Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I52 R1 239 220.4 11079197 93.2% 10325811 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,741,263 A→C intergenic (+141/‑150) ydhC → / → cfa putative arabinose efflux transporter/cyclopropane fatty acyl phospholipid synthase, SAM‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,741,2630AC99.5% 744.6 / ‑4.3 208intergenic (+141/‑150)ydhC/cfaputative arabinose efflux transporter/cyclopropane fatty acyl phospholipid synthase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base C (101/106);  total (101/107)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01

Only 100 of 209 total aligned reads displayed.

TTGTATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTATGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCAA  >  NC_000913/1741166‑1741359
                                                                                                 |                                                                                                
ttgtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTg                                                                                                <  1:1030789/100‑1 (MQ=255)
ttgtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTg                                                                                                <  2:2643459/100‑1 (MQ=255)
ttgtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTg                                                                                                <  1:3383905/100‑1 (MQ=255)
  gtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGa                                                                                              >  2:630344/1‑100 (MQ=255)
  gtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGa                                                                                              <  2:2857422/100‑1 (MQ=255)
  gtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGa                                                                                              >  2:4451684/1‑100 (MQ=255)
  gtATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGa                                                                                              >  1:1889502/1‑100 (MQ=255)
    aTGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATTTTTTTTTTTTTTTTTTTTTTGATCGTTCCCGACTCACTCTGGATa                                                                                            >  2:1606773/1‑100 (MQ=255)
      gATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGt                                                                                          <  1:92426/100‑1 (MQ=255)
      gATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGt                                                                                          <  2:2508027/100‑1 (MQ=255)
       aTTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTc                                                                                         <  1:4729285/100‑1 (MQ=255)
       aTTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTc                                                                                         <  1:415050/100‑1 (MQ=255)
       aTTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTc                                                                                         >  2:3630090/1‑100 (MQ=255)
        ttGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCa                                                                                        >  2:3062463/1‑100 (MQ=255)
         tGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCAt                                                                                       >  1:3089364/1‑100 (MQ=255)
          naaaTTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCAtt                                                                                      >  1:1146285/2‑100 (MQ=255)
          gAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCTGACTCACTCTGGATAGTCAtt                                                                                      >  2:1851593/1‑100 (MQ=255)
          gAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCAtt                                                                                      >  2:4724194/1‑100 (MQ=255)
           aaaTGAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCAttt                                                                                     >  2:4639740/1‑100 (MQ=255)
             nttAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCg                                                                                   >  1:4628643/2‑100 (MQ=255)
              ttAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCgg                                                                                  <  1:1826958/100‑1 (MQ=255)
              ttAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCgg                                                                                  <  2:3801594/100‑1 (MQ=255)
               tAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGc                                                                                 <  2:2239479/100‑1 (MQ=255)
                 gCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCaa                                                                               <  1:1502555/100‑1 (MQ=255)
                   ggCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTATTTTTTTTTTATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAgg                                                                             >  2:2577845/1‑100 (MQ=255)
                   ggCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAgg                                                                             >  1:1103255/1‑100 (MQ=255)
                    gCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGCTCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAggg                                                                            <  2:1498844/100‑1 (MQ=255)
                    gCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAggg                                                                            >  2:1323034/1‑100 (MQ=255)
                     ccTATACTACTTTCGAGTTGTTAACGCTACTATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGt                                                                           <  2:1751756/100‑1 (MQ=255)
                        ataCTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTtcc                                                                        <  1:522551/100‑1 (MQ=255)
                         taCTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGGCTTAATCTGTATAATAATTTCGGCAAGGGTgcct                                                                       >  2:5439323/1‑100 (MQ=255)
                           cTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTtcctcc                                                                     <  1:3824676/100‑1 (MQ=255)
                           cTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTtcctcc                                                                     <  1:3988714/100‑1 (MQ=255)
                           cTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTtcctcc                                                                     >  1:278145/1‑100 (MQ=255)
                              aTTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCttt                                                                  >  2:1525646/1‑100 (MQ=255)
                              aTTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCttt                                                                  <  1:423284/100‑1 (MQ=255)
                                 tCGAGTTGTTAAAGCTTCGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCTCTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTccn                                                               <  1:4476359/100‑2 (MQ=255)
                                  cGAGTTGTTCCAGCTACGATAAATATTATGTTCTTACGGGGACAGCATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCct                                                              <  1:257811/100‑1 (MQ=255)
                                  cGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCct                                                              >  1:2259659/1‑100 (MQ=255)
                                   gAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCctc                                                             >  1:2940670/1‑100 (MQ=255)
                                   gAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCctc                                                             <  1:3091203/100‑1 (MQ=255)
                                    aGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCctct                                                            <  2:4297720/100‑1 (MQ=255)
                                     gttgttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTg                                                           >  1:1286535/1‑100 (MQ=255)
                                      ttgttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGt                                                          <  2:1780775/100‑1 (MQ=255)
                                      ttgttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGt                                                          <  2:818087/100‑1 (MQ=255)
                                       tgttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGtt                                                         >  1:3727601/1‑100 (MQ=255)
                                       tgttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGtt                                                         >  1:5327021/1‑100 (MQ=255)
                                       tgttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGtt                                                         >  1:3429734/1‑100 (MQ=255)
                                        gttAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTc                                                        <  1:161978/100‑1 (MQ=255)
                                          tAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTa                                                      >  2:2433493/1‑100 (MQ=255)
                                          tAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTa                                                      >  2:2935783/1‑100 (MQ=255)
                                          tAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTa                                                      >  2:1663383/1‑100 (MQ=255)
                                          tAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTa                                                      >  1:2957865/1‑100 (MQ=255)
                                           aaaGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTAc                                                     <  2:1139484/100‑1 (MQ=255)
                                            aaGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACg                                                    >  1:1425787/1‑100 (MQ=255)
                                             aGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGt                                                   <  2:2252838/100‑1 (MQ=255)
                                             aGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGt                                                   >  2:3828154/1‑100 (MQ=255)
                                              gCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTc                                                  >  1:635608/1‑100 (MQ=255)
                                               cTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCg                                                 <  2:3190198/100‑1 (MQ=255)
                                                tACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCgg                                                >  2:5066291/1‑100 (MQ=255)
                                                  cGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGAt                                              >  1:750347/1‑100 (MQ=255)
                                                   gATAACTATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGAtt                                             <  1:5268968/100‑1 (MQ=255)
                                                     tAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATtat                                           >  2:3775726/1‑100 (MQ=255)
                                                     tAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATtat                                           <  2:746955/100‑1 (MQ=255)
                                                      aaaTATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATtata                                          <  1:2862983/100‑1 (MQ=255)
                                                      aaaTATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATtata                                          <  2:676891/100‑1 (MQ=255)
                                                       aaTATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAg                                         <  2:4092147/100‑1 (MQ=255)
                                                       aaTATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAg                                         <  1:1028395/100‑1 (MQ=255)
                                                          attatGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACt                                      >  1:2240917/1‑100 (MQ=255)
                                                           ttatGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTc                                     >  1:2136635/1‑100 (MQ=255)
                                                           ttatGTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTATACGTCGGATTATAGACTc                                     >  2:4912062/1‑100 (MQ=255)
                                                               gTTTTTACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCgg                                 >  2:2311012/1‑100 (MQ=255)
                                                                 ttttACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGtt                               <  2:275490/100‑1 (MQ=255)
                                                                    tACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGttttt                            >  2:1458172/1‑100 (MQ=255)
                                                                    tACGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGttttt                            <  1:4529597/100‑1 (MQ=255)
                                                                     aCGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGtttttt                           >  2:1813725/1‑100 (MQ=255)
                                                                      cGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTc                          >  1:5411104/1‑100 (MQ=255)
                                                                      cGGGGACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTc                          >  1:1897047/1‑100 (MQ=255)
                                                                        gggACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTg                        >  1:485011/1‑100 (MQ=255)
                                                                        gggACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTg                        <  2:2912996/100‑1 (MQ=255)
                                                                        gggACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTg                        >  1:3413142/1‑100 (MQ=255)
                                                                        atctcAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGGCTCGCGGTTTTTTCTg                        <  1:2035338/96‑1 (MQ=255)
                                                                          gACAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCg                      <  2:5327505/100‑1 (MQ=255)
                                                                            cAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGGCTCGCGGTTTTTTCTgagat                    >  2:2013508/1‑96 (MQ=255)
                                                                            cAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCggg                    >  2:1067075/1‑98 (MQ=255)
                                                                            cAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCgag                    <  1:3967299/100‑1 (MQ=255)
                                                                            cAGGATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCgag                    <  2:5313366/100‑1 (MQ=255)
                                                                               gATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGTGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGAtc                 >  2:1383694/1‑99 (MQ=255)
                                                                               gATCGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGAtt                 <  2:2105750/100‑1 (MQ=255)
                                                                                  cGTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTtct              >  1:4248441/1‑100 (MQ=255)
                                                                                   gTTCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTtctc             <  1:3640258/100‑1 (MQ=255)
                                                                                     tCCCGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTcac           <  2:1269528/100‑1 (MQ=255)
                                                                                      cccGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTcaca          <  1:2467497/100‑1 (MQ=255)
                                                                                      cccGACTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATGATAGACTCGCGGTTTTTTCTGCGAGATTTCTcaca          >  2:5413647/1‑100 (MQ=255)
                                                                                           cTCACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCCGTTTTTCCTGCGAGATTTCTCACAAAGcc     >  1:5078312/1‑100 (MQ=255)
                                                                                             cACTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCa   <  1:4495982/100‑1 (MQ=255)
                                                                                              aCTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCaa  >  2:336649/1‑100 (MQ=255)
                                                                                              aCTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCaa  >  2:455886/1‑100 (MQ=255)
                                                                                              aCTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCaa  >  2:588218/1‑100 (MQ=255)
                                                                                              aCTCTGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCaa  >  2:1259343/1‑100 (MQ=255)
                                                                                                 |                                                                                                
TTGTATGATTGAAATTAGCGGCCTATACTAATTTCGAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTATGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCAA  >  NC_000913/1741166‑1741359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A