/1‑100 (MQ=255)
ccGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACggg < 1:1414894/100‑1 (MQ=255)
ccGAATGCTCGCCGTCATCTTCATCGTGGATGGTGTTGGTGGCGTTAGTCACTGCCAGCGTGGCGGAGGACGGGAACAGGAGCATCTGAATTAGCACggg < 2:2335189/100‑1 (MQ=255)
aaTGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTaa > 1:1480013/1‑100 (MQ=255)
gCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAAt > 1:1676477/1‑100 (MQ=255)
gCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAAt > 1:195511/1‑100 (MQ=255)
cTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATc > 1:1527374/1‑100 (MQ=255)
cTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATc > 2:1805858/1‑100 (MQ=255)
tCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCa < 2:1513888/100‑1 (MQ=255)
cGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAg < 2:1109874/100‑1 (MQ=255)
gTTATCTTCATCGTAGATGGCGATGGTGGTGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCATCTGAATTAGCACGGGTAAAATCAGAATc > 1:931810/1‑100 (MQ=255)
gTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATc > 2:425851/1‑100 (MQ=255)
ttATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATcg < 2:200363/100‑1 (MQ=255)
ttATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATcg > 2:2193256/1‑100 (MQ=255)
tCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATcgcgc < 1:1837769/100‑1 (MQ=255)
tCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATcgcgc < 1:115632/100‑1 (MQ=255)
cTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATcgcgcg > 2:1241096/1‑100 (MQ=255)
ttCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGCACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCgg > 2:1109889/1‑100 (MQ=255)
ttCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCgg > 1:763998/1‑100 (MQ=255)
tCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCggg < 2:2139408/100‑1 (MQ=255)
tCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCggg < 2:36448/100‑1 (MQ=255)
cagcGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGt < 2:771228/97‑1 (MQ=255)
cATCGTAGATTGCGATGATGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCCCGGGTAAAATCAGAATCGCGCGGGt > 2:2040269/1‑100 (MQ=255)
aTCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGtt < 2:815963/100‑1 (MQ=255)
tCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGttt > 1:1798317/1‑100 (MQ=255)
cGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTg < 1:1342111/100‑1 (MQ=255)
gTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGc > 1:1306438/1‑100 (MQ=255)
aGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCgg < 2:650629/100‑1 (MQ=255)
tGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTc > 2:560287/1‑100 (MQ=255)
tGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTc > 1:946088/1‑100 (MQ=255)
cGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTcgcg > 2:1877025/1‑100 (MQ=255)
cGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTcgcg > 1:382842/1‑100 (MQ=255)
gATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCgcgc < 2:1894588/100‑1 (MQ=255)
acggtggCGTTAGTCACTTCCAGCGTGGCGCCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCgca < 2:460691/98‑1 (MQ=255)
tggtggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCgcag < 2:1245056/100‑1 (MQ=255)
tggtggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCgcag < 2:2305664/100‑1 (MQ=255)
ggtggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCgcagc < 2:333608/100‑1 (MQ=255)
gtggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCgcagca < 1:1327288/100‑1 (MQ=255)
tggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGATTTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCaa > 1:2562870/1‑100 (MQ=255)
ggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAAc > 1:2025691/1‑100 (MQ=255)
ggCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAAc > 2:2259016/1‑100 (MQ=255)
ggCGGTAGTCACGTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAAc < 2:636450/100‑1 (MQ=255)
cGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGa > 2:1337860/1‑100 (MQ=255)
cGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAACCGCGCGGGTTTGCGGTTCGCGCAGCAACGa > 2:2087307/1‑100 (MQ=255)
gTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCGCGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGAc > 1:46881/1‑100 (MQ=255)
gTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGAc < 1:714069/100‑1 (MQ=255)
gTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGAc > 1:60818/1‑100 (MQ=255)
gTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGAc > 2:1689318/1‑100 (MQ=255)
ttAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACt < 1:1450955/100‑1 (MQ=255)
tAGTCACTTCCAGGGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTg > 2:1096429/1‑100 (MQ=255)
tAGTCACTTCCAGCGTGGCGGCGAACTGGAACAGGATCAGCTGAATTAGCACGGGCAAAATGAGAATCACGCGGGTTTGCGGTTCGCGCATCAACGGCTg < 2:1943502/100‑1 (MQ=255)
aGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCCGCAACGACTGc > 2:835035/1‑100 (MQ=255)
gTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCa < 2:1802130/100‑1 (MQ=255)
gTCACTTCCAGCGTGCCGGCGAACGGGAACAGGATCAGCTAAATTGGCACGGGTAAAGTCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCa > 1:2296248/1‑100 (MQ=255)
cACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAAc > 1:2231863/1‑100 (MQ=255)
cACTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGCTCGCGCAGCAACGACTGCAAc > 2:1167888/1‑100 (MQ=255)
cTTCCAGCGTGGCGGCGAACGGGAACAGTATCAGCTGAATAAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAActc < 2:310242/100‑1 (MQ=255)
cTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAActc > 2:617705/1‑100 (MQ=255)
cTTCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTCAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAActc > 2:2432071/1‑100 (MQ=255)
tCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCtt < 2:1144618/100‑1 (MQ=255)
tCCAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGT‑AAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCttt > 1:806592/1‑100 (MQ=255)
ccAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCttt > 1:318378/1‑100 (MQ=255)
cAGCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTg < 1:2083896/100‑1 (MQ=255)
gCGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCg < 1:540649/100‑1 (MQ=255)
cGTGGCGGCGAACGGGAACAGGATCAGGTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCgg < 2:1101512/100‑1 (MQ=255)
cGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCgg > 1:105067/1‑100 (MQ=255)
cGTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCgg < 2:2346470/100‑1 (MQ=255)
gTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGa < 2:1136259/100‑1 (MQ=255)
gTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGa > 2:59427/1‑100 (MQ=255)
gTGGCGGCGAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTGGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGa < 2:741851/100‑1 (MQ=255)
gcgAACGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACg < 1:505876/100‑1 (MQ=255)
aaCGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTcc > 2:1658089/1‑100 (MQ=255)
aaCGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTcc < 2:326444/100‑1 (MQ=255)
aaCGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTcc < 1:1550677/100‑1 (MQ=255)
aaCGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTcc < 1:1994884/100‑1 (MQ=255)
aCGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCa < 1:1465824/100‑1 (MQ=255)
aCGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCa > 2:712480/1‑100 (MQ=255)
cGGGAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCAt < 2:1181033/100‑1 (MQ=255)
gggAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATa > 2:846026/1‑100 (MQ=255)
ggAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATaa > 2:2525595/1‑100 (MQ=255)
ggAACAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATaa > 1:560183/1‑100 (MQ=255)
gAACAGGATCAGCCGAATTAGCACGCGTAAAACCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAg < 2:561842/100‑1 (MQ=255)
aCAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCg > 1:919847/1‑100 (MQ=255)
cAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCGa > 1:720965/1‑100 (MQ=255)
cAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCGa < 1:2084095/100‑1 (MQ=255)
cAGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTGGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCGa > 1:782709/1‑100 (MQ=255)
aGGATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCGAt < 1:2615303/100‑1 (MQ=255)
ggATCAGCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAGCGTCCATAAGCGATg > 2:416061/1‑100 (MQ=255)
|
TGGGTCAGCTCCACCGAATGCTCGCCGTTATCTTCATCGTAGATGGCGATGGTGGCGTTAGTCACTTCCAGCGTGGCGGCGAACGGGAACAGGATCACCTGAATTAGCACGGGTAAAATCAGAATCGCGCGGGTTTGCGGTTCGCGCAGCAACGACTGCAACTCTTTGCGGATTAACGTCCATAAGCGATG > NC_000913/825912‑826102
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
