Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I3 R1
|
53 |
201.3 |
10250884 |
92.1% |
9441064 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,136,037 |
C→T |
intergenic (+22/‑71) |
katG → / → yijE |
catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,136,037 | 0 | C | T | 97.8%
| 599.1
/ 0.9
| 179 | intergenic (+22/‑71) | katG/yijE | catalase‑peroxidase HPI, heme b‑containing/EamA‑like transporter family protein |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base T (68/106); total (71/108) |
| Fisher's exact test for biased strand distribution p-value = 6.47e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.72e-01 |
Only 100 of 191 total aligned reads displayed.
GCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCC > NC_000913/4135938‑4136133
|
ccACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCtgttt < 1:1972574/100‑1 (MQ=255)
cACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCtgtttg < 1:3452095/100‑1 (MQ=255)
cACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCtgtttg > 2:2414629/1‑100 (MQ=255)
aCGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCtgtttgc > 1:921322/1‑100 (MQ=255)
aCGAGAAGTGTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCtgtttgc < 2:1474687/100‑1 (MQ=255)
gagaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTg < 2:1629576/100‑1 (MQ=255)
gagaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTg < 1:3075680/100‑1 (MQ=255)
gagaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTg < 1:2967479/100‑1 (MQ=255)
agaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTgg < 2:3015248/100‑1 (MQ=255)
agaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTgg < 1:693382/100‑1 (MQ=255)
agaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTgg < 1:2799999/100‑1 (MQ=255)
gaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGc < 1:1319543/100‑1 (MQ=255)
gaAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGc < 1:2793201/100‑1 (MQ=255)
gTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGt < 2:797167/100‑1 (MQ=255)
gTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGt > 2:3716117/1‑100 (MQ=255)
gTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGt > 1:2709686/1‑100 (MQ=255)
ttGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCg < 2:1417090/100‑1 (MQ=255)
ttGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCg > 2:2437878/1‑100 (MQ=255)
ttAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTg < 2:1675930/100‑1 (MQ=255)
tAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTGATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGa > 1:2016713/1‑100 (MQ=255)
aaGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAAc < 2:2201513/100‑1 (MQ=255)
aGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACg < 2:1282381/100‑1 (MQ=255)
aGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACg < 2:277590/100‑1 (MQ=255)
aGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACg < 2:1706728/100‑1 (MQ=255)
aGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACg < 2:662698/100‑1 (MQ=255)
cTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTc > 1:4726694/1‑100 (MQ=255)
cTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTc > 1:1967435/1‑100 (MQ=255)
cTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTc < 2:2011244/100‑1 (MQ=255)
tCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCtt < 1:619909/100‑1 (MQ=255)
cGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCttt < 2:2875022/100‑1 (MQ=255)
cGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCttt < 2:3785557/100‑1 (MQ=255)
cGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCttt < 1:2505878/100‑1 (MQ=255)
gTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTa > 2:3454696/1‑100 (MQ=255)
tGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTAc > 2:4108576/1‑100 (MQ=255)
ggcggcATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTAcc < 1:2451621/100‑1 (MQ=255)
ggcggcATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTAcc < 1:1090230/100‑1 (MQ=255)
ggcggcATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTAcc < 1:4533066/100‑1 (MQ=255)
gcATGGGTGAAAGTGATGAGCGTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCg > 1:4395531/1‑100 (MQ=255)
gcATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCg < 1:2266124/100‑1 (MQ=255)
gcAGGGGTGAAAGTGATGAGCCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCg < 2:3892841/100‑1 (MQ=255)
cATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGACCGTTCTTTACCAGCGt > 1:5151222/1‑100 (MQ=255)
aTGGGTGAAAGTGATTAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGta < 1:5002799/100‑1 (MQ=255)
tGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGtat > 1:1115166/1‑100 (MQ=255)
tGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGtat < 2:1551365/100‑1 (MQ=255)
tGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGtat < 2:4134284/100‑1 (MQ=255)
gTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGt < 1:4564593/100‑1 (MQ=255)
gAAAGTGCTGCACCTCGAACGTTTCGACCTGCTGTAATCAGACCCAGTTCCGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTgg < 1:2335475/100‑1 (MQ=255)
aacgTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTggg > 2:430483/4‑100 (MQ=255)
gTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGcga < 2:3254030/100‑1 (MQ=255)
gatgaACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGcgaac < 1:62475/100‑1 (MQ=255)
aaCCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGaaa > 1:3918744/1‑100 (MQ=255)
tccTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGaaaa < 2:3828221/99‑1 (MQ=255)
aCCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGaaaa > 1:352998/1‑100 (MQ=255)
aCCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGaaaa > 2:1583849/1‑100 (MQ=255)
aCCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGaaaa > 1:3722544/1‑100 (MQ=255)
ccTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAAc > 2:4346603/1‑100 (MQ=255)
ccTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAAc > 1:3897364/1‑100 (MQ=255)
ccTCGACCGTTTCGACCTGCTGTAATCGGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTAACAGCGTTTAGTGGTCGATCGAAAAc < 2:1047910/100‑1 (MQ=255)
cTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACt > 1:868202/1‑100 (MQ=255)
tCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTa < 2:739559/100‑1 (MQ=255)
tCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTa > 2:225850/1‑100 (MQ=255)
gACCGTTTCGACCTGCTGTAATCTTACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTacc < 2:3230403/100‑2 (MQ=255)
gACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTaca < 1:4271012/100‑1 (MQ=255)
aCCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTacac < 2:1929381/100‑1 (MQ=255)
aCCGTTTCGACCTGCTGTAATCTGACCCCCTGCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTacac < 1:2829149/100‑1 (MQ=255)
gTTTCGACCTGCTGTGATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACt < 2:1991617/100‑1 (MQ=255)
gTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACt < 1:2610980/100‑1 (MQ=255)
tttCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTg > 1:1056040/1‑100 (MQ=255)
tttCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTg < 2:1559893/100‑1 (MQ=255)
ttCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTgg < 2:3611679/100‑1 (MQ=255)
ttCGACCTGCGGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTgg > 2:4674671/1‑100 (MQ=255)
tCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGa < 1:282474/100‑1 (MQ=255)
tCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGa > 1:1660638/1‑100 (MQ=255)
cGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATCTTGGGCGAACGCAAACTACACACTGGAt > 2:1213643/1‑100 (MQ=255)
gACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtc < 2:1875860/100‑1 (MQ=255)
gACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtc < 2:4406523/100‑1 (MQ=255)
gACCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtc < 2:313628/100‑1 (MQ=255)
aCCTGCTGTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtct < 1:1606014/100‑1 (MQ=255)
ctgctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtctct < 1:3686131/100‑1 (MQ=255)
tgctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGAtctctc < 2:3142359/100‑1 (MQ=255)
gctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCa < 2:450222/100‑1 (MQ=255)
gctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCa > 2:426055/1‑100 (MQ=255)
gctgTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCa < 1:4954001/100‑1 (MQ=255)
ctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGACCGAAAACTACACACTGGATCTCTCAt > 1:3605154/1‑100 (MQ=255)
ctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCAt < 2:2602690/100‑1 (MQ=255)
ctgTAATCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATACTGGGCGAACGAAAACTACACACTGGATCCCTCAt > 2:92204/1‑100 (MQ=255)
aTCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTg > 1:1596101/1‑100 (MQ=255)
tCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACTAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGc < 2:4878836/100‑1 (MQ=255)
tCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGc < 1:1880536/100‑1 (MQ=255)
tCTGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGc > 1:1028062/1‑100 (MQ=255)
tGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCg < 1:3838629/100‑1 (MQ=255)
tGACCCCGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCg > 1:1136624/1‑100 (MQ=255)
ccccGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAg < 1:4641903/100‑1 (MQ=255)
ccccGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAg > 1:974233/1‑100 (MQ=255)
ccccGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAg > 2:4820760/1‑100 (MQ=255)
ccGTTCAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGa > 1:2054120/1‑100 (MQ=255)
cAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAagag > 1:3394067/1‑100 (MQ=255)
cAGCGGCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAagag < 2:2633371/100‑1 (MQ=255)
ggCTGTTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAAc < 2:3583744/100‑1 (MQ=255)
gctgttTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAAcc < 2:1942718/100‑1 (MQ=255)
|
GCCCACGAGAAGTTTGTTAAAGACTTCGTGGCGGCATGGGTGAAAGTGATGAACCTCGACCGTTTCGACCTGCTGTAATCTGACCCCGTTCAGCGGCTGCTTGCTGGCAGTCGCTGAACGTTCTTTACCAGCGTATAGTGGGCGAACGAAAACTACACACTGGATCTCTCATGTCTGCCGCAGGAAAGAGCAACCC > NC_000913/4135938‑4136133
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
