Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I51 R1
|
223 |
69.9 |
1534784 |
95.1% |
1459579 |
214.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,921,059 |
T→G |
P279P (CCT→CCG) |
rsmF → |
16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,921,059 | 0 | T | G | 98.2%
| 177.9
/ NA
| 54 | P279P (CCT→CCG) | rsmF | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (30/23); total (30/24) |
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCGTAAAGATCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCTGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGATG > NC_000913/1920830‑1921279
|
tgCGTAAAGATCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGc < 2:409463/235‑1 (MQ=255)
tCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAATAGACTTACCCCGACGCAGTAGAGATTTTACCACTTGGCGATCTCTTCCCGGGTGcaaccaa > 1:200928/1‑231 (MQ=255)
tCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTTCCGGGTGcaaacaa > 1:76392/1‑231 (MQ=255)
tCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGcaaacaa > 1:474642/1‑231 (MQ=255)
cGATGCGCTAAAAAGCTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGa < 1:700698/236‑1 (MQ=255)
cGATGCGATAAAACACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACAGAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGGCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAgcg < 2:314297/232‑1 (MQ=255)
gATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGAc < 2:474642/236‑1 (MQ=255)
aTGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGAcc > 1:264976/1‑236 (MQ=255)
gcgcTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGa > 2:191223/1‑232 (MQ=255)
gcgcTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGa < 1:191223/232‑1 (MQ=255)
gcTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGCTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGTTGACCgaag > 1:156700/1‑236 (MQ=255)
gaataCTGGTCACCAGAAATCAATCAGTGAATCGCATCTACACAACGGGATCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAgg < 2:155128/232‑1 (MQ=255)
gTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTCCCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGACCTGACCGAAGAAGGCttt > 1:612985/1‑232 (MQ=255)
cAGAAAGCAATCAGGAACTCGCAGATACCCAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGt < 2:15107/235‑1 (MQ=255)
aGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGCAGAAGGATTCTTGCCGGGTTTccc > 2:751155/1‑236 (MQ=255)
tCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTATGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTcccc > 2:700910/1‑231 (MQ=255)
cAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCca‑c < 1:700910/232‑1 (MQ=255)
ggAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCCAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAAttt > 2:642701/1‑236 (MQ=255)
cGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGa < 2:594259/234‑1 (MQ=255)
aGCTGCCCAACGTGAGCTTATCGACACAGCCTTTCATGCATTCCGGCCTGTTGGTACGCTGGTTTACTCGACCTGTACCCTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTGCCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCg < 2:200928/236‑1 (MQ=255)
caACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGctt < 1:280702/236‑1 (MQ=255)
cGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGcttctt > 1:17321/1‑236 (MQ=255)
ggAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCttcttc > 1:308082/1‑235 (MQ=255)
aaaaggacttttCATTCATGACGTCCTGGTGATACGCTGGTTTACTCGACCTGGACCTTAAACCAGGAAGAAAACGAATCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTGACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCGCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCt < 2:76392/227‑1 (MQ=255)
aGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCca‑c < 1:678561/196‑1 (MQ=255)
aGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCca‑c > 2:678561/1‑196 (MQ=255)
gcgcCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGt > 2:614616/1‑236 (MQ=255)
cgcCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGt > 1:646219/1‑235 (MQ=255)
tttCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTa < 1:642701/232‑1 (MQ=255)
ttACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGc > 2:155126/1‑233 (MQ=255)
tACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGcaaac < 1:307590/140‑1 (MQ=255)
tACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGcaaac > 2:307590/1‑140 (MQ=255)
ccGTCCTGGTGGTACGCGGTTTGACTCGACCTGTACCTTAACCCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTCCCCCGACGCAGTAGAGTTTTTCCCACGTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑AGAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGAtt < 2:706740/234‑1 (MQ=255)
tggtggTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTTAGGCGATTTCCGcc > 2:357837/1‑235 (MQ=255)
aCGCTGTTTTACTGAACCTGTACCTTAAACCAGGAAGAAACAGAAGCCGTTT‑GCCTTGGGCTGAAAGAGACTTCCCCCGACGCAGTAGATTTTTTACCACTTGGCGATCTCTTCCCGGGTACAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGCCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCg < 2:308082/235‑1 (MQ=255)
aCGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCg > 1:40823/1‑235 (MQ=255)
cTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCACGCCTTACCCGcccc > 1:240472/1‑236 (MQ=255)
gtgTTTACTCGA‑CTGTACCCTAAACCAAGAAAAAAACCGAGCCCTTTGGCCTGTGGCTAAAGGAGCCTTCCCCCGACACATTAGAGTTTTTACCACTTGGCTATCTCTTCCGGGGTGAAAACAAAGCGCTGACCGAAGAAGGCTTTTTTCATTTTTTCCCA‑AAAATTTACGCCTGCAAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGcccc < 2:637278/233‑1 (MQ=255)
gTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGTCCCCa > 1:637278/1‑235 (MQ=255)
tACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATa > 1:476577/1‑236 (MQ=255)
actcaccttGTCCCTAAACCCGGGAAGAAACCGAGCCGGTTC‑GCCGGTGCCTGAAGTGGCTTTCCCCCGACGAAGTGGGGTTTTTCCCACTTGGCGATCTCTCCCGGGTTGCAAAAAAAGCGCTGACGAAAGAAGGCTTTTTGCATGTTTTCCCA‑AAATTTTCCGACTGCAAGGGTTTCTTCGTTGCTCGTCTGCGAAAACCTCAGGCGATTCCCGCCTTACCCGCCCCCAAATAc < 2:17321/228‑1 (MQ=255)
ccTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTc > 1:590795/1‑236 (MQ=255)
aaaCCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTATCCGCCCCCAAATCCAAAGTCGGTAATTTTc > 1:192894/1‑236 (MQ=255)
aaacCGAAGCCTTTT‑GCCTGGGGCTAAAAGGGCCTAACCCCGCCGCAGTGAGGTTTTCACCATTTGGCGATCTCTTCCGGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCTTGTTTTCCCA‑AAAATTTCCGCCTGCGAGGGCTTCTTCGTTGCTCGTCGGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGcc < 2:192894/234‑1 (MQ=255)
aGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAg > 1:393142/1‑236 (MQ=255)
tgGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGCAAGATCGCGAAGCCgg > 1:390689/1‑236 (MQ=255)
gtACCACGACGCAGTGGAGTTTTTACCACTTGGCTATCTCTTCCCGGGTGAAAACAAGCCGTTGACCGAAGAAGGTTTTTTGCATTTTTTCCCA‑CAAATTTCCGACTGCGAAGCCTTCTTCGTTGCTCGTCTGCGAAAAACTCAGGCGATCCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGt < 2:556924/231‑1 (MQ=255)
tACCACGACTCATTAAATTTTATCCCACTTTCCTATCTCTTCCCTGCTCCAACCAAACCCATCACAAAACAATCCTTTTTGCAT‑TTTTCCCACCAAATTTACGACTCCCAATCTTTCTTCTTTCATCCTCTTCTTAAAACTCATCCATTTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTTAAAGATCGCGAAGCTGGACAAATTCGTCAggc < 2:156700/236‑1 (MQ=255)
tAGAGTTTTTACCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGgtg > 2:734957/1‑234 (MQ=255)
aCCACTTGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAAca > 1:707433/1‑235 (MQ=255)
aCTTGGCTATCTCTCCCCGGTTGCAAACAAAGCCCTGACCGAAGAAGGCTTTTTCCTTTTTTCCCCA‑AAAATTACCGATGGCAAGGGTTTCTTCGTTCCTCGTTTGCTAAAACCTCGGGCGTTTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTggg < 2:393142/236‑1 (MQ=255)
ttGGCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGAt > 2:727468/1‑236 (MQ=255)
ggCGATCTCTTCCCGGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGATg > 1:219180/1‑235 (MQ=255)
tctcTTCCCGGGTCCAAAAAAGGCGCTGACCGAAGAAGGCTTTTTGCATGTTTCCCCA‑AAAATTTACGCCTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTAAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGt < 2:45254/144‑1 (MQ=255)
|
TGCGTAAAGATCCCGATGCGCTAAAAAACTGGTCACCAGAAAGCAATCAGGAAATCGCAGCTACACAACGGGAGCTTATCGACAGCGCCTTTCATGCATTACGTCCTGGTGGTACGCTGGTTTACTCGACCTGTACCTTAAACCAGGAAGAAAACGAAGCCGTTT‑GCCTGTGGCTGAAAGAGACTTACCCCGACGCAGTAGAGTTTTTACCACTTGGCGATCTCTTCCCTGGTGCAAACAAAGCGCTGACCGAAGAAGGCTTTTTGCATGTTTTCCCA‑CAAATTTACGACTGCGAAGGCTTCTTCGTTGCTCGTCTGCGTAAAACTCAGGCGATTCCCGCCTTACCCGCCCCCAAATACAAAGTCGGTAATTTTCCGTTCAGCCCGGTGAAAGATCGCGAAGCTGGACAAATTCGTCAGGCGGCTACAGGTGTTGGCTTAAACTGGGATG > NC_000913/1920830‑1921279
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
