Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I52 R1 239 220.4 11079197 93.2% 10325811 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,323,353 T→G intergenic (+102/‑94) atoC → / → atoD fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,323,3530TG98.0% 683.0 / 3.0 199intergenic (+102/‑94)atoC/atoDfused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base T (2/2);  new base G (85/108);  total (89/110)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.02e-01

Only 100 of 200 total aligned reads displayed.

CAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATG  >  NC_000913/2323255‑2323449
                                                                                                  |                                                                                                
cAAAGCGTGCTATGCAGAAATTTGCACAGTGCTCAATTTTCTGCATAGCCGCTCATTCTCCTTACACATCCCCATCCAATTTCTCCCTTCATATTCAAtt                                                                                                 <  2:4429202/100‑1 (MQ=255)
    agcggCTATGCAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGtt                                                                                             >  2:3424781/5‑100 (MQ=18)
     cgtGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTa                                                                                            <  1:3813932/98‑1 (MQ=255)
     cTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTa                                                                                            <  2:4363089/100‑1 (MQ=255)
        gCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAAt                                                                                         <  2:186179/100‑1 (MQ=255)
        gCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAAt                                                                                         <  2:3511093/100‑1 (MQ=255)
        gCTATGCAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAAt                                                                                         >  1:267834/1‑100 (MQ=21)
         cTATGCAGAAATTTGCACAGTGCGCTATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATa                                                                                        <  1:1420936/100‑1 (MQ=255)
         cTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATa                                                                                        <  2:3040837/100‑1 (MQ=255)
         cTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATa                                                                                        <  1:3065415/100‑1 (MQ=255)
          tATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATaa                                                                                       <  1:4179061/100‑1 (MQ=255)
          tATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATaa                                                                                       >  2:103193/1‑100 (MQ=255)
          tATGCAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATaa                                                                                       >  2:454384/1‑100 (MQ=25)
           aTGCAGAAATTTTCACCGTGCGCAATGTTCTGCATAGCCGCTCATTCTCCTTATAAATCCACAACCAATTTATCCCTTCATATTCAAGTAGTTAAATAAc                                                                                      <  2:1742273/100‑1 (MQ=255)
           aTGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAAc                                                                                      >  1:2221341/1‑100 (MQ=255)
           aTGCAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAAc                                                                                      >  1:1965514/1‑100 (MQ=25)
            tGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACt                                                                                     >  1:749290/1‑100 (MQ=255)
             gCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTa                                                                                    <  2:4146170/100‑1 (MQ=255)
             gCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTa                                                                                    >  1:3111780/1‑100 (MQ=255)
             gCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTa                                                                                    >  2:4776828/1‑100 (MQ=255)
             gCAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTa                                                                                    >  1:5321826/1‑100 (MQ=25)
              cAGAAAATTGCGCACTGTGCAAATTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTaa                                                                                   >  2:5313173/1‑100 (MQ=37)
               aGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTaaa                                                                                  >  2:92987/1‑100 (MQ=255)
               aGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTaaa                                                                                  <  1:4743000/100‑1 (MQ=255)
                 aaaTTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATc                                                                                <  1:3281776/100‑1 (MQ=255)
                  aaTTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATcc                                                                               >  1:2404469/1‑100 (MQ=255)
                     ttGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCaat                                                                            <  1:878305/100‑1 (MQ=255)
                      tGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCaata                                                                           <  2:5105808/100‑1 (MQ=255)
                        gacaGTGCGCAGGTTTCTGCATAGCCGCTCGTTCTCCTTATAAATCCCCATCCTATTTATCCCTTCATACTCTAGTAGTTAAATAACTAAATCCaataat                                                                         <  1:4945237/99‑1 (MQ=255)
                        cacaGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCaataat                                                                         <  1:3616666/100‑1 (MQ=255)
                           aGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAAtctc                                                                      <  1:4062269/100‑1 (MQ=255)
                               cgcAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTc                                                                  <  2:2770737/100‑1 (MQ=255)
                               cgcAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTc                                                                  <  1:1472191/100‑1 (MQ=255)
                                gcAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCt                                                                 >  2:4752327/1‑100 (MQ=255)
                                   aTTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGc                                                              <  1:231218/100‑1 (MQ=255)
                                   aTTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGc                                                              <  1:3418373/100‑1 (MQ=255)
                                    ttttCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCCGGCa                                                             <  2:4672583/100‑1 (MQ=255)
                                     tttCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCAc                                                            <  2:1292536/100‑1 (MQ=255)
                                         tGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTccc                                                        <  1:2583751/100‑1 (MQ=255)
                                          gCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTcccc                                                       <  1:1901872/100‑1 (MQ=255)
                                          gCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTcccc                                                       >  2:2155753/1‑100 (MQ=255)
                                             tAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTg                                                    <  1:3567803/100‑1 (MQ=255)
                                             tAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTg                                                    >  2:1135384/1‑100 (MQ=255)
                                              aGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGc                                                   >  2:3669662/1‑100 (MQ=255)
                                               gCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCt                                                  <  2:208321/100‑1 (MQ=255)
                                                  gCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTAtt                                               <  2:1557370/100‑1 (MQ=255)
                                                  gCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTAtt                                               >  2:3499585/1‑100 (MQ=255)
                                                     cATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGcc                                            <  2:1537441/100‑1 (MQ=255)
                                                      aTTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCt                                           >  2:3618076/1‑100 (MQ=255)
                                                      aTTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCt                                           <  2:1644811/100‑1 (MQ=255)
                                                       ttCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTg                                          <  1:1384513/100‑1 (MQ=255)
                                                        tctcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGa                                         >  2:4790729/1‑100 (MQ=255)
                                                        tctcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGa                                         >  2:4698918/1‑100 (MQ=255)
                                                        tctcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGa                                         >  1:3963214/1‑100 (MQ=255)
                                                         ctcCTTATAAATCCCCATCCTATTTATCCCTTCATATTCAAATAGGTAAATAACTAAATCCAGTAATCTCATGCGGGCACTCCCCTTGCTATTTCTTGAc                                        >  2:1365579/1‑100 (MQ=255)
                                                         ctcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGAc                                        <  1:4670841/100‑1 (MQ=255)
                                                         ctcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGAc                                        <  1:3678962/100‑1 (MQ=255)
                                                         ctcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGAc                                        >  1:4065890/1‑100 (MQ=255)
                                                          tcCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACt                                       >  2:2567648/1‑100 (MQ=255)
                                                           ccTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTg                                      >  2:385554/1‑100 (MQ=255)
                                                           ccTTATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTg                                      <  2:2969072/100‑1 (MQ=255)
                                                             ttATAAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTa                                    >  1:4827170/1‑100 (MQ=255)
                                                              tataATTCCCCATCAAATTTACGCATTAATATTCAACTAGTTAATTAACTAAATCCAATAATCTCATTCTGGTACTCCCCCTGTTATTGCCTGACTGTAc                                   >  2:547129/1‑100 (MQ=255)
                                                              tataAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAc                                   <  2:834652/100‑1 (MQ=255)
                                                              tataAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAc                                   >  1:4861987/1‑100 (MQ=255)
                                                               ataAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAcc                                  >  2:1581583/1‑100 (MQ=255)
                                                                taAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAccc                                 >  2:1400418/1‑100 (MQ=255)
                                                                taAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTAccc                                 <  2:2352510/100‑1 (MQ=255)
                                                                taAATCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTCTAccc                                 <  2:3693413/100‑1 (MQ=255)
                                                                 agaTCCCCATCCAATTTATCCCTTGATATTCAAGTAGTTAAATAACTAAATCCGATAGTCTCATTCTGGCACTCCTCTTGCTATTGCGTTACTGTTcccc                                <  2:3790111/98‑2 (MQ=255)
                                                                 aaaTCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCca                                >  2:4875549/1‑100 (MQ=255)
                                                                 aaaTCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCca                                <  1:3016065/100‑1 (MQ=255)
                                                                 aaaTCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCca                                >  1:424308/1‑100 (MQ=255)
                                                                  aaTCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCcac                               <  1:1254145/100‑1 (MQ=255)
                                                                  aaTCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCcac                               >  1:2276378/1‑100 (MQ=255)
                                                                   aTCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCcaca                              <  2:2666846/100‑1 (MQ=255)
                                                                    tCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACaa                             >  2:1752680/1‑100 (MQ=255)
                                                                    tCCCCATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACaa                             >  1:1115655/1‑100 (MQ=255)
                                                                     ccccATCCAATTTATGCCTTCATATTCAAGTAGTTAAATAAGTATATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACACACAAc                            <  2:5242569/100‑1 (MQ=255)
                                                                      cccATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACg                           >  2:4507401/1‑100 (MQ=255)
                                                                      cccATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACg                           >  2:1422176/1‑100 (MQ=255)
                                                                        cATCCAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGgt                         <  1:969019/100‑1 (MQ=255)
                                                                           ccAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTa                      <  1:822684/100‑1 (MQ=255)
                                                                           ccAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTa                      <  2:2380524/100‑1 (MQ=255)
                                                                            cAATTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTAt                     >  1:3464457/1‑100 (MQ=255)
                                                                             aaTTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATg                    <  1:2496334/100‑1 (MQ=255)
                                                                              aTTTATCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGc                   <  2:3567184/100‑1 (MQ=255)
                                                                               cttATCCCTTCATATTCAAGTAGTTCAATCACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCa                  <  2:1232611/99‑1 (MQ=255)
                                                                                  aTCCCTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAaga               <  1:5105764/100‑1 (MQ=255)
                                                                                     ccTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAggg            >  1:4481578/1‑100 (MQ=255)
                                                                                     ccTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAggg            <  1:3166912/100‑1 (MQ=255)
                                                                                      cTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGa           >  2:685567/1‑100 (MQ=255)
                                                                                      cTTCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGa           >  1:1662518/1‑100 (MQ=255)
                                                                                       ttCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGAt          >  1:2797804/1‑100 (MQ=255)
                                                                                        tCATATTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATa         <  2:2368668/100‑1 (MQ=255)
                                                                                           tatTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATaaaa      >  1:5149561/1‑100 (MQ=255)
                                                                                            atTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATaaaaa     <  2:2239172/100‑1 (MQ=255)
                                                                                            atTCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATaaaaa     <  2:739740/100‑1 (MQ=255)
                                                                                              tCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAAt   <  2:3974462/100‑1 (MQ=255)
                                                                                              tCAAGTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACCGTACCCACAACGGTCTATGCAAGAGGGATAAAAAAt   >  2:5200920/1‑100 (MQ=255)
                                                                                                  |                                                                                                
CAAAACTTGCTATGCAGAAATTTGCACAGTGCGCAATTTTCTGCATAGCCGCTCATTCTCCTTATAAATCCCCATCCAATTTATCCCTTCATATTCAATTAGTTAAATAACTAAATCCAATAATCTCATTCTGGCACTCCCCTTGCTATTGCCTGACTGTACCCACAACGGTGTATGCAAGAGGGATAAAAAATG  >  NC_000913/2323255‑2323449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A