Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F17 I0 R1
|
43 |
55.2 |
1410130 |
81.3% |
1146435 |
215.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,058,486 |
T→C |
15.5% |
S135P (TCG→CCG) |
torC → |
trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,058,486 | 0 | T | C | 15.5%
| 104.1
/ 3.0
| 54 | S135P (TCG→CCG) | torC | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base T (30/11); new base C (3/6); total (33/21) |
| Fisher's exact test for biased strand distribution p-value = 4.68e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCT > NC_000913/1058263‑1058700
|
atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCTGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAAAAAAAAACTCgg > 2:657249/1‑227 (MQ=255)
atatAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCCCGGAACTTGCCGACCGTGAATGGGCGCGAATGAAAGAAAAAAACTCgg > 1:449064/1‑227 (MQ=255)
gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGCTATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAATCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAAAAACTCGGAAAACTCCCg > 2:515503/1‑228 (MQ=255)
gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAATCGAGCGATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCCGGGGGGCACGGGCGGGAATGAAAGAAAAAAAATCGCCAACccgccg > 2:641149/1‑228 (MQ=255)
gTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGGGAATGGCGGCGAATGAAAGAAAACAACTCGCCAAccgcccg > 1:133233/1‑223 (MQ=255)
tCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGCGCGTGAATGGGCGCGAATGAAAAAAAAAAACCCGGAAACCTGCCgg > 2:282129/1‑227 (MQ=255)
cGGTGCATTGCCAGACCGCCGCCGGCGTGCGAGCTGAAGGCCATGACTGTCATCTCCCGCAGGATATCCCAGGCATGGTGAAGCGAAAACTGGAAGCGAGCAATGATATCTACCAGTCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCAAATGAAAGAAAACAACTCGGCAACCTGCCGCt < 1:190932/228‑1 (MQ=255)
tCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATa > 1:497711/1‑228 (MQ=255)
ccgaccGCCTCCGGCGTGCGAGCTGAATGCCATGCCTGGCATACCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACCCCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACCCGGCAACCTGCCGCTCCTGCCAt < 1:488565/220‑1 (MQ=255)
gAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCGTAACTa > 1:208547/1‑228 (MQ=255)
cGCCTCCGGCGGGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTAcg < 1:87488/227‑1 (MQ=255)
cGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGCCTCGAATGAAAGAAAACAACCCGGCAACCCGCCGGCCCTGCCCTAACTACGAAGCAAAGGAACa > 2:119057/1‑227 (MQ=255)
caggcgtGTCATAACCCGCCGGTTATTCCAGGCATGGGGAAGCAAAACGTGGAAGCGAGCAGTGATATCTGCCAGACCTTTATTGGCCACTCCAGTGATGCACCTGAAAAATTCGAAGCCAAGC‑GCCCGGACCTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACCCGGCAACCTGCCTCTCCTGCCATAACTACGATGCGATGGATCATGCGAAgcagca < 1:515503/221‑1 (MQ=255)
tCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGTTGCGATGGATCATGCGAAGCAGCATCCTGAagc > 1:561719/1‑228 (MQ=255)
cgccgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGGGAAGCAGCATCCTGAAGCAGCA‑CGTc > 1:558378/1‑228 (MQ=255)
cgccgGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAACCAGCATCCTGAAGCAGCC‑CGTc > 1:205604/1‑228 (MQ=255)
gCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGAAGGACCATTCGAAGCACCATCCTAAAGCAGCA‑CGTCAGATaaaagaggaag > 2:635779/1‑220 (MQ=255)
ggTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCGGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGGTCATGCGAAGCAGCATCCTGAAGCAGAC‑CGTCAGATGAAGGTGGCAGCGa > 1:41716/1‑227 (MQ=255)
gTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGTGCGCGAATGCAAGAAAACAACCCGGCAACCGGCCGCTCCTGCCATAACTACGATGCCATGGATCATGCAAAGCAGCACCCT‑TCCCAACACCGCCAGATGAAGGGGGCGGCGaaa > 2:59041/1‑228 (MQ=255)
gcgcAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGCTa > 1:413620/1‑227 (MQ=255)
cgcAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGAACATGCGAAGCAGCATCCTGAACAACCA‑CCCCAGAGAAAGGTGGCAGCGAAAGATaat > 2:337363/1‑228 (MQ=255)
aCTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGCCAGATGAAGGTGGCAGCGAAAGATaatcaatc > 1:24285/1‑228 (MQ=255)
aCTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGACCATGCGAAGCAGCAACCTGAAGCACCA‑CGCCAACGGAAGGGGGACGCGAAAAAAaataaaac > 2:207114/1‑226 (MQ=255)
atcAATGATATCTACCAGACCTTTATTGCACACTCCATTGACACACCTGAAAAATTCGAAGCCAACC‑GCGCGGAACTTGCCGAGCGTGAAGGGGCGCGAATGAAAGAAACCAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGAc < 1:119057/226‑1 (MQ=255)
aGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATCCGAAGCAGCATCCTGAAGCAGCA‑CGGCAGATAAAGGTGGCACCGAAGAAAAACCAATCCTgaacagcc > 1:274268/1‑221 (MQ=255)
aaacgcacaaGACCTTTAATGCTCACTCAATTGATACCACGGAAAAATGCAAAGCAAAAC‑GCGGGGAACTGGCCGAGCGTGAAGGGGCGCGAATGAAAGAAAACAACACGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATa < 1:341194/219‑1 (MQ=255)
cagccttttATTGCTCACTCCATTGATACACCTAAAAAATCCGAACCCAACC‑CGGCCGAACTTGCCGGGCGGGAAGGGGCGCGAATGAAAGAAAACAACCCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTa < 1:237149/220‑1 (MQ=255)
gACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCGGCGAAAGATATTCAAACTTGCACCGACTGTCATACAGGAAtgg > 1:257071/1‑225 (MQ=255)
gACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGCCAGCTGAAGGGGGCAGCGAAAGATAATCAATCATGCATGCACTTTCAAAAAGGAAATGc > 2:672853/1‑228 (MQ=255)
aCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAACGAAAACAACTCGGCAACCTGCCGCTCCTGCCCTAACTACGATGCGATGGATCATGCGACGCAGCATCCTGAAACAGCC‑CGTCCGATGAAGGTGTCCGCGCAAGATAATCAATCCCGCCTCGCCCGTCATAAAGGAATTGcc > 2:341194/1‑228 (MQ=255)
aCCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGc > 2:50030/1‑101 (MQ=255)
ccTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCa < 1:50030/101‑1 (MQ=255)
tttATTGCTCAATCCATGAATACCCCAAAAAAATTAGAAGCCAAAC‑CCGCGGACTTTGCCGGGCGTGAAGGGGAGCAAAGGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCccac < 1:635779/228‑1 (MQ=255)
aTTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAg > 1:180386/1‑228 (MQ=255)
cccccTCCATTGATACACCAGAAAAATTCAAAGCCAAAC‑GCGCGGAACTGCCGGGGGGTGATGGGGGGAAAAAGAAAGAAAACACCCCGGCACCCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTAc < 2:497711/224‑1 (MQ=255)
caacacATTGAAACACCGAAAAAATTCGAAGCCAACC‑GCGCGGAACTGGCCGAGCGGGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTAc < 1:657249/221‑1 (MQ=255)
gacacacgaaaaaaaTTGAAGCCCAACAGCGCGGAACTGGCCGAGCTTGAAGGGGCTAGAAGGAAAGAAAACAACGCGGCAACCGGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGt < 2:468716/219‑1 (MQ=255)
cacCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGc > 1:457288/1‑227 (MQ=255)
cacCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGCCATCAAGGAATTGCCCACCGGTAACCGGatttaagaacc > 1:436147/1‑218 (MQ=255)
ccTGAACAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGTTAATCACTCCTGCATCGCCTGTCGTAAAGGTATGGCCCACCAGTTCCCGGCTAGgaggagacga > 1:306624/1‑224 (MQ=255)
ccTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAACGGGATTGCCCACCCGTTACCGGCTATGAg > 1:468716/1‑221 (MQ=255)
ccTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGAATTGCCCACCAGTTACCGGCTATGAGTAGCGGc > 1:481848/1‑228 (MQ=255)
aaCTTGCCGGCGGTGAATGGGCGAGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTgcg < 1:534916/226‑1 (MQ=255)
ctGCCGGGCGGAAAGGGGCGGAAATGAAAGAAACAAGCTCGCACACCTGCCGCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCa < 1:672853/227‑1 (MQ=255)
gggAATGGGCACGAATGAAAAAAAACACATCGGCAACCTGCCGCCACTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAAt < 1:282129/225‑1 (MQ=255)
aaTGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGc > 1:176083/1‑157 (MQ=255)
cgcgAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtgg > 1:471753/1‑226 (MQ=255)
cgcgAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGGCATAAAGGTATTGCCAACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGTTGCGCGCCAGTGCTAATGACCgtgg > 1:658016/1‑226 (MQ=255)
gtaaaggaaagaaaACAACCCGGCACCCTGCCGCCGCTGCCATAACTCCGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCTAAAGATAATCAATCCTTCACCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg < 1:641149/221‑1 (MQ=255)
gggAAGGAAAAAAAACGACGGGTCACCCGCCCGCCCCTGCCATAACTACGAGGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAgtggtg < 2:273534/225‑1 (MQ=255)
aaTAAAAGAAAACAACGCGGCACTCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAAGCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGaca < 1:259712/227‑1 (MQ=255)
tGAAAAAAAACAACTCGGCAACCTGCAGCTCCTGACATAACTACGATGCGATGGATCAGGCGAAGCAGCAGCGTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 1:337363/227‑1 (MQ=255)
ataaaaaaaaCAACTCGGCACCCTGCCCCCCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACg < 1:207114/225‑1 (MQ=255)
ccaagaaaACACCCCGGCCACCGCCCCGCCCTGCCATAACTACGATGCGATGGAACATGCGAAGCAGCATCCTGAAGCAGCC‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCTGGTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCt < 2:608662/226‑1 (MQ=255)
|
ATATAAACAGTCGGTGCATTTCCAGAACGCCTCCGGCGTGCGAGCTGAATGCCATGACTGTCATATCCCGCCGGATATTCCAGGCATGGTGAAGCGCAAACTGGAAGCGAGCAATGATATCTACCAGACCTTTATTGCTCACTCCATTGATACACCTGAAAAATTCGAAGCCAAAC‑GCGCGGAACTTGCCGAGCGTGAATGGGCGCGAATGAAAGAAAACAACTCGGCAACCTGCCGCTCCTGCCATAACTACGATGCGATGGATCATGCGAAGCAGCATCCTGAAGCAGCA‑CGTCAGATGAAGGTGGCAGCGAAAGATAATCAATCCTGCATCGACTGTCATAAAGGTATTGCCCACCAGTTACCGGATATGAGTAGCGGCTTCCGTAAGCAGTTCGATGAGCTGCGCGCCAGTGCTAATGACAGTGGTGACACGCT > NC_000913/1058263‑1058700
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
