Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I52 R1
|
239 |
220.4 |
11079197 |
93.2% |
10325811 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,288,561 |
(C)7→8 |
pseudogene (354/2525 nt) |
yejO ← |
pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,288,554 | 1 | . | C | 93.8%
| 526.3
/ 28.1
| 160 | pseudogene (361/2525 nt) | yejO | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base . (7/3); new base C (80/70); total (87/73) |
| Fisher's exact test for biased strand distribution p-value = 3.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 177 total aligned reads displayed.
GTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGT > NC_000913/2288455‑2288648
|
gttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑g‑g < 2:4872847/100‑1 (MQ=255)
gttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑g‑g < 1:148648/100‑1 (MQ=255)
tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAACTCCCCCCT‑CTTTAACCTCCAGTATTCCTTCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccc < 2:2251759/100‑1 (MQ=255)
tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccc < 1:2624273/100‑1 (MQ=255)
tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccc > 1:775580/1‑100 (MQ=255)
tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAAACTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccc > 2:867832/1‑100 (MQ=255)
tAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCGCCCT‑CTTTAACCTCCAGTAGTCCTCCGTTTTCGATAGCGACAAAGAT‑G‑T‑‑c‑c‑ccccc < 2:4532930/100‑1 (MQ=255)
tAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccccn < 1:4440920/100‑2 (MQ=255)
tAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccccc < 1:2972760/100‑1 (MQ=255)
aaTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑cccccc < 2:2301597/100‑2 (MQ=255)
aaTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACATCCAGCAGTCCTCCCTTTACGATAGCGACAAAGAC‑G‑G‑‑c‑c‑cccccc > 1:5211187/1‑99 (MQ=255)
aTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTTTTTATCTTCAAAAAC‑G‑G‑‑c‑c‑cccccca > 2:791652/1‑98 (MQ=255)
aGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑c‑c‑ccccccatc > 1:4262509/1‑96 (MQ=255)
gCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTCGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑C‑C‑CCCCCATCtt > 2:1816110/1‑100 (MQ=255)
cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCttttt > 1:4074504/1‑100 (MQ=255)
gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATCGCGACAAAGTCTG‑C‑‑C‑C‑CCCCCATCttcttc > 2:1729296/1‑100 (MQ=255)
gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTc < 1:638745/100‑1 (MQ=255)
ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCa < 1:30694/100‑1 (MQ=255)
cTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCaa > 1:5376551/1‑100 (MQ=255)
tGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAAc < 2:4952889/100‑1 (MQ=255)
tGCTTTCCGATCTACCGCTATTGCAATTCCCCCCT‑CTTTCACCTCCAGTAGTCCTCCCTTTTCGATAGCGTCAAATAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAAc < 1:5206797/100‑1 (MQ=255)
ngCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAAc > 1:4447781/2‑100 (MQ=255)
gCTTTCTGTCCTCCCGCAAA‑GGAAATCCCCCCTCCTTTACCCTCCAGTATTCCCCCCTTTTCGATAGGGAAAAAGAG‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACg < 2:3619509/100‑1 (MQ=255)
gCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCACCg > 1:968318/1‑100 (MQ=255)
gCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACg > 2:2162118/1‑100 (MQ=255)
tttCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGAt > 2:4574133/1‑100 (MQ=255)
ttCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGAtt < 2:4416830/100‑1 (MQ=255)
tGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAg > 1:4853252/1‑100 (MQ=255)
gATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAgc > 1:2247780/1‑100 (MQ=255)
aTCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAgcg > 2:5021004/1‑100 (MQ=255)
tCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAACGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAgcgc > 2:1087805/1‑100 (MQ=255)
cTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAAcgcc < 1:3880558/100‑1 (MQ=255)
aCCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGcgcccg > 1:4126300/1‑100 (MQ=255)
ccGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGcgcccgc > 2:4267306/1‑100 (MQ=255)
ccGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACCATTACGcgcccgc > 2:4744901/1‑100 (MQ=255)
caaatgcaaatCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt > 2:2699439/1‑100 (MQ=255)
aatgcaaatCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTa > 2:3154424/1‑100 (MQ=255)
aatgcaaatCCCCCCT‑CTTTAACCGCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GCCC‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCttt < 2:4852931/100‑1 (MQ=255)
ncaaatCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCGGCCGTTAATc > 1:4452904/2‑100 (MQ=255)
caaatCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg > 1:3598932/1‑100 (MQ=255)
aatCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg < 1:3294911/100‑1 (MQ=255)
ccccccT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTa > 1:1140089/1‑100 (MQ=255)
ccccT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATTTTTTTCAACGATTACGCGCCCGCCTTTAATCGTGGTAtg > 1:3967757/1‑99 (MQ=255)
ccccT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATc < 1:4654034/100‑1 (MQ=255)
ccccT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATc > 1:4008810/1‑100 (MQ=255)
cccT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCa > 1:3122597/1‑100 (MQ=255)
t‑ctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCTACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc < 2:4634412/100‑1 (MQ=255)
t‑ctTAACCCTCCAGTAGACCTCCCTTTTCGATAGCGAAAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc < 2:2791369/100‑1 (MQ=255)
ctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg > 1:4533395/1‑100 (MQ=255)
tttAAACTCCAGTAGTCCTCCTTTTTCAATAACGACAAAGTC‑G‑T‑‑CTC‑GCCCCATTTTTTTCAACGATTAAACGCCCGCCTTTAATCGTCGTATCATTCGc > 2:327843/1‑100 (MQ=255)
tAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg > 1:1891603/1‑100 (MQ=255)
aaCCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑GAC‑‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc < 2:4760059/100‑1 (MQ=255)
aaCCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc > 1:4776763/1‑100 (MQ=255)
aCCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGGATCATTCGCTgcg > 1:2136679/1‑100 (MQ=255)
aCCTCCAGTAGTCCCCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcg < 2:3126199/100‑1 (MQ=255)
ccTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTACTCGTGGTATCATTCGCTgcgc > 2:2108890/1‑100 (MQ=255)
ccTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc > 1:1670656/1‑100 (MQ=255)
ccTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc > 2:3693913/1‑100 (MQ=255)
ccTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGcc < 1:1836764/100‑1 (MQ=255)
cTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGcc < 1:2500096/100‑1 (MQ=255)
cTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATAATTCGCTGCGcc < 2:3662837/100‑1 (MQ=255)
tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa < 1:1014818/100‑1 (MQ=255)
tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑C‑CACACCCATCTTTTTCAACGATTAAGCGCCGGCCTTTAATCGTGGTATCATTCGCTGCGCCa < 2:4410500/100‑1 (MQ=255)
agtagtCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa < 2:1706479/100‑1 (MQ=255)
gtagtCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaaa < 2:3447882/100‑1 (MQ=255)
gtagtCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaaa < 2:2319491/100‑1 (MQ=255)
gtagtCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCAACTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaaa < 2:2985558/100‑1 (MQ=255)
atctctccCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc < 1:3475252/96‑1 (MQ=255)
agtCCTCCCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc < 1:1209988/100‑1 (MQ=255)
agtCCTCCCTTTTCAATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAtttacc < 2:3482586/100‑6 (MQ=255)
cctccCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGt < 1:2648791/100‑1 (MQ=255)
ctccCTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAccagat > 2:3442977/1‑96 (MQ=255)
cccTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCGTTCGCTGCGCCATAAACCTGTAGc < 1:388531/100‑1 (MQ=255)
cccTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc > 1:1314074/1‑100 (MQ=255)
cccTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc < 1:1451637/100‑1 (MQ=255)
cccTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc > 1:4991283/1‑100 (MQ=255)
cTTTTCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac > 2:3398383/1‑100 (MQ=255)
cTTTTCGATAGCGACAAAGAC‑G‑G‑‑C‑CGCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTCTAGcac > 1:2902904/1‑100 (MQ=255)
gtacGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac < 2:3931599/97‑1 (MQ=255)
ttCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACAcc < 1:1104169/100‑1 (MQ=255)
tCGATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa < 2:1309069/100‑1 (MQ=255)
gATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCatt > 2:2091433/1‑100 (MQ=255)
gATAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCatt > 1:511450/1‑100 (MQ=255)
aTAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCatta < 1:3897894/100‑1 (MQ=255)
aTAGCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCatta > 1:5504952/1‑100 (MQ=255)
gCGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTg > 2:2698171/1‑100 (MQ=255)
cGACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGa > 1:945374/1‑100 (MQ=255)
gACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTCGCACACCATTATTGAg < 2:5312900/100‑1 (MQ=255)
gACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAg < 2:4710880/100‑1 (MQ=255)
gACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAg < 2:3845283/100‑1 (MQ=255)
gACAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCATTAATCGTGGTATCATTTGCTGCGCCATAAACCTGTAGCACACCATTATTGAg > 1:1603769/1‑100 (MQ=255)
gACAAAGAC‑G‑GC‑C‑C‑CCCCCATCCTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAg < 2:248438/100‑1 (MQ=255)
aCAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGTTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc < 1:4887256/100‑1 (MQ=255)
aCAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc < 1:1315472/100‑1 (MQ=255)
aCAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc > 2:1503221/1‑100 (MQ=255)
cAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTTGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg < 2:5100213/100‑1 (MQ=255)
cAAAGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg > 2:2573201/1‑100 (MQ=255)
aaaGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGt > 2:5335394/1‑100 (MQ=255)
aaGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTTGCACACCATTTTTGAGCGTa > 1:201757/1‑100 (MQ=255)
aaGAC‑G‑GC‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa < 2:5415722/100‑1 (MQ=255)
|
GTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCT‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGAC‑G‑G‑‑C‑C‑CCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGT > NC_000913/2288455‑2288648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
