Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F412 I3 R1
|
53 |
201.3 |
10250884 |
92.1% |
9441064 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,397,649 |
Δ1 bp |
coding (238/1848 nt) |
mutL → |
methyl‑directed mismatch repair protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,397,646 | 0 | A | . | 99.5%
| 919.9
/ ‑2.5
| 192 | coding (235/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (97/94); total (98/94) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 |
Only 100 of 201 total aligned reads displayed.
ATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGACGCTC > NC_000913/4397547‑4397741
|
atCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAGCGGAAAAAAAAAAAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTa < 2:1137577/100‑1 (MQ=255)
atCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTa < 1:2891682/100‑1 (MQ=255)
cGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTaaa > 1:3405573/1‑100 (MQ=255)
aaCGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTaaatc < 1:2306927/100‑3 (MQ=255)
gcgGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGcc > 2:2704798/1‑100 (MQ=255)
cgGTGGGGCGAGACGTATCCGCATTCGTGATAACGGCTGCGGTAACAAGAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCct > 1:4529007/1‑100 (MQ=255)
gTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCctct > 2:814193/1‑100 (MQ=255)
tGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCctctc > 1:3823888/1‑100 (MQ=255)
ggggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAGGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCctctct > 2:2392680/1‑100 (MQ=255)
ggggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCctctct < 2:1239570/100‑1 (MQ=255)
ggggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCctctct < 1:1000834/100‑1 (MQ=255)
ggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTgg > 2:3145858/1‑100 (MQ=255)
ggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTgg > 1:2034129/1‑100 (MQ=255)
ggCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTgg > 1:2250856/1‑100 (MQ=255)
gCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGa < 2:3385810/100‑1 (MQ=255)
cGAAACTTATCCGCATTCGTGATAACGGCTGTTGTATCAAAAAAGATGAGCTGGCCCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTTGAc < 2:4790006/100‑1 (MQ=255)
cGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTgggc > 1:1128630/1‑98 (MQ=255)
cGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGAc < 1:4861217/100‑1 (MQ=255)
cGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGAc > 1:2994165/1‑100 (MQ=255)
gAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACg < 2:2965089/100‑1 (MQ=255)
cTTATCCGCATTCGTGATAACGTCTGCGGTATCAAAAAAGATGATCTGTCGCTGGCGCTGGCTCGTCATGCTCCCAGT‑AAATCGCCTCCCTGGCCGCtcg > 2:4612567/1‑99 (MQ=255)
cTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGAtct > 1:1620110/1‑100 (MQ=255)
ttATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTCGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGAtctc > 2:98027/1‑100 (MQ=255)
ccGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAg < 1:3741843/100‑1 (MQ=255)
cGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGc > 2:4572084/1‑100 (MQ=255)
cGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGc > 1:332799/1‑100 (MQ=255)
cGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGc < 2:4919127/100‑1 (MQ=255)
cATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGTGCTGGCTCGTCAAGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCa < 1:5017649/100‑1 (MQ=255)
cATTCGTGATAACGGCAGAGGAAAAAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCa < 2:1309472/100‑1 (MQ=255)
aTTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTNGCGCTGGCGCTGGCTCNTCATGCCACCAGT‑AAATCGCCTCTCTGGCCNATCNCGAAGCCAt > 1:3392335/1‑100 (MQ=255)
cGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTAt < 1:31074/100‑1 (MQ=255)
cGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTAt > 1:2184131/1‑100 (MQ=255)
gTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATc < 2:2234872/100‑1 (MQ=255)
gTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATc < 1:3655281/100‑1 (MQ=255)
tGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCa < 1:3989986/100‑1 (MQ=255)
tGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCa > 1:226705/1‑100 (MQ=255)
gATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAg > 1:1586162/1‑100 (MQ=255)
aTAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGc > 1:4137970/1‑100 (MQ=255)
aCGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTg < 1:3146612/100‑1 (MQ=255)
cGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTgg > 2:711589/1‑100 (MQ=255)
ggCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTggg > 2:4647985/1‑100 (MQ=255)
gCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGc > 1:1498648/1‑100 (MQ=255)
gTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTcgc > 2:2113/1‑100 (MQ=255)
gTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTAGACGATCTCGAAGCCATTATCAGCCTGGGCTTTcgc > 1:4851824/1‑100 (MQ=255)
tATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTcgcg > 1:4293208/1‑100 (MQ=255)
tATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTcgcg < 2:3858486/100‑1 (MQ=255)
aTCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGGCTGGGCTTTCGCgg > 2:4987106/1‑100 (MQ=255)
aTCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCgg < 1:1370092/100‑1 (MQ=255)
aTCAAAAAAGATGAGCTGGCGCTGGCGCTGGCGCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCgg < 1:2460368/100‑1 (MQ=255)
tCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGt > 1:591228/1‑100 (MQ=255)
tCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGt < 2:1176800/100‑1 (MQ=255)
aaaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGa > 2:1637444/1‑100 (MQ=255)
aaaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGa > 1:3699925/1‑100 (MQ=255)
aaaaaaGATGAGCTGGAGCTGACGCTGGCGCGTCATGCCACCAGT‑AAATCGCCCCCCTTGACGATCTCGAAGCCATGATCAGCCTTGGGTTTCGCGGTGa > 2:4488322/1‑100 (MQ=255)
aaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAg < 2:4102167/100‑1 (MQ=255)
aaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAg < 1:940979/100‑1 (MQ=255)
aaGATGAGCTGGCGCTGGCGCTGGCGCGTCATGCCACCAGT‑AAATCGCCTCGCTGGACGATCTCGAAGCCATTATCGGCCTGGGCTGTCGCGGTGAGgcg > 2:3960760/1‑100 (MQ=255)
aGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGgcgc < 1:3064098/100‑1 (MQ=255)
gATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCt < 2:3717738/100‑1 (MQ=255)
aTGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTg > 1:1534476/1‑100 (MQ=255)
tGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTgg > 1:4635090/1‑100 (MQ=255)
gAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGc < 1:1632265/100‑1 (MQ=255)
aGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCg < 1:767980/100‑1 (MQ=255)
aGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCg < 1:1716993/100‑1 (MQ=255)
ggcgctggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTa > 2:2537166/1‑100 (MQ=255)
ggcgctggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTa < 1:1285355/100‑1 (MQ=255)
gcgttggcgctggtTGGTCATGCAACGAGT‑AAAGCGGCTGTCTGGAGGATAGCGAAGCCATTACTAGCCTGAGCTTTCGAGGTGGGGCGCTGGCGAGTAt < 2:4817455/100‑1 (MQ=255)
gcgctggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTAt > 2:394298/1‑100 (MQ=255)
cgctggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATc < 1:3181435/100‑1 (MQ=255)
cgctggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATc < 2:3286864/100‑1 (MQ=255)
ctggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAg < 1:3223194/100‑1 (MQ=255)
tggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGt > 2:2315613/1‑100 (MQ=255)
tggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGt > 1:2811689/1‑100 (MQ=255)
ggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGACGCCATTATCAGCCTGGCCTTTCGCGGTGAGGCGCTGGCGAGTATCAGtt > 2:2667983/1‑100 (MQ=255)
ggcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGtt < 2:4455080/100‑1 (MQ=255)
gcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTc > 1:3597111/1‑100 (MQ=255)
gcgctggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTc < 1:5099986/100‑1 (MQ=255)
gatggcGCGTCATGCCCCAAGT‑ACATCTCCTCCCTGGACGGTCTCGTAGCCATTATCATCCTGGGCTTTCGCGGTGAGGCGCTAGCGAGTATCAGTTCgg < 2:3597160/98‑1 (MQ=255)
ctggcGCGTCACGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGt < 2:588687/100‑1 (MQ=255)
tggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCGGGTCgggt > 2:3060085/1‑98 (MQ=255)
tggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGtt < 1:869592/100‑1 (MQ=255)
ggcTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGttt < 2:2780205/100‑1 (MQ=255)
tcTCGTCCTGCCACCAGT‑AAGTGGGCTCTCTGGACGAGCTCGAAGCTATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTc < 2:1150273/99‑1 (MQ=255)
cTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTcc < 2:4758784/100‑1 (MQ=255)
cTCGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTcc > 1:421774/1‑100 (MQ=255)
cGTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCg > 1:2090083/1‑100 (MQ=255)
gTCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGc < 2:1827324/100‑1 (MQ=255)
tCATGCCACCAGT‑AAATCGCCTCTCTGGACGCGCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGcc < 2:1697934/100‑1 (MQ=255)
tCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGcc < 1:1659986/100‑1 (MQ=255)
tCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGcc > 1:4415840/1‑100 (MQ=255)
tCATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGcc < 1:1967451/100‑1 (MQ=255)
cATGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCt > 1:1828400/1‑100 (MQ=255)
aTGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTg < 1:2343365/100‑1 (MQ=255)
aTGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTg > 1:3239585/1‑100 (MQ=255)
tGCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATGATCTTCCTGGGCTATCGCGGCGAGTCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGa > 2:2055358/1‑100 (MQ=255)
gCCACCAGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGACGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGAc < 2:4946181/100‑1 (MQ=255)
ccaccgGT‑AAATCGCCTCTCTGGACGGTCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGACg < 2:2810713/100‑1 (MQ=255)
ccaccaGT‑AAATCGCCTCTCTGGACGATCGCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGACg < 2:1451070/100‑1 (MQ=255)
ccaGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGACGCTc < 1:4555717/100‑1 (MQ=255)
ccaGT‑AAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGACGCTc < 2:1804710/100‑1 (MQ=255)
|
ATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGGTTTCCCGCCTGACGCTC > NC_000913/4397547‑4397741
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
